BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C1_2 | PF03107 | 65 - 108 | 3.2e-09 | C1 domain |
| C1_2 | PF03107 | 122 - 165 | 1.8e-08 | C1 domain |
| C1_2 | PF03107 | 174 - 222 | 6.5e-07 | C1 domain |
| C1_2 | PF03107 | 285 - 333 | 9.6e-08 | C1 domain |
| C1_2 | PF03107 | 368 - 417 | 1.5e-11 | C1 domain |
| C1_2 | PF03107 | 532 - 579 | 2.4e-10 | C1 domain |
| C1-like_CT | PF22926 | 600 - 642 | 7.3e-15 | C1 domain-like, C-terminal |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 997 |
| AccI | GTMKAC | 2 cut(s) | 105, 1902 |
| AccII | CGCG | 3 cut(s) | 761, 924, 1157 |
| AciI | CCGC | 7 cut(s) | 87, 111, 276, 341, 759, 912, 922 |
| AclWI | GGATC | 3 cut(s) | 68, 1193, 1670 |
| AcoI | YGGCCR | 1 cut(s) | 1444 |
| AcsI | RAATTY | 2 cut(s) | 741, 1796 |
| AcvI | CACGTG | 1 cut(s) | 484 |
| AdeI | CACNNNGTG | 1 cut(s) | 1169 |
| AflIII | ACRYGT | 3 cut(s) | 74, 296, 1155 |
| AgsI | TTSAA | 6 cut(s) | 307, 353, 391, 907, 1072, 1297 |
| AjiI | CACGTC | 1 cut(s) | 1754 |
| AjnI | CCWGG | 3 cut(s) | 228, 895, 1762 |
| AluBI | AGCT | 9 cut(s) | 22, 143, 310, 547, 782, 889, 1701, 1883, 1943 |
| AluI | AGCT | 9 cut(s) | 22, 143, 310, 547, 782, 889, 1701, 1883, 1943 |
| Alw21I | GWGCWC | 2 cut(s) | 39, 1605 |
| Alw26I | GTCTC | 4 cut(s) | 1264, 1658, 1760, 1870 |
| AlwI | GGATC | 3 cut(s) | 68, 1193, 1670 |
| AoxI | GGCC | 5 cut(s) | 168, 226, 408, 892, 1444 |
| ApeKI | GCWGC | 3 cut(s) | 84, 1129, 1839 |
| ApoI | RAATTY | 2 cut(s) | 741, 1796 |
| AspLEI | GCGC | 4 cut(s) | 164, 763, 998, 1565 |
| AspS9I | GGNCC | 4 cut(s) | 169, 409, 443, 893 |
| AsuHPI | GGTGA | 5 cut(s) | 211, 330, 1094, 1364, 1637 |
| AvaII | GGWCC | 1 cut(s) | 443 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 853, 886, 1336, 1369 |
| BalI | TGGCCA | 1 cut(s) | 1446 |
| BauI | CACGAG | 2 cut(s) | 32, 1274 |
| BbrPI | CACGTG | 1 cut(s) | 484 |
| BbsI | GAAGAC | 1 cut(s) | 1899 |
| Bbv12I | GWGCWC | 2 cut(s) | 39, 1605 |
| BbvCI | CCTCAGC | 1 cut(s) | 165 |
| BbvI | GCAGC | 3 cut(s) | 71, 1116, 1851 |
| BccI | CCATC | 6 cut(s) | 181, 343, 381, 504, 873, 1013 |
| BceAI | ACGGC | 3 cut(s) | 124, 1414, 1647 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1818, 1852 |
| BciT130I | CCWGG | 3 cut(s) | 230, 897, 1764 |
| BcoDI | GTCTC | 4 cut(s) | 1264, 1658, 1760, 1870 |
| BfaI | CTAG | 4 cut(s) | 531, 1566, 1739, 1944 |
| BfmI | CTRYAG | 1 cut(s) | 1207 |
| BglII | AGATCT | 1 cut(s) | 235 |
| BisI | GCNGC | 5 cut(s) | 85, 276, 922, 1130, 1840 |
| BlsI | GCNGC | 5 cut(s) | 86, 277, 923, 1131, 1841 |
| Bme1390I | CCNGG | 3 cut(s) | 230, 897, 1764 |
| Bme18I | GGWCC | 1 cut(s) | 443 |
| BmgBI | CACGTC | 1 cut(s) | 1754 |
| BmgT120I | GGNCC | 4 cut(s) | 169, 409, 443, 893 |
| BmiI | GGNNCC | 3 cut(s) | 171, 411, 757 |
| BmrFI | CCNGG | 3 cut(s) | 230, 897, 1764 |
| BmrI | ACTGGG | 1 cut(s) | 997 |
| BmsI | GCATC | 7 cut(s) | 455, 563, 724, 1152, 1388, 1462, 1847 |
| BmuI | ACTGGG | 1 cut(s) | 997 |
| BpiI | GAAGAC | 1 cut(s) | 1899 |
| Bpu10I | CCTNAGC | 1 cut(s) | 165 |
| BpuEI | CTTGAG | 2 cut(s) | 527, 822 |
| BsaAI | YACGTR | 1 cut(s) | 484 |
| BsaI | GGTCTC | 1 cut(s) | 1870 |
| BsaJI | CCNNGG | 3 cut(s) | 229, 658, 895 |
| Bse1I | ACTGG | 2 cut(s) | 992, 1369 |
| Bse3DI | GCAATG | 4 cut(s) | 130, 1498, 1537, 1718 |
| BseBI | CCWGG | 3 cut(s) | 230, 897, 1764 |
| BseDI | CCNNGG | 3 cut(s) | 229, 658, 895 |
| BseGI | GGATG | 8 cut(s) | 205, 355, 373, 470, 517, 535, 1024, 1453 |
| BseMI | GCAATG | 4 cut(s) | 130, 1498, 1537, 1718 |
| BseMII | CTCAG | 5 cut(s) | 156, 168, 570, 1035, 1416 |
| BseNI | ACTGG | 2 cut(s) | 992, 1369 |
| BseRI | GAGGAG | 1 cut(s) | 416 |
| BseXI | GCAGC | 3 cut(s) | 71, 1116, 1851 |
| BsgI | GTGCAG | 1 cut(s) | 1115 |
| Bsh1236I | CGCG | 3 cut(s) | 761, 924, 1157 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1191 |
| BshFI | GGCC | 5 cut(s) | 170, 228, 410, 894, 1446 |
| BsiEI | CGRYCG | 1 cut(s) | 1191 |
| BsiHKAI | GWGCWC | 2 cut(s) | 39, 1605 |
| BsiWI | CGTACG | 1 cut(s) | 1158 |
| BslFI | GGGAC | 2 cut(s) | 276, 1051 |
| BsmAI | GTCTC | 4 cut(s) | 1264, 1658, 1760, 1870 |
| BsmBI | CGTCTC | 1 cut(s) | 1760 |
| BsmFI | GGGAC | 2 cut(s) | 276, 1051 |
| BsmI | GAATGC | 2 cut(s) | 998, 1736 |
| BsnI | GGCC | 5 cut(s) | 170, 228, 410, 894, 1446 |
| Bso31I | GGTCTC | 1 cut(s) | 1870 |
| Bsp1286I | GDGCHC | 2 cut(s) | 39, 1605 |
| Bsp1407I | TGTACA | 2 cut(s) | 1178, 1405 |
| BspACI | CCGC | 7 cut(s) | 87, 111, 276, 341, 759, 912, 922 |
| BspANI | GGCC | 5 cut(s) | 170, 228, 410, 894, 1446 |
| BspCNI | CTCAG | 5 cut(s) | 157, 169, 571, 1036, 1417 |
| BspFNI | CGCG | 3 cut(s) | 761, 924, 1157 |
| BspHI | TCATGA | 3 cut(s) | 367, 1108, 1150 |
| BspLI | GGNNCC | 3 cut(s) | 171, 411, 757 |
| BspPI | GGATC | 3 cut(s) | 68, 1193, 1670 |
| BspTNI | GGTCTC | 1 cut(s) | 1870 |
| BsrDI | GCAATG | 4 cut(s) | 130, 1498, 1537, 1718 |
| BsrGI | TGTACA | 2 cut(s) | 1178, 1405 |
| BsrI | ACTGG | 2 cut(s) | 992, 1369 |
| BssECI | CCNNGG | 3 cut(s) | 229, 658, 895 |
| BssNAI | GTATAC | 1 cut(s) | 1903 |
| BssSI | CACGAG | 2 cut(s) | 32, 1274 |
| BssT1I | CCWWGG | 1 cut(s) | 658 |
| Bst1107I | GTATAC | 1 cut(s) | 1903 |
| Bst2BI | CACGAG | 2 cut(s) | 32, 1274 |
| Bst2UI | CCWGG | 3 cut(s) | 230, 897, 1764 |
| Bst4CI | ACNGT | 7 cut(s) | 137, 857, 1211, 1340, 1349, 1513, 1783 |
| Bst6I | CTCTTC | 1 cut(s) | 1262 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1497 |
| BstAUI | TGTACA | 2 cut(s) | 1178, 1405 |
| BstBAI | YACGTR | 1 cut(s) | 484 |
| BstC8I | GCNNGC | 2 cut(s) | 345, 1498 |
| BstDEI | CTNAG | 7 cut(s) | 165, 177, 579, 1044, 1124, 1425, 1473 |
| BstF5I | GGATG | 8 cut(s) | 205, 355, 373, 470, 517, 535, 1024, 1453 |
| BstFNI | CGCG | 3 cut(s) | 761, 924, 1157 |
| BstHHI | GCGC | 4 cut(s) | 164, 763, 998, 1565 |
| BstMAI | GTCTC | 4 cut(s) | 1264, 1658, 1760, 1870 |
| BstMCI | CGRYCG | 1 cut(s) | 1191 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 918, 1497, 1659, 1848, 1857 |
| BstNI | CCWGG | 3 cut(s) | 230, 897, 1764 |
| BstNSI | RCATGY | 6 cut(s) | 78, 300, 1179, 1500, 1727, 1846 |
| BstSCI | CCNGG | 3 cut(s) | 228, 895, 1762 |
| BstSFI | CTRYAG | 1 cut(s) | 1207 |
| BstUI | CGCG | 3 cut(s) | 761, 924, 1157 |
| BstV1I | GCAGC | 3 cut(s) | 71, 1116, 1851 |
| BstV2I | GAAGAC | 1 cut(s) | 1899 |
| BstX2I | RGATCY | 2 cut(s) | 235, 1675 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 229, 1686 |
| BstYI | RGATCY | 2 cut(s) | 235, 1675 |
| BstZ17I | GTATAC | 1 cut(s) | 1903 |
| BsuRI | GGCC | 5 cut(s) | 170, 228, 410, 894, 1446 |
| BtgZI | GCGATG | 1 cut(s) | 535 |
| BtrI | CACGTC | 1 cut(s) | 1754 |
| BtsCI | GGATG | 8 cut(s) | 205, 355, 373, 470, 517, 535, 1024, 1453 |
| BtsIMutI | CAGTG | 1 cut(s) | 985 |
| Cac8I | GCNNGC | 2 cut(s) | 345, 1498 |
| CciI | TCATGA | 3 cut(s) | 367, 1108, 1150 |
| CfoI | GCGC | 4 cut(s) | 164, 763, 998, 1565 |
| Cfr13I | GGNCC | 4 cut(s) | 169, 409, 443, 893 |
| CseI | GACGC | 3 cut(s) | 481, 1163, 1776 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 470, 505, 1373, 1408 |
| DdeI | CTNAG | 7 cut(s) | 165, 177, 579, 1044, 1124, 1425, 1473 |
| DraIII | CACNNNGTG | 1 cut(s) | 1169 |
| EaeI | YGGCCR | 1 cut(s) | 1444 |
| Eam1104I | CTCTTC | 1 cut(s) | 1262 |
| EarI | CTCTTC | 1 cut(s) | 1262 |
| Eco130I | CCWWGG | 1 cut(s) | 658 |
| Eco31I | GGTCTC | 1 cut(s) | 1870 |
| Eco47I | GGWCC | 1 cut(s) | 443 |
| Eco72I | CACGTG | 1 cut(s) | 484 |
| EcoO109I | RGGNCCY | 2 cut(s) | 169, 409 |
| EcoRII | CCWGG | 3 cut(s) | 228, 895, 1762 |
| EcoT14I | CCWWGG | 1 cut(s) | 658 |
| EcoT22I | ATGCAT | 1 cut(s) | 1498 |
| ErhI | CCWWGG | 1 cut(s) | 658 |
| Esp3I | CGTCTC | 1 cut(s) | 1760 |
| FaqI | GGGAC | 2 cut(s) | 276, 1051 |
| FauI | CCCGC | 1 cut(s) | 104 |
| FauNDI | CATATG | 3 cut(s) | 952, 1518, 1907 |
| FblI | GTMKAC | 2 cut(s) | 105, 1902 |
| Fnu4HI | GCNGC | 5 cut(s) | 85, 276, 922, 1130, 1840 |
| FokI | GGATG | 8 cut(s) | 192, 342, 360, 477, 504, 522, 1031, 1440 |
| Fsp4HI | GCNGC | 5 cut(s) | 85, 276, 922, 1130, 1840 |
| FspBI | CTAG | 4 cut(s) | 531, 1566, 1739, 1944 |
| FspI | TGCGCA | 1 cut(s) | 997 |
| GlaI | GCGC | 4 cut(s) | 163, 762, 997, 1564 |
| GluI | GCNGC | 5 cut(s) | 85, 276, 922, 1130, 1840 |
| HaeIII | GGCC | 5 cut(s) | 170, 228, 410, 894, 1446 |
| HgaI | GACGC | 3 cut(s) | 481, 1163, 1776 |
| HhaI | GCGC | 4 cut(s) | 164, 763, 998, 1565 |
| Hin6I | GCGC | 4 cut(s) | 162, 761, 996, 1563 |
| HinP1I | GCGC | 4 cut(s) | 162, 761, 996, 1563 |
| HincII | GTYRAC | 1 cut(s) | 934 |
| HindII | GTYRAC | 1 cut(s) | 934 |
| HindIII | AAGCTT | 2 cut(s) | 1699, 1881 |
| HinfI | GANTC | 6 cut(s) | 128, 431, 560, 1272, 1469, 1713 |
| HphI | GGTGA | 5 cut(s) | 211, 330, 1094, 1364, 1637 |
| Hpy166II | GTNNAC | 7 cut(s) | 106, 257, 443, 602, 934, 985, 1903 |
| Hpy188III | TCNNGA | 7 cut(s) | 32, 368, 860, 1109, 1151, 1325, 1854 |
| Hpy8I | GTNNAC | 7 cut(s) | 106, 257, 443, 602, 934, 985, 1903 |
| HpyAV | CCTTC | 6 cut(s) | 60, 400, 456, 803, 1028, 1133 |
| HpyCH4III | ACNGT | 7 cut(s) | 137, 857, 1211, 1340, 1349, 1513, 1783 |
| HpyCH4IV | ACGT | 3 cut(s) | 117, 483, 1753 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 918, 1497, 1659, 1848, 1857 |
| HpyF3I | CTNAG | 7 cut(s) | 165, 177, 579, 1044, 1124, 1425, 1473 |
| HpySE526I | ACGT | 3 cut(s) | 117, 483, 1753 |
| HspAI | GCGC | 4 cut(s) | 162, 761, 996, 1563 |
| LmnI | GCTCC | 2 cut(s) | 11, 1307 |
| Lsp1109I | GCAGC | 3 cut(s) | 71, 1116, 1851 |
| LweI | GCATC | 7 cut(s) | 455, 563, 724, 1152, 1388, 1462, 1847 |
| MaeI | CTAG | 4 cut(s) | 531, 1566, 1739, 1944 |
| MaeII | ACGT | 3 cut(s) | 117, 483, 1753 |
| MaeIII | GTNAC | 5 cut(s) | 857, 971, 1507, 1538, 1714 |
| MboII | GAAGA | 9 cut(s) | 107, 230, 403, 595, 1067, 1247, 1276, 1279, 1904 |
| MflI | RGATCY | 2 cut(s) | 235, 1675 |
| MhlI | GDGCHC | 2 cut(s) | 39, 1605 |
| MlsI | TGGCCA | 1 cut(s) | 1446 |
| MluCI | AATT | 5 cut(s) | 741, 927, 1028, 1298, 1796 |
| MluI | ACGCGT | 1 cut(s) | 1155 |
| MluNI | TGGCCA | 1 cut(s) | 1446 |
| MlyI | GAGTC | 2 cut(s) | 1266, 1722 |
| Mox20I | TGGCCA | 1 cut(s) | 1446 |
| Mph1103I | ATGCAT | 1 cut(s) | 1498 |
| MscI | TGGCCA | 1 cut(s) | 1446 |
| MseI | TTAA | 5 cut(s) | 1371, 1556, 1577, 1812, 1877 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1008 |
| Msp20I | TGGCCA | 1 cut(s) | 1446 |
| MspA1I | CMGCKG | 1 cut(s) | 278 |
| MspR9I | CCNGG | 3 cut(s) | 230, 897, 1764 |
| Mva1269I | GAATGC | 2 cut(s) | 998, 1736 |
| MvaI | CCWGG | 3 cut(s) | 230, 897, 1764 |
| MvnI | CGCG | 3 cut(s) | 761, 924, 1157 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 918, 1497, 1659, 1848, 1857 |
| NdeI | CATATG | 3 cut(s) | 952, 1518, 1907 |
| NlaIV | GGNNCC | 3 cut(s) | 171, 411, 757 |
| NmuCI | GTSAC | 3 cut(s) | 857, 1538, 1714 |
| NsbI | TGCGCA | 1 cut(s) | 997 |
| NsiI | ATGCAT | 1 cut(s) | 1498 |
| NspI | RCATGY | 6 cut(s) | 78, 300, 1179, 1500, 1727, 1846 |
| PaeI | GCATGC | 1 cut(s) | 1500 |
| PagI | TCATGA | 3 cut(s) | 367, 1108, 1150 |
| PciI | ACATGT | 2 cut(s) | 74, 296 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 114, 489 |
| PctI | GAATGC | 2 cut(s) | 998, 1736 |
| PfeI | GAWTC | 4 cut(s) | 128, 431, 560, 1469 |
| Pfl23II | CGTACG | 1 cut(s) | 1158 |
| PkrI | GCNGC | 5 cut(s) | 86, 277, 923, 1131, 1841 |
| Ple19I | CGATCG | 1 cut(s) | 1191 |
| PleI | GAGTC | 2 cut(s) | 1266, 1721 |
| PmaCI | CACGTG | 1 cut(s) | 484 |
| PmlI | CACGTG | 1 cut(s) | 484 |
| PpsI | GAGTC | 2 cut(s) | 1266, 1721 |
| Ppu21I | YACGTR | 1 cut(s) | 484 |
| PscI | ACATGT | 2 cut(s) | 74, 296 |
| Psp6I | CCWGG | 3 cut(s) | 228, 895, 1762 |
| PspCI | CACGTG | 1 cut(s) | 484 |
| PspGI | CCWGG | 3 cut(s) | 228, 895, 1762 |
| PspLI | CGTACG | 1 cut(s) | 1158 |
| PspN4I | GGNNCC | 3 cut(s) | 171, 411, 757 |
| PspPI | GGNCC | 4 cut(s) | 169, 409, 443, 893 |
| PsuI | RGATCY | 2 cut(s) | 235, 1675 |
| PvuI | CGATCG | 1 cut(s) | 1191 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SaqAI | TTAA | 5 cut(s) | 1371, 1556, 1577, 1812, 1877 |
| SatI | GCNGC | 5 cut(s) | 85, 276, 922, 1130, 1840 |
| Sau96I | GGNCC | 4 cut(s) | 169, 409, 443, 893 |
| SchI | GAGTC | 2 cut(s) | 1266, 1722 |
| ScrFI | CCNGG | 3 cut(s) | 230, 897, 1764 |
| SduI | GDGCHC | 2 cut(s) | 39, 1605 |
| SfaNI | GCATC | 7 cut(s) | 455, 563, 724, 1152, 1388, 1462, 1847 |
| SfcI | CTRYAG | 1 cut(s) | 1207 |
| SinI | GGWCC | 1 cut(s) | 443 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1008 |
| SmlI | CTYRAG | 2 cut(s) | 542, 837 |
| SmoI | CTYRAG | 2 cut(s) | 542, 837 |
| SphI | GCATGC | 1 cut(s) | 1500 |
| Sse9I | AATT | 5 cut(s) | 741, 927, 1028, 1298, 1796 |
| SsiI | CCGC | 7 cut(s) | 87, 111, 276, 341, 759, 912, 922 |
| SspMI | CTAG | 4 cut(s) | 531, 1566, 1739, 1944 |
| StyD4I | CCNGG | 3 cut(s) | 228, 895, 1762 |
| StyI | CCWWGG | 1 cut(s) | 658 |
| TaaI | ACNGT | 7 cut(s) | 137, 857, 1211, 1340, 1349, 1513, 1783 |
| TaiI | ACGT | 3 cut(s) | 120, 486, 1756 |
| TaqI | TCGA | 3 cut(s) | 693, 1828, 1855 |
| TasI | AATT | 5 cut(s) | 741, 927, 1028, 1298, 1796 |
| TatI | WGTACW | 6 cut(s) | 71, 474, 665, 1000, 1178, 1405 |
| TauI | GCSGC | 2 cut(s) | 278, 924 |
| TfiI | GAWTC | 4 cut(s) | 128, 431, 560, 1469 |
| Tru1I | TTAA | 5 cut(s) | 1371, 1556, 1577, 1812, 1877 |
| Tru9I | TTAA | 5 cut(s) | 1371, 1556, 1577, 1812, 1877 |
| TscAI | CASTG | 1 cut(s) | 992 |
| TseFI | GTSAC | 3 cut(s) | 857, 1538, 1714 |
| TseI | GCWGC | 3 cut(s) | 84, 1129, 1839 |
| Tsp45I | GTSAC | 3 cut(s) | 857, 1538, 1714 |
| TspGWI | ACGGA | 3 cut(s) | 584, 753, 1858 |
| TspRI | CASTG | 1 cut(s) | 992 |
| VpaK11BI | GGWCC | 1 cut(s) | 443 |
| XapI | RAATTY | 2 cut(s) | 741, 1796 |
| XceI | RCATGY | 6 cut(s) | 78, 300, 1179, 1500, 1727, 1846 |
| XmiI | GTMKAC | 2 cut(s) | 105, 1902 |
| XspI | CTAG | 4 cut(s) | 531, 1566, 1739, 1944 |
| Zsp2I | ATGCAT | 1 cut(s) | 1498 |