Rw1G027380

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000226
Physical Location & Seq
Forward (+)
54874367 .. 54879870
5504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027380.1

Sequence Viewer

Length: 2460 bp
ATGGATAAGCAGCAGCTTAAACACTTTGGTCACAGGCACCCATTGATGTTGAAGGAACAATATGGCGGTCTACCAGTTTCATGTGAGGCATGTGGCGATGCAGTGCTAGGTCCTCACTACAGTTGCAACCAATGTTTCGACAAATTCATTCTCCATAAGTCATGTGCGCAGCTACCAAGGGAGATGCTTCAGCACCCTTTGCACAGCAAGCACCCACTTAAACTTCGGACGAAGATTCAAAGAGGCAAATGGTTTGAATGTGATGCTTGTCGGGCACGATCCAATGCCTTCTCCTATAGATGTCGCCCATGTGAGTTCCACCTCGACGTCAAATGTGCTTTCAATTTCAGAAACACAGACAGTATAGTACATTTCAGTCACAAGCATGTATTGAGCTTGAGTACTGAAAATCAATCTGAAGAGGGACCACCACTATTGTGTACTGGGTGCTTAGAGCAAGTCCTTGGCCCTAGATACATTTGCGAAATTCCTTTCGAGAGGGAGAGAAGCTGCTCATCCATTGTTCTGCATCAATCTTGTGCGAAGCTATCTCGTGAGATCCAGCACCCGATGCACCGCCAACACGCACTTATTCTCAGTCAAAATGGAGCACGAGAATCCCACTGTGATGCTTGTGGCAAAGATTGCAGCCGCAGATTCAATTACAGTTGTTTCCGATGTGACTTCAACCTCGACCTCAAATGTGCTTCCGAGAAAGGCTTCAAACATTTCAGTCACGAGCATCCATTAATGTTCCAGAAGGGGGGAGGAGACGACAAGAAGAAAGGATATACTGGTCCACTAGTTGTTTGCGATGGGTGCCAGAACCAAATACTTGGCCCTAGTTACACTTGCATCAGTACATATCGCGGTCTTAAATGCTGTTTCAATCTCCACAAGTCATGTGCAGACTTACCCCTTGAGATTCGGCACCCAGTACACCGTCAACATCCGCTTTTTCTTCTCAATACAATTGAGAATATCAGAGTTAAAAAATGCTCATGTAATGCCTGCAATCAACCTTGCAGATACCGCTACAGCTGTTCCATATGCGATTTCAACCTTGACCTCAACTGTGCCTCCAATTGGCGAAAAATTATAGACACTGAATCTCATGAGCATCAGTTTACGGTGATCCCCCGGAAGGAAATGGCCCAGCTCCACCTTATATGTGACGTTTGTGGGGAGTACTACTGGAGTCGCGCTGCCTACTACTTCTGTAGCATCTGCCAGCTCTGGGTCCATAAGGAATGTGCTTCATTTCCACGCGACACCAAAATACCGGAGCACCAACACCGCCTCAAGCTAACCTGGTCCCTTGAAGACATTTACCCCAAGGACCACGTTTGTAAAATCTGCTCTACGAATATTGATAAGTGTCGTACTGTATATTATTGTCAGGAATGTTGCGGATATGTTGCCCACACTACATGCATGGCAGTTGATATTGAAGATGATGATTATGAGTCTGATGATGCTGCGGAGATCAAACACTTCAGTCATCAACATCGTTTAGTCTCTAAAGATCATCGTCAGGAGGTTAAGGTTGACAGAATAATTTCTTGTCAGGGTTGCATTCGACCCATCACTGAAGACTTCTACAGCTGTACTAAACAAGAAGAAGAATCTTGCCATTTCTATCTCCACAAAACTTGTGCTCGATTGCCAGAAAGGACGCTTCTCCCTTTGCTTCACCAACACCAGTTAATACTCCTCGCTCGGGCGCCTTCTATTGACGGCGTGTTTCAATGTTCTATATGTGGTATCTTTCACCAAGGCTTTGTATACAGTTGTGAGGAGCAATGTACTTTGCCAACCGGAAAAAACCCTTTCTACCTTGACCTTGAGTGCAGCATTTATTGGGAGAAAAGAGATCTTAAACATGAGTCTCATGCTCACCCCCTCCTCCTCGAAAAAAATTGGGAGGACGTCTGTTGCAGGGGTTGTGGTTCTAAAATAGTTTTCTTATTCAGTTGTAAGAGATGCAATTTTCATCTTTGCATAGCCTGTGTTAGATTACCTCTTACTGCTAGGCACCAGTACGACAAGCATCCTCTAAAGCTCACCTATGAAAGTATTGAAGACGAGCTAGGTGAATACTACTGTGAGATATGTGAAGGAAAAAGGAATCCAGCACATTGGTTCTACTGGTGCAAAGAGTGCGAGTTTGACTGTCATCCTCATTGTATTATAGGCAGGTATCCGCGAGTCGAGTTGGGGAGCACTTACGAGCACGAGGCTCATGTCCAACACCCGGTCACTCTTGTTAGCAAGTGGAAGAGCCCCATTCCGGGCGATAAAAGGGACAACATTCTTCCTTGTAAGAAGTGCGATGAACTTTGCCAAGGATTAGTATTTGAATGCAGAGAGTGCAATATAAATTTCCATCGAGACGGATGTTGTGTAACTACACATTCGGAAAGTTCTCGCAGGTCTCCTCAGATCGAAGAGCTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

819

Amino Acids

95.16

Weight (kDa)

7.43

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 10 - 56 3.4e-08 C1 domain
C1_2 PF03107 66 - 113 4.3e-10 C1 domain
C1_2 PF03107 191 - 236 5.2e-08 C1 domain
C1_2 PF03107 313 - 360 3.6e-08 C1 domain
C1_2 PF03107 429 - 479 1.1e-06 C1 domain
C1_2 PF03107 681 - 730 2.1e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 330, 1932
Acc16I TGCGCA 1 cut(s) 168
Acc36I ACCTGC 2 cut(s) 2187, 2421
AccB1I GGYRCC 5 cut(s) 36, 819, 930, 1723, 2034
AccI GTMKAC 2 cut(s) 70, 1785
AccII CGCG 4 cut(s) 870, 1203, 1269, 2206
AclWI GGATC 3 cut(s) 273, 553, 1129
AcsI RAATTY 3 cut(s) 143, 486, 2380
AcuI CTGAAG 4 cut(s) 173, 438, 1480, 1611
AcyI GRCGYC 3 cut(s) 327, 1724, 1929
AfiI CCNNNNNNNGG 8 cut(s) 763, 1086, 1144, 1237, 1720, 2254, 2290, 2291
AhlI ACTAGT 1 cut(s) 802
AjnI CCWGG 1 cut(s) 1310
AleI CACNNNNGTG 1 cut(s) 436
Alw21I GWGCWC 5 cut(s) 613, 1290, 1660, 2225, 2235
Alw26I GTCTC 5 cut(s) 765, 1522, 1893, 2385, 2439
AlwI GGATC 3 cut(s) 273, 553, 1129
Ama87I CYCGRG 1 cut(s) 1719
AoxI GGCC 3 cut(s) 466, 838, 1152
ApeKI GCWGC 8 cut(s) 10, 13, 169, 510, 648, 1205, 1478, 1851
ApoI RAATTY 3 cut(s) 143, 486, 2380
AseI ATTAAT 1 cut(s) 749
Asp700I GAANNNNTTC 2 cut(s) 719, 1558
AspLEI GCGC 3 cut(s) 169, 1205, 1726
AspS9I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
AsuC2I CCSGG 3 cut(s) 1141, 2255, 2292
AsuHPI GGTGA 6 cut(s) 1144, 1685, 1763, 1889, 2056, 2105
AvaI CYCGRG 1 cut(s) 1719
AvaII GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 5 cut(s) 36, 819, 930, 1723, 2034
BanII GRGCYC 1 cut(s) 2285
BauI CACGAG 4 cut(s) 552, 612, 737, 2234
BbsI GAAGAC 3 cut(s) 1329, 1599, 2088
Bbv12I GWGCWC 5 cut(s) 613, 1290, 1660, 2225, 2235
BbvI GCAGC 8 cut(s) 22, 25, 181, 497, 660, 1192, 1465, 1863
BccI CCATC 3 cut(s) 809, 1592, 2394
BceAI ACGGC 1 cut(s) 1753
BciT130I CCWGG 1 cut(s) 1312
BciVI GTATCC 1 cut(s) 2211
BcnI CCSGG 3 cut(s) 1141, 2255, 2292
BcoDI GTCTC 5 cut(s) 765, 1522, 1893, 2385, 2439
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 6 cut(s) 107, 471, 803, 843, 2031, 2090
BfmI CTRYAG 5 cut(s) 118, 295, 1036, 1219, 1600
BfoI RGCGCY 1 cut(s) 1727
BfuAI ACCTGC 2 cut(s) 2187, 2421
BfuI GTATCC 1 cut(s) 2211
BglII AGATCT 1 cut(s) 1873
BisI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1479, 1852
BlsI GCNGC 9 cut(s) 12, 15, 171, 512, 650, 653, 1207, 1480, 1853
BmcAI AGTACT 2 cut(s) 403, 1190
Bme1390I CCNGG 4 cut(s) 1141, 1312, 2255, 2292
Bme18I GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
BmeT110I CYCGRG 1 cut(s) 1719
BmgT120I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
BmiI GGNNCC 8 cut(s) 38, 426, 821, 932, 1241, 1316, 1725, 2036
BmrFI CCNGG 4 cut(s) 1141, 1312, 2255, 2292
BmrI ACTGGG 2 cut(s) 453, 929
BmuI ACTGGG 2 cut(s) 453, 929
BpiI GAAGAC 3 cut(s) 1329, 1599, 2088
BpmI CTGGAG 1 cut(s) 1216
BpuEI CTTGAG 4 cut(s) 418, 941, 1286, 1865
BpuMI CCSGG 3 cut(s) 1141, 2255, 2292
BsaHI GRCGYC 3 cut(s) 327, 1724, 1929
BsaI GGTCTC 1 cut(s) 2439
BsaJI CCNNGG 6 cut(s) 176, 463, 1139, 1335, 1774, 2344
BsaWI WCCGGW 2 cut(s) 1282, 1817
BsaXI ACNNNNNCTCC 2 cut(s) 1064, 1094
Bsc4I CCNNNNNNNGG 8 cut(s) 763, 1086, 1144, 1237, 1720, 2254, 2290, 2291
Bse1I ACTGG 8 cut(s) 74, 448, 799, 935, 1199, 1702, 2038, 2153
Bse3DI GCAATG 1 cut(s) 1808
BseBI CCWGG 1 cut(s) 1312
BseDI CCNNGG 6 cut(s) 176, 463, 1139, 1335, 1774, 2344
BseGI GGATG 6 cut(s) 515, 742, 949, 2050, 2176, 2402
BseLI CCNNNNNNNGG 8 cut(s) 763, 1086, 1144, 1237, 1720, 2254, 2290, 2291
BseMI GCAATG 1 cut(s) 1808
BseMII CTCAG 2 cut(s) 610, 2453
BseNI ACTGG 8 cut(s) 74, 448, 799, 935, 1199, 1702, 2038, 2153
BseRI GAGGAG 6 cut(s) 783, 1703, 1811, 1895, 1898, 2427
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 8 cut(s) 22, 25, 181, 497, 660, 1192, 1465, 1863
BseYI CCCAGC 1 cut(s) 1155
BsgI GTGCAG 2 cut(s) 927, 1870
Bsh1236I CGCG 4 cut(s) 870, 1203, 1269, 2206
BshFI GGCC 3 cut(s) 468, 840, 1154
BshNI GGYRCC 5 cut(s) 36, 819, 930, 1723, 2034
BsiHKAI GWGCWC 5 cut(s) 613, 1290, 1660, 2225, 2235
BsiHKCI CYCGRG 1 cut(s) 1719
BsiSI CCGG 5 cut(s) 1141, 1283, 1818, 2255, 2291
BslFI GGGAC 3 cut(s) 438, 1300, 2318
BslI CCNNNNNNNGG 8 cut(s) 763, 1086, 1144, 1237, 1720, 2254, 2290, 2291
BsmAI GTCTC 5 cut(s) 765, 1522, 1893, 2385, 2439
BsmBI CGTCTC 2 cut(s) 765, 2385
BsmFI GGGAC 3 cut(s) 438, 1300, 2318
BsmI GAATGC 2 cut(s) 1575, 2366
BsnI GGCC 3 cut(s) 468, 840, 1154
Bso31I GGTCTC 1 cut(s) 2439
BsoBI CYCGRG 1 cut(s) 1719
Bsp1286I GDGCHC 7 cut(s) 277, 613, 1290, 1660, 2225, 2235, 2285
Bsp143I GATC 7 cut(s) 278, 558, 1134, 1485, 1525, 1873, 2442
BspANI GGCC 3 cut(s) 468, 840, 1154
BspCNI CTCAG 2 cut(s) 609, 2452
BspFNI CGCG 4 cut(s) 870, 1203, 1269, 2206
BspHI TCATGA 1 cut(s) 1114
BspLI GGNNCC 8 cut(s) 38, 426, 821, 932, 1241, 1316, 1725, 2036
BspMI ACCTGC 2 cut(s) 2187, 2421
BspPI GGATC 3 cut(s) 273, 553, 1129
BspQI GCTCTTC 2 cut(s) 2273, 2442
BspT107I GGYRCC 5 cut(s) 36, 819, 930, 1723, 2034
BspTNI GGTCTC 1 cut(s) 2439
BsrDI GCAATG 1 cut(s) 1808
BsrI ACTGG 8 cut(s) 74, 448, 799, 935, 1199, 1702, 2038, 2153
BssECI CCNNGG 6 cut(s) 176, 463, 1139, 1335, 1774, 2344
BssMI GATC 7 cut(s) 278, 558, 1134, 1485, 1525, 1873, 2442
BssNAI GTATAC 1 cut(s) 1786
BssNI GRCGYC 3 cut(s) 327, 1724, 1929
BssSI CACGAG 4 cut(s) 552, 612, 737, 2234
BssT1I CCWWGG 5 cut(s) 176, 463, 1335, 1774, 2344
Bst1107I GTATAC 1 cut(s) 1786
Bst2BI CACGAG 4 cut(s) 552, 612, 737, 2234
Bst2UI CCWGG 1 cut(s) 1312
Bst6I CTCTTC 3 cut(s) 414, 2273, 2442
BstACI GRCGYC 3 cut(s) 327, 1724, 1929
BstAPI GCANNNNNTGC 5 cut(s) 199, 571, 645, 2160, 2370
BstC8I GCNNGC 3 cut(s) 209, 1012, 1232
BstDEI CTNAG 4 cut(s) 451, 596, 2439, 2453
BstF5I GGATG 6 cut(s) 515, 742, 949, 2050, 2176, 2402
BstFNI CGCG 4 cut(s) 870, 1203, 1269, 2206
BstH2I RGCGCY 1 cut(s) 1727
BstHHI GCGC 3 cut(s) 169, 1205, 1726
BstKTI GATC 7 cut(s) 281, 561, 1137, 1488, 1528, 1876, 2445
BstMAI GTCTC 5 cut(s) 765, 1522, 1893, 2385, 2439
BstMBI GATC 7 cut(s) 278, 558, 1134, 1485, 1525, 1873, 2442
BstMWI GCNNNNNNNGC 9 cut(s) 199, 208, 272, 571, 645, 819, 1032, 2160, 2370
BstNI CCWGG 1 cut(s) 1312
BstNSI RCATGY 3 cut(s) 93, 389, 1434
BstSCI CCNGG 4 cut(s) 1139, 1310, 2253, 2290
BstSFI CTRYAG 5 cut(s) 118, 295, 1036, 1219, 1600
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 4 cut(s) 870, 1203, 1269, 2206
BstV1I GCAGC 8 cut(s) 22, 25, 181, 497, 660, 1192, 1465, 1863
BstV2I GAAGAC 3 cut(s) 1329, 1599, 2088
BstX2I RGATCY 2 cut(s) 558, 1873
BstXI CCANNNNNNTGG 2 cut(s) 836, 2139
BstYI RGATCY 2 cut(s) 558, 1873
BstZ17I GTATAC 1 cut(s) 1786
BsuI GTATCC 1 cut(s) 2211
BsuRI GGCC 3 cut(s) 468, 840, 1154
BtgZI GCGATG 3 cut(s) 111, 828, 2346
BtsCI GGATG 6 cut(s) 515, 742, 949, 2050, 2176, 2402
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 4 cut(s) 108, 622, 1104, 1587
BveI ACCTGC 2 cut(s) 2187, 2421
Cac8I GCNNGC 3 cut(s) 209, 1012, 1232
CciI TCATGA 1 cut(s) 1114
CfoI GCGC 3 cut(s) 169, 1205, 1726
Cfr13I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
CseI GACGC 1 cut(s) 1684
CsiI ACCWGGT 1 cut(s) 1310
CspCI CAANNNNNGTGG 4 cut(s) 417, 452, 1634, 1669
DdeI CTNAG 4 cut(s) 451, 596, 2439, 2453
DinI GGCGCC 1 cut(s) 1725
DpnI GATC 7 cut(s) 280, 560, 1136, 1487, 1527, 1875, 2444
DpnII GATC 7 cut(s) 278, 558, 1134, 1485, 1525, 1873, 2442
Eam1104I CTCTTC 3 cut(s) 414, 2273, 2442
EarI CTCTTC 3 cut(s) 414, 2273, 2442
Eco130I CCWWGG 5 cut(s) 176, 463, 1335, 1774, 2344
Eco24I GRGCYC 1 cut(s) 2285
Eco31I GGTCTC 1 cut(s) 2439
Eco47I GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
Eco57I CTGAAG 4 cut(s) 173, 438, 1480, 1611
Eco88I CYCGRG 1 cut(s) 1719
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 1310
EcoT14I CCWWGG 5 cut(s) 176, 463, 1335, 1774, 2344
EcoT22I ATGCAT 1 cut(s) 1436
EcoT38I GRGCYC 1 cut(s) 2285
EgeI GGCGCC 1 cut(s) 1725
EheI GGCGCC 1 cut(s) 1725
ErhI CCWWGG 5 cut(s) 176, 463, 1335, 1774, 2344
Esp3I CGTCTC 2 cut(s) 765, 2385
FaqI GGGAC 3 cut(s) 438, 1300, 2318
FauNDI CATATG 1 cut(s) 1049
FblI GTMKAC 2 cut(s) 70, 1785
Fnu4HI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1479, 1852
FokI GGATG 6 cut(s) 502, 729, 936, 2037, 2163, 2409
FriOI GRGCYC 1 cut(s) 2285
Fsp4HI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1479, 1852
FspBI CTAG 6 cut(s) 107, 471, 803, 843, 2031, 2090
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 3 cut(s) 168, 1204, 1725
GluI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1479, 1852
GsaI CCCAGC 1 cut(s) 1159
GsuI CTGGAG 1 cut(s) 1216
HaeII RGCGCY 1 cut(s) 1727
HaeIII GGCC 3 cut(s) 468, 840, 1154
HapII CCGG 5 cut(s) 1141, 1283, 1818, 2255, 2291
HgaI GACGC 1 cut(s) 1684
HhaI GCGC 3 cut(s) 169, 1205, 1726
Hin1I GRCGYC 3 cut(s) 327, 1724, 1929
Hin6I GCGC 3 cut(s) 167, 1203, 1724
HinP1I GCGC 3 cut(s) 167, 1203, 1724
HincII GTYRAC 2 cut(s) 947, 1549
HindII GTYRAC 2 cut(s) 947, 1549
HpaII CCGG 5 cut(s) 1141, 1283, 1818, 2255, 2291
HphI GGTGA 6 cut(s) 1144, 1685, 1763, 1889, 2056, 2105
Hpy166II GTNNAC 8 cut(s) 71, 441, 800, 940, 947, 1128, 1549, 1786
Hpy188I TCNGA 9 cut(s) 228, 350, 418, 677, 712, 986, 1471, 2419, 2442
Hpy188III TCNNGA 8 cut(s) 496, 554, 737, 757, 1115, 1400, 1535, 2390
Hpy8I GTNNAC 8 cut(s) 71, 441, 800, 940, 947, 1128, 1549, 1786
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 6 cut(s) 46, 298, 754, 1138, 1737, 2111
HpyCH4IV ACGT 4 cut(s) 327, 1176, 1344, 1929
HpyF10VI GCNNNNNNNGC 9 cut(s) 199, 208, 272, 571, 645, 819, 1032, 2160, 2370
HpyF3I CTNAG 4 cut(s) 451, 596, 2439, 2453
HpySE526I ACGT 4 cut(s) 327, 1176, 1344, 1929
Hsp92I GRCGYC 3 cut(s) 327, 1724, 1929
HspAI GCGC 3 cut(s) 167, 1203, 1724
KasI GGCGCC 1 cut(s) 1723
Kzo9I GATC 7 cut(s) 278, 558, 1134, 1485, 1525, 1873, 2442
LguI GCTCTTC 2 cut(s) 2273, 2442
LmnI GCTCC 5 cut(s) 608, 1164, 1285, 1798, 2220
Lsp1109I GCAGC 8 cut(s) 22, 25, 181, 497, 660, 1192, 1465, 1863
MabI ACCWGGT 1 cut(s) 1310
MaeI CTAG 6 cut(s) 107, 471, 803, 843, 2031, 2090
MaeII ACGT 4 cut(s) 327, 1176, 1344, 1929
MaeIII GTNAC 8 cut(s) 29, 377, 680, 734, 845, 1172, 2257, 2404
MalI GATC 7 cut(s) 280, 560, 1136, 1487, 1527, 1875, 2444
MboI GATC 7 cut(s) 278, 558, 1134, 1485, 1525, 1873, 2442
MfeI CAATTG 2 cut(s) 972, 1084
MflI RGATCY 2 cut(s) 558, 1873
MhlI GDGCHC 7 cut(s) 277, 613, 1290, 1660, 2225, 2235, 2285
Mly113I GGCGCC 1 cut(s) 1724
MlyI GAGTC 4 cut(s) 1207, 1475, 1895, 2217
MmeI TCCRAC 1 cut(s) 2272
Mph1103I ATGCAT 1 cut(s) 1436
MroXI GAANNNNTTC 2 cut(s) 719, 1558
MseI TTAA 9 cut(s) 18, 219, 749, 876, 990, 1542, 1706, 1878, 2458
MslI CAYNNNNRTG 3 cut(s) 384, 436, 627
MspA1I CMGCKG 2 cut(s) 1041, 1605
MspI CCGG 5 cut(s) 1141, 1283, 1818, 2255, 2291
MspR9I CCNGG 4 cut(s) 1141, 1312, 2255, 2292
MunI CAATTG 2 cut(s) 972, 1084
Mva1269I GAATGC 2 cut(s) 1575, 2366
MvaI CCWGG 1 cut(s) 1312
MvnI CGCG 4 cut(s) 870, 1203, 1269, 2206
MwoI GCNNNNNNNGC 9 cut(s) 199, 208, 272, 571, 645, 819, 1032, 2160, 2370
NarI GGCGCC 1 cut(s) 1724
NciI CCSGG 3 cut(s) 1141, 2255, 2292
NdeI CATATG 1 cut(s) 1049
NdeII GATC 7 cut(s) 278, 558, 1134, 1485, 1525, 1873, 2442
NlaIV GGNNCC 8 cut(s) 38, 426, 821, 932, 1241, 1316, 1725, 2036
NmuCI GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2257
NsbI TGCGCA 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 1436
NspI RCATGY 3 cut(s) 93, 389, 1434
OliI CACNNNNGTG 1 cut(s) 436
PagI TCATGA 1 cut(s) 1114
PciSI GCTCTTC 2 cut(s) 2273, 2442
PctI GAATGC 2 cut(s) 1575, 2366
PdmI GAANNNNTTC 2 cut(s) 719, 1558
PfeI GAWTC 7 cut(s) 235, 617, 657, 925, 1109, 1625, 2128
PkrI GCNGC 9 cut(s) 12, 15, 171, 512, 650, 653, 1207, 1480, 1853
PleI GAGTC 4 cut(s) 1206, 1474, 1894, 2216
PluTI GGCGCC 1 cut(s) 1727
PpsI GAGTC 4 cut(s) 1206, 1474, 1894, 2216
PpuMI RGGWCCY 1 cut(s) 110
PshBI ATTAAT 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 1310
PspFI CCCAGC 1 cut(s) 1155
PspGI CCWGG 1 cut(s) 1310
PspN4I GGNNCC 8 cut(s) 38, 426, 821, 932, 1241, 1316, 1725, 2036
PspPI GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
PspPPI RGGWCCY 1 cut(s) 110
PsuI RGATCY 2 cut(s) 558, 1873
PvuII CAGCTG 2 cut(s) 1041, 1605
RseI CAYNNNNRTG 3 cut(s) 384, 436, 627
SapI GCTCTTC 2 cut(s) 2273, 2442
SaqAI TTAA 9 cut(s) 18, 219, 749, 876, 990, 1542, 1706, 1878, 2458
SatI GCNGC 9 cut(s) 11, 14, 170, 511, 649, 652, 1206, 1479, 1852
Sau3AI GATC 7 cut(s) 278, 558, 1134, 1485, 1525, 1873, 2442
Sau96I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1240, 1314, 1339
ScaI AGTACT 2 cut(s) 403, 1190
SchI GAGTC 4 cut(s) 1207, 1475, 1895, 2217
ScrFI CCNGG 4 cut(s) 1141, 1312, 2255, 2292
SduI GDGCHC 7 cut(s) 277, 613, 1290, 1660, 2225, 2235, 2285
SexAI ACCWGGT 1 cut(s) 1310
SfcI CTRYAG 5 cut(s) 118, 295, 1036, 1219, 1600
SfoI GGCGCC 1 cut(s) 1725
SinI GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
SmiMI CAYNNNNRTG 3 cut(s) 384, 436, 627
SmlI CTYRAG 4 cut(s) 397, 920, 1301, 1844
SmoI CTYRAG 4 cut(s) 397, 920, 1301, 1844
SpeI ACTAGT 1 cut(s) 802
SspDI GGCGCC 1 cut(s) 1723
SspI AATATT 1 cut(s) 1369
SspMI CTAG 6 cut(s) 107, 471, 803, 843, 2031, 2090
StyD4I CCNGG 4 cut(s) 1139, 1310, 2253, 2290
StyI CCWWGG 5 cut(s) 176, 463, 1335, 1774, 2344
TaiI ACGT 4 cut(s) 330, 1179, 1347, 1932
TatI WGTACW 8 cut(s) 367, 401, 440, 860, 937, 1188, 1607, 1805
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 7 cut(s) 235, 617, 657, 925, 1109, 1625, 2128
Tru1I TTAA 9 cut(s) 18, 219, 749, 876, 990, 1542, 1706, 1878, 2458
Tru9I TTAA 9 cut(s) 18, 219, 749, 876, 990, 1542, 1706, 1878, 2458
TscAI CASTG 4 cut(s) 108, 629, 1111, 1594
TseFI GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2257
TseI GCWGC 8 cut(s) 10, 13, 169, 510, 648, 1205, 1478, 1851
Tsp45I GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2257
TspDTI ATGAA 6 cut(s) 69, 136, 1248, 1982, 2085, 2349
TspGWI ACGGA 1 cut(s) 2409
TspRI CASTG 4 cut(s) 108, 629, 1111, 1594
VpaK11BI GGWCC 6 cut(s) 110, 425, 797, 1240, 1314, 1339
VspI ATTAAT 1 cut(s) 749
XapI RAATTY 3 cut(s) 143, 486, 2380
XceI RCATGY 3 cut(s) 93, 389, 1434
XmiI GTMKAC 2 cut(s) 70, 1785
XmnI GAANNNNTTC 2 cut(s) 719, 1558
XspI CTAG 6 cut(s) 107, 471, 803, 843, 2031, 2090
ZraI GACGTC 2 cut(s) 328, 1930
ZrmI AGTACT 2 cut(s) 403, 1190
Zsp2I ATGCAT 1 cut(s) 1436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.