AT5G54040

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000226
Physical Location & Seq
Reverse (-)
21928847 .. 21930637
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54040.1

Sequence Viewer

Length: 1791 bp
ATGACTCCTGATGATTTCCAACTAGCCACCATGCCTAAACTCACGGTTCCTTTTCATGATCATCCTATGTCAAGTTCTTATTGTATTTTTTTGGAATCTTGCTCTTTGTGCTCTTTCTCTAAGAACTCTTCATGGCTAAGAAGAAGTGTTACTTGTATCAGTTACGAGTGTACGGATTGTGGCTTGACGTTGCACAAAGAATGCGTTGACCACCTCTTCCTCAACCGGCCATTTCTATGCAATCACGTTCTCAAGATCTACCGTAATACCTTCGCGTGGCCTGACCCTGACCGTAAAGACGACCTTTCTTGTCATTTTTGTCGACGTAAGCTTACGTCTTTCTTTGCTCGGCTACGTAATCTTCCGTCTTTCTTTGCTCGTTGCACGATATGCAACATAAACGTGGATAAAAAATGTTTAATGGCATTGGGACCACCACTCGCAATTTTCGAACCAAAACACCACGAGCATAGTCTCACCCTCTTGTTAAGGTTAGTCACCTTTACTTGTAATGCTTGTGGTGTGGTAGATGACCGCAATCCTTACGTATGTCTTGAATGCAATTTGATGGTCCACAAAGAGTGTGTTCAGAATCTACCGCGAGTCATAAGCATAAATCGTCATGACCATCGCATATCTCATACTTTTCACCTTGGTCAAGGAGAAGGAGATTGGGAGTGTGGAGTTTGTCGGAAGACGATCAATTGGGTCTATGGAGGTTATAAATGCTCTCGTTGTCCTAGTTATGCCGTTCATTCAAGATGTGCAACAAGATACGAAGTGTGGGATGGTTTAGAGCTCGAAGATGTGCCCGAAGAAGAAGAAGAAATCGAAGATCCATTCAAGGTAATTAATGAAAAGGGAGATATCATTCATTTTAGTCATGAAGAGCATGTTCTCAGATTGGACGAGATTTATGTAACGGATGATGCTAACATGCGTTGTCGGTGTTGCGTTCTTGCTATCAACGGTGACCCATGCTACAGATGCGTTGAATGTGATTTCATCCTTCACAAAGCGTGTGCGAATCTTCCTCGAAAAATGCGACATTTATTGCATAAGCATAAACTCACTCTTTCATCGACAGGTAACCGTTTTTTGAGATGTAAAGCTTGTGACATAAAAACTAATGGTTTCATTTACGAGTGTCTTCATGAAGGTTGCAAAAGTATTAGTTTTACGTACGATGTTCGGTGTAGTTCTGTATCGGAACCGTTTCACCATGATCTGCATCAACATCCCTTATATTTTACGTTGGAGAAAACCAATAAATGTCACGCTTGTAAAAGAAAAATAGATTGGAATCCCTTGAATTGTACGGTTTGTGATGATTACTCTTTATGCACGAGGTGCGCTGCTTTACCAAGAAAGGTAAAACACAGATGTGATGATCATTATCTGTCACTATGTCAAGGTGTGGGAAGTGCAAGTGGTGACTTGTGGTGTGATATTTGTGAGACAAAGACAGACCCGAGTGTATTTTACTATACTTGTGATGATTGTGGGCTAAGTCTCCATATTGATTGTGTACTTGGGGATTGCTATTATACCAAAGTCGGATGCCCAGGTCCTAGGATGGAAGTACATCCTAACAATGGTGCTACTCGACCTATCTGCACCAAGTGTGAATTACGTTGCAAGTTCCCCTTCTTCATAAAGGGTACAGAAGAAGATCTTGGTATTTGGTATTGTTCAAAAGATCTCTGCCCAAAGGAGTTTAATTTTGCAGTTTCACCTTATAGATTCGCTCTCGACATCGGACTTCGGGACTGGGACTTGAGAGTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

596

Amino Acids

68.84

Weight (kDa)

6.77

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 154 - 196 1.7e-10 C1 domain
C1_2 PF03107 206 - 256 2.6e-10 C1 domain
C1_2 PF03107 293 - 342 5.8e-11 C1 domain
C1_2 PF03107 410 - 452 9.1e-06 C1 domain
C1_2 PF03107 461 - 510 1e-08 C1 domain
C1-like_CT PF22926 526 - 566 1.1e-11 C1 domain-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 723
AasI GACNNNNNNGTC 1 cut(s) 1781
AccI GTMKAC 1 cut(s) 322
AccII CGCG 2 cut(s) 275, 601
AciI CCGC 2 cut(s) 535, 599
AclWI GGATC 1 cut(s) 830
AcoI YGGCCR 1 cut(s) 227
AdeI CACNNNGTG 2 cut(s) 1350, 1623
AfaI GTAC 6 cut(s) 172, 1184, 1318, 1530, 1584, 1663
AfiI CCNNNNNNNGG 2 cut(s) 276, 1595
AgsI TTSAA 6 cut(s) 557, 759, 844, 995, 1312, 1695
AjnI CCWGG 1 cut(s) 1564
AjuI GAANNNNNNNTTGG 4 cut(s) 1282, 1314, 1659, 1691
AleI CACNNNNGTG 1 cut(s) 1383
AluBI AGCT 3 cut(s) 331, 799, 1112
AluI AGCT 3 cut(s) 331, 799, 1112
Alw21I GWGCWC 2 cut(s) 113, 801
Alw26I GTCTC 3 cut(s) 479, 1451, 1517
AlwI GGATC 1 cut(s) 830
Ama87I CYCGRG 1 cut(s) 1471
AoxI GGCC 2 cut(s) 227, 278
ApeKI GCWGC 1 cut(s) 1355
AseI ATTAAT 1 cut(s) 852
Asp700I GAANNNNTTC 1 cut(s) 1215
AspA2I CCTAGG 1 cut(s) 1571
AspLEI GCGC 1 cut(s) 1355
AspS9I GGNCC 3 cut(s) 431, 571, 1568
AsuHPI GGTGA 7 cut(s) 469, 490, 641, 983, 1211, 1445, 1725
AsuII TTCGAA 1 cut(s) 450
AvaI CYCGRG 1 cut(s) 1471
AvaII GGWCC 3 cut(s) 431, 571, 1568
AvrII CCTAGG 1 cut(s) 1571
BaeGI GKGCMC 1 cut(s) 813
BanII GRGCYC 1 cut(s) 801
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BauI CACGAG 2 cut(s) 464, 1345
BbsI GAAGAC 2 cut(s) 701, 1142
Bbv12I GWGCWC 2 cut(s) 113, 801
BbvI GCAGC 1 cut(s) 1342
BccI CCATC 4 cut(s) 562, 636, 782, 1570
BceAI ACGGC 1 cut(s) 734
BcgI CGANNNNNNTGC 2 cut(s) 1596, 1630
BciT130I CCWGG 1 cut(s) 1566
BclI TGATCA 2 cut(s) 58, 1390
BcoDI GTCTC 3 cut(s) 479, 1451, 1517
BfaI CTAG 3 cut(s) 23, 741, 1572
BfmI CTRYAG 1 cut(s) 982
BglII AGATCT 3 cut(s) 255, 1672, 1699
BisI GCNGC 1 cut(s) 1356
BlnI CCTAGG 1 cut(s) 1571
BlsI GCNGC 1 cut(s) 1357
Bme1390I CCNGG 1 cut(s) 1566
Bme18I GGWCC 3 cut(s) 431, 571, 1568
BmeT110I CYCGRG 1 cut(s) 1471
BmgT120I GGNCC 3 cut(s) 431, 571, 1568
BmiI GGNNCC 3 cut(s) 48, 432, 1212
BmrFI CCNGG 1 cut(s) 1566
BmrI ACTGGG 1 cut(s) 1780
BmsI GCATC 4 cut(s) 919, 977, 1240, 1550
BmuI ACTGGG 1 cut(s) 1780
BpiI GAAGAC 2 cut(s) 701, 1142
Bpu14I TTCGAA 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 236
BsaAI YACGTR 3 cut(s) 356, 547, 1182
BsaBI GATNNNNATC 3 cut(s) 1230, 1302, 1395
BsaJI CCNNGG 3 cut(s) 652, 1564, 1571
Bsc4I CCNNNNNNNGG 2 cut(s) 276, 1595
Bse118I RCCGGY 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 1775
Bse8I GATNNNNATC 3 cut(s) 1230, 1302, 1395
BseBI CCWGG 1 cut(s) 1566
BseDI CCNNGG 3 cut(s) 652, 1564, 1571
BseGI GGATG 8 cut(s) 61, 793, 931, 1005, 1237, 1565, 1581, 1585
BseJI GATNNNNATC 3 cut(s) 1230, 1302, 1395
BseLI CCNNNNNNNGG 2 cut(s) 276, 1595
BseMII CTCAG 1 cut(s) 913
BseNI ACTGG 1 cut(s) 1775
BseSI GKGCMC 1 cut(s) 813
BseXI GCAGC 1 cut(s) 1342
BsgI GTGCAG 1 cut(s) 1600
Bsh1236I CGCG 2 cut(s) 275, 601
BshFI GGCC 2 cut(s) 229, 280
BsiHKAI GWGCWC 2 cut(s) 113, 801
BsiHKCI CYCGRG 1 cut(s) 1471
BsiSI CCGG 1 cut(s) 226
BsiWI CGTACG 1 cut(s) 1182
BslFI GGGAC 3 cut(s) 444, 1781, 1787
BslI CCNNNNNNNGG 2 cut(s) 276, 1595
BsmAI GTCTC 3 cut(s) 479, 1451, 1517
BsmFI GGGAC 3 cut(s) 444, 1781, 1787
BsmI GAATGC 2 cut(s) 206, 563
BsnI GGCC 2 cut(s) 229, 280
BsoBI CYCGRG 1 cut(s) 1471
Bsp119I TTCGAA 1 cut(s) 450
Bsp1286I GDGCHC 3 cut(s) 113, 801, 813
Bsp143I GATC 8 cut(s) 58, 255, 699, 835, 1225, 1390, 1672, 1699
BspACI CCGC 2 cut(s) 535, 599
BspANI GGCC 2 cut(s) 229, 280
BspCNI CTCAG 1 cut(s) 912
BspFNI CGCG 2 cut(s) 275, 601
BspHI TCATGA 4 cut(s) 55, 622, 883, 1153
BspLI GGNNCC 3 cut(s) 48, 432, 1212
BspPI GGATC 1 cut(s) 830
BspQI GCTCTTC 1 cut(s) 882
BspT104I TTCGAA 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 225
BsrI ACTGG 1 cut(s) 1775
BssAI RCCGGY 1 cut(s) 225
BssECI CCNNGG 3 cut(s) 652, 1564, 1571
BssMI GATC 8 cut(s) 58, 255, 699, 835, 1225, 1390, 1672, 1699
BssSI CACGAG 2 cut(s) 464, 1345
BssT1I CCWWGG 2 cut(s) 652, 1571
Bst2BI CACGAG 2 cut(s) 464, 1345
Bst2UI CCWGG 1 cut(s) 1566
Bst4CI ACNGT 7 cut(s) 46, 263, 293, 971, 1094, 1215, 1321
Bst6I CTCTTC 3 cut(s) 133, 221, 882
BstAPI GCANNNNNTGC 2 cut(s) 390, 1350
BstBAI YACGTR 3 cut(s) 356, 547, 1182
BstBI TTCGAA 1 cut(s) 450
BstDEI CTNAG 4 cut(s) 120, 137, 899, 1508
BstEII GGTNACC 2 cut(s) 971, 1088
BstF5I GGATG 8 cut(s) 61, 793, 931, 1005, 1237, 1565, 1581, 1585
BstFNI CGCG 2 cut(s) 275, 601
BstHHI GCGC 1 cut(s) 1355
BstKTI GATC 8 cut(s) 61, 258, 702, 838, 1228, 1393, 1675, 1702
BstMAI GTCTC 3 cut(s) 479, 1451, 1517
BstMBI GATC 8 cut(s) 58, 255, 699, 835, 1225, 1390, 1672, 1699
BstMWI GCNNNNNNNGC 4 cut(s) 108, 390, 987, 1350
BstNI CCWGG 1 cut(s) 1566
BstNSI RCATGY 2 cut(s) 896, 940
BstPI GGTNACC 2 cut(s) 971, 1088
BstSCI CCNGG 1 cut(s) 1564
BstSFI CTRYAG 1 cut(s) 982
BstSLI GKGCMC 1 cut(s) 813
BstSNI TACGTA 3 cut(s) 356, 547, 1182
BstUI CGCG 2 cut(s) 275, 601
BstV1I GCAGC 1 cut(s) 1342
BstV2I GAAGAC 2 cut(s) 701, 1142
BstX2I RGATCY 4 cut(s) 255, 835, 1672, 1699
BstYI RGATCY 4 cut(s) 255, 835, 1672, 1699
BsuRI GGCC 2 cut(s) 229, 280
BtgZI GCGATG 1 cut(s) 614
BtsCI GGATG 8 cut(s) 61, 793, 931, 1005, 1237, 1565, 1581, 1585
CciI TCATGA 4 cut(s) 55, 622, 883, 1153
CfoI GCGC 1 cut(s) 1355
Cfr10I RCCGGY 1 cut(s) 225
Cfr13I GGNCC 3 cut(s) 431, 571, 1568
Csp6I GTAC 6 cut(s) 171, 1183, 1317, 1529, 1583, 1662
CviQI GTAC 6 cut(s) 171, 1183, 1317, 1529, 1583, 1662
DdeI CTNAG 4 cut(s) 120, 137, 899, 1508
DpnI GATC 8 cut(s) 60, 257, 701, 837, 1227, 1392, 1674, 1701
DpnII GATC 8 cut(s) 58, 255, 699, 835, 1225, 1390, 1672, 1699
DraIII CACNNNGTG 2 cut(s) 1350, 1623
DrdI GACNNNNNNGTC 1 cut(s) 1781
DseDI GACNNNNNNGTC 1 cut(s) 1781
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 3 cut(s) 133, 221, 882
EarI CTCTTC 3 cut(s) 133, 221, 882
Ecl136II GAGCTC 1 cut(s) 799
Eco105I TACGTA 3 cut(s) 356, 547, 1182
Eco130I CCWWGG 2 cut(s) 652, 1571
Eco24I GRGCYC 1 cut(s) 801
Eco32I GATATC 1 cut(s) 868
Eco47I GGWCC 3 cut(s) 431, 571, 1568
Eco53kI GAGCTC 1 cut(s) 799
Eco88I CYCGRG 1 cut(s) 1471
Eco91I GGTNACC 2 cut(s) 971, 1088
EcoICRI GAGCTC 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 1568
EcoO65I GGTNACC 2 cut(s) 971, 1088
EcoRII CCWGG 1 cut(s) 1564
EcoRV GATATC 1 cut(s) 868
EcoT14I CCWWGG 2 cut(s) 652, 1571
EcoT38I GRGCYC 1 cut(s) 801
ErhI CCWWGG 2 cut(s) 652, 1571
FalI AAGNNNNNCTT 8 cut(s) 136, 168, 288, 320, 1631, 1663, 1659, 1691
FaqI GGGAC 3 cut(s) 444, 1781, 1787
FbaI TGATCA 2 cut(s) 58, 1390
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 1356
FokI GGATG 8 cut(s) 48, 800, 938, 992, 1224, 1572, 1572, 1588
FriOI GRGCYC 1 cut(s) 801
Fsp4HI GCNGC 1 cut(s) 1356
FspBI CTAG 3 cut(s) 23, 741, 1572
GlaI GCGC 1 cut(s) 1354
GluI GCNGC 1 cut(s) 1356
HaeIII GGCC 2 cut(s) 229, 280
HapII CCGG 1 cut(s) 226
HhaI GCGC 1 cut(s) 1355
Hin6I GCGC 1 cut(s) 1353
HinP1I GCGC 1 cut(s) 1353
HincII GTYRAC 2 cut(s) 208, 323
HindII GTYRAC 2 cut(s) 208, 323
HindIII AAGCTT 2 cut(s) 329, 1110
HinfI GANTC 8 cut(s) 4, 95, 592, 603, 1027, 1303, 1743, 1782
HpaII CCGG 1 cut(s) 226
HphI GGTGA 7 cut(s) 469, 490, 641, 983, 1211, 1445, 1725
Hpy166II GTNNAC 5 cut(s) 171, 208, 323, 574, 1529
Hpy188I TCNGA 6 cut(s) 591, 693, 902, 1210, 1559, 1760
Hpy8I GTNNAC 5 cut(s) 171, 208, 323, 574, 1529
Hpy99I CGWCG 1 cut(s) 327
HpyAV CCTTC 5 cut(s) 280, 659, 1019, 1151, 1657
HpyCH4III ACNGT 7 cut(s) 46, 263, 293, 971, 1094, 1215, 1321
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 390, 987, 1350
HpyF3I CTNAG 4 cut(s) 120, 137, 899, 1508
HspAI GCGC 1 cut(s) 1353
Ksp22I TGATCA 2 cut(s) 58, 1390
Kzo9I GATC 8 cut(s) 58, 255, 699, 835, 1225, 1390, 1672, 1699
LguI GCTCTTC 1 cut(s) 882
LpnPI CCDG 8 cut(s) 21, 239, 294, 300, 1071, 1551, 1578, 1756
Lsp1109I GCAGC 1 cut(s) 1342
LweI GCATC 4 cut(s) 919, 977, 1240, 1550
MaeI CTAG 3 cut(s) 23, 741, 1572
MalI GATC 8 cut(s) 60, 257, 701, 837, 1227, 1392, 1674, 1701
MboI GATC 8 cut(s) 58, 255, 699, 835, 1225, 1390, 1672, 1699
MfeI CAATTG 1 cut(s) 703
MflI RGATCY 4 cut(s) 255, 835, 1672, 1699
MhlI GDGCHC 3 cut(s) 113, 801, 813
MluCI AATT 7 cut(s) 444, 562, 703, 849, 1312, 1628, 1720
MlyI GAGTC 2 cut(s) 612, 1791
MmeI TCCRAC 4 cut(s) 43, 671, 1236, 1537
MnlI CCTC 6 cut(s) 224, 230, 491, 710, 1044, 1341
MroXI GAANNNNTTC 1 cut(s) 1215
MseI TTAA 5 cut(s) 419, 488, 852, 1719, 1789
MslI CAYNNNNRTG 3 cut(s) 235, 401, 1383
MspI CCGG 1 cut(s) 226
MspR9I CCNGG 1 cut(s) 1566
MunI CAATTG 1 cut(s) 703
Mva1269I GAATGC 2 cut(s) 206, 563
MvaI CCWGG 1 cut(s) 1566
MvnI CGCG 2 cut(s) 275, 601
MwoI GCNNNNNNNGC 4 cut(s) 108, 390, 987, 1350
NdeII GATC 8 cut(s) 58, 255, 699, 835, 1225, 1390, 1672, 1699
NlaIV GGNNCC 3 cut(s) 48, 432, 1212
NmeAIII GCCGAG 1 cut(s) 328
NmuCI GTSAC 6 cut(s) 496, 971, 1115, 1274, 1401, 1433
NspI RCATGY 2 cut(s) 896, 940
NspV TTCGAA 1 cut(s) 450
OliI CACNNNNGTG 1 cut(s) 1383
PagI TCATGA 4 cut(s) 55, 622, 883, 1153
PciSI GCTCTTC 1 cut(s) 882
PcsI WCGNNNNNNNCGW 2 cut(s) 447, 1042
PctI GAATGC 2 cut(s) 206, 563
PdmI GAANNNNTTC 1 cut(s) 1215
PfeI GAWTC 5 cut(s) 95, 592, 1027, 1303, 1743
Pfl23II CGTACG 1 cut(s) 1182
PkrI GCNGC 1 cut(s) 1357
PleI GAGTC 2 cut(s) 611, 1790
PpsI GAGTC 2 cut(s) 611, 1790
Ppu21I YACGTR 3 cut(s) 356, 547, 1182
PpuMI RGGWCCY 1 cut(s) 1568
PshBI ATTAAT 1 cut(s) 852
PsiI TTATAA 1 cut(s) 723
Psp124BI GAGCTC 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 1568
Psp6I CCWGG 1 cut(s) 1564
PspEI GGTNACC 2 cut(s) 971, 1088
PspGI CCWGG 1 cut(s) 1564
PspLI CGTACG 1 cut(s) 1182
PspN4I GGNNCC 3 cut(s) 48, 432, 1212
PspPI GGNCC 3 cut(s) 431, 571, 1568
PspPPI RGGWCCY 1 cut(s) 1568
PsuI RGATCY 4 cut(s) 255, 835, 1672, 1699
RsaI GTAC 6 cut(s) 172, 1184, 1318, 1530, 1584, 1663
RsaNI GTAC 6 cut(s) 171, 1183, 1317, 1529, 1583, 1662
RseI CAYNNNNRTG 3 cut(s) 235, 401, 1383
SacI GAGCTC 1 cut(s) 801
SalI GTCGAC 1 cut(s) 321
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 5 cut(s) 419, 488, 852, 1719, 1789
SatI GCNGC 1 cut(s) 1356
Sau3AI GATC 8 cut(s) 58, 255, 699, 835, 1225, 1390, 1672, 1699
Sau96I GGNCC 3 cut(s) 431, 571, 1568
SchI GAGTC 2 cut(s) 612, 1791
ScrFI CCNGG 1 cut(s) 1566
SduI GDGCHC 3 cut(s) 113, 801, 813
SfaNI GCATC 4 cut(s) 919, 977, 1240, 1550
SfcI CTRYAG 1 cut(s) 982
SfuI TTCGAA 1 cut(s) 450
SinI GGWCC 3 cut(s) 431, 571, 1568
SmiMI CAYNNNNRTG 3 cut(s) 235, 401, 1383
SmlI CTYRAG 2 cut(s) 251, 1777
SmoI CTYRAG 2 cut(s) 251, 1777
SnaBI TACGTA 3 cut(s) 356, 547, 1182
Sse9I AATT 7 cut(s) 444, 562, 703, 849, 1312, 1628, 1720
SsiI CCGC 2 cut(s) 535, 599
SspMI CTAG 3 cut(s) 23, 741, 1572
SstI GAGCTC 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 1564
StyI CCWWGG 2 cut(s) 652, 1571
TaaI ACNGT 7 cut(s) 46, 263, 293, 971, 1094, 1215, 1321
TaqI TCGA 8 cut(s) 322, 450, 801, 831, 1036, 1082, 1606, 1752
TasI AATT 7 cut(s) 444, 562, 703, 849, 1312, 1628, 1720
TatI WGTACW 2 cut(s) 1528, 1582
TfiI GAWTC 5 cut(s) 95, 592, 1027, 1303, 1743
Tru1I TTAA 5 cut(s) 419, 488, 852, 1719, 1789
Tru9I TTAA 5 cut(s) 419, 488, 852, 1719, 1789
TseFI GTSAC 6 cut(s) 496, 971, 1115, 1274, 1401, 1433
TseI GCWGC 1 cut(s) 1355
Tsp45I GTSAC 6 cut(s) 496, 971, 1115, 1274, 1401, 1433
TspGWI ACGGA 3 cut(s) 188, 354, 938
VpaK11BI GGWCC 3 cut(s) 431, 571, 1568
VspI ATTAAT 1 cut(s) 852
XceI RCATGY 2 cut(s) 896, 940
XmaJI CCTAGG 1 cut(s) 1571
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 1215
XspI CTAG 3 cut(s) 23, 741, 1572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.