MD12G1059900.v1.1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000226
Physical Location & Seq
Reverse (-)
6968567 .. 6969199
633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1059900.v1.1.491

Sequence Viewer

Length: 633 bp
ATGCACTTAGAGATCTTGATTGTACAAATTACTTGTAACGGTTGCATGCAACCCATCACCATGAGCACCGGTGCCTTTTATAGTTGTTGCACCGAAGAAGAACAATGCCGTTTAAAACTACACCAAACCTGTGCTCATTTACCTAGAACAAGGCTTCACCCACTTCATCGACACCAGATCACACTCCTCTCGGCAGCTCCTTCATTTGACAGAGTTTTAAGTGTCATATGTGCCGAAGCTAGAGCCAAGGCTTCTCTTACTATTGTGACAAATGCGACTTATACCTTGACCTCCAACGCATTTCTGTTTCAAACCCTCTTAAGCATGACGCTCTTCTTCAACTTTCATCCGAACAAAGAAGATTGCAAGGGTTGTGGTATTTCTCTTACGGACGTACGCTTCGGTTGTATCAAGTGTAACTTCCATTGTTGTGTTGCATGTGTTAAACTACCTCTTACTGCAAGGTACAGAAACCTCAATCTTACCCTCAACCTCACCTATCATCCGGTTCCAAACAAACTAGGTGAATATTATTGCGAAATATGTGAAGGAGAACGAGATCCTACACATTGGTTCTACTCCTCTACAGATTGCAACTTTGATTGCCATCCTCATTGCCATTCCTTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

211

Amino Acids

23.93

Weight (kDa)

7.83

Isoelectric Point (pI)

35.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 71
AclWI GGATC 1 cut(s) 554
AfaI GTAC 3 cut(s) 24, 396, 467
AflII CTTAAG 1 cut(s) 319
AgeI ACCGGT 1 cut(s) 68
AgsI TTSAA 2 cut(s) 311, 340
AluBI AGCT 2 cut(s) 197, 239
AluI AGCT 2 cut(s) 197, 239
Alw21I GWGCWC 2 cut(s) 68, 136
AlwI GGATC 1 cut(s) 554
ApeKI GCWGC 1 cut(s) 194
ArsI GACNNNNNNTTYG 2 cut(s) 383, 415
AsiGI ACCGGT 1 cut(s) 68
AsuHPI GGTGA 4 cut(s) 49, 149, 487, 536
BanI GGYRCC 1 cut(s) 71
Bbv12I GWGCWC 2 cut(s) 68, 136
BbvI GCAGC 1 cut(s) 206
BccI CCATC 2 cut(s) 62, 615
BceAI ACGGC 1 cut(s) 93
BfaI CTAG 3 cut(s) 144, 240, 521
BfmI CTRYAG 1 cut(s) 585
BfrI CTTAAG 1 cut(s) 319
BglII AGATCT 1 cut(s) 12
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 73, 510
BsaBI GATNNNNATC 1 cut(s) 606
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 2 cut(s) 68, 505
Bse118I RCCGGY 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 613
Bse8I GATNNNNATC 1 cut(s) 606
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 346, 502, 607
BseJI GATNNNNATC 1 cut(s) 606
BseMI GCAATG 1 cut(s) 613
BseRI GAGGAG 2 cut(s) 176, 571
BseXI GCAGC 1 cut(s) 206
BshNI GGYRCC 1 cut(s) 71
BshTI ACCGGT 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 68, 136
BsiSI CCGG 2 cut(s) 69, 506
BsiWI CGTACG 1 cut(s) 394
Bsp1286I GDGCHC 2 cut(s) 68, 136
Bsp1407I TGTACA 1 cut(s) 22
Bsp143I GATC 3 cut(s) 12, 177, 559
BspLI GGNNCC 2 cut(s) 73, 510
BspPI GGATC 1 cut(s) 554
BspQI GCTCTTC 1 cut(s) 338
BspT107I GGYRCC 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 319
BsrDI GCAATG 1 cut(s) 613
BsrFI RCCGGY 1 cut(s) 68
BsrGI TGTACA 1 cut(s) 22
BssAI RCCGGY 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 3 cut(s) 12, 177, 559
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 338
BstAFI CTTAAG 1 cut(s) 319
BstAUI TGTACA 1 cut(s) 22
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 1 cut(s) 7
BstF5I GGATG 3 cut(s) 346, 502, 607
BstKTI GATC 3 cut(s) 15, 180, 562
BstMBI GATC 3 cut(s) 12, 177, 559
BstNSI RCATGY 2 cut(s) 49, 441
BstSFI CTRYAG 1 cut(s) 585
BstV1I GCAGC 1 cut(s) 206
BstX2I RGATCY 2 cut(s) 12, 559
BstYI RGATCY 2 cut(s) 12, 559
BtsCI GGATG 3 cut(s) 346, 502, 607
Cac8I GCNNGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 68
CseI GACGC 1 cut(s) 337
Csp6I GTAC 3 cut(s) 23, 395, 466
CspAI ACCGGT 1 cut(s) 68
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 4 cut(s) 46, 61, 325, 438
CviJI RGCY 5 cut(s) 154, 197, 239, 245, 251
CviKI_1 RGCY 5 cut(s) 154, 197, 239, 245, 251
CviQI GTAC 3 cut(s) 23, 395, 466
DdeI CTNAG 1 cut(s) 7
DpnI GATC 3 cut(s) 14, 179, 561
DpnII GATC 3 cut(s) 12, 177, 559
DraI TTTAAA 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
Eco130I CCWWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 49, 64, 328, 441
FaiI YATR 9 cut(s) 47, 62, 81, 227, 229, 282, 326, 439, 544
FalI AAGNNNNNCTT 2 cut(s) 404, 436
FatI CATG 4 cut(s) 45, 60, 324, 437
FauNDI CATATG 1 cut(s) 227
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 3 cut(s) 333, 489, 594
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 3 cut(s) 144, 240, 521
GluI GCNGC 1 cut(s) 195
HapII CCGG 2 cut(s) 69, 506
HgaI GACGC 1 cut(s) 337
Hin1II CATG 4 cut(s) 49, 64, 328, 441
HpaII CCGG 2 cut(s) 69, 506
HphI GGTGA 4 cut(s) 49, 149, 487, 536
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 1 cut(s) 16
HpyAV CCTTC 2 cut(s) 210, 542
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 8 cut(s) 4, 45, 49, 90, 366, 437, 461, 594
HpyF3I CTNAG 1 cut(s) 7
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 4 cut(s) 49, 64, 328, 441
Kzo9I GATC 3 cut(s) 12, 177, 559
LguI GCTCTTC 1 cut(s) 338
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 82, 142, 188, 519
Lsp1109I GCAGC 1 cut(s) 206
MaeI CTAG 3 cut(s) 144, 240, 521
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 3 cut(s) 35, 265, 416
MalI GATC 3 cut(s) 14, 179, 561
MboI GATC 3 cut(s) 12, 177, 559
MboII GAAGA 5 cut(s) 107, 110, 325, 328, 371
MflI RGATCY 2 cut(s) 12, 559
MhlI GDGCHC 2 cut(s) 68, 136
MluCI AATT 1 cut(s) 27
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 9 cut(s) 197, 301, 326, 462, 485, 497, 503, 592, 621
MseI TTAA 4 cut(s) 113, 218, 320, 444
MslI CAYNNNNRTG 2 cut(s) 59, 429
MspCI CTTAAG 1 cut(s) 319
MspI CCGG 2 cut(s) 69, 506
NdeI CATATG 1 cut(s) 227
NdeII GATC 3 cut(s) 12, 177, 559
NlaIII CATG 4 cut(s) 49, 64, 328, 441
NlaIV GGNNCC 2 cut(s) 73, 510
NmeAIII GCCGAG 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 265
NspI RCATGY 2 cut(s) 49, 441
PaeI GCATGC 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 338
Pfl23II CGTACG 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 68
PkrI GCNGC 1 cut(s) 196
PspLI CGTACG 1 cut(s) 394
PspN4I GGNNCC 2 cut(s) 73, 510
PsuI RGATCY 2 cut(s) 12, 559
RsaI GTAC 3 cut(s) 24, 396, 467
RsaNI GTAC 3 cut(s) 23, 395, 466
RseI CAYNNNNRTG 2 cut(s) 59, 429
SapI GCTCTTC 1 cut(s) 338
SaqAI TTAA 4 cut(s) 113, 218, 320, 444
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 3 cut(s) 12, 177, 559
SduI GDGCHC 2 cut(s) 68, 136
SfcI CTRYAG 1 cut(s) 585
SgrAI CRCCGGYG 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 59, 429
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
SphI GCATGC 1 cut(s) 49
Sse9I AATT 1 cut(s) 27
SspI AATATT 1 cut(s) 530
SspMI CTAG 3 cut(s) 144, 240, 521
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 1 cut(s) 396
TaqI TCGA 2 cut(s) 169, 628
TasI AATT 1 cut(s) 27
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 4 cut(s) 113, 218, 320, 444
Tru9I TTAA 4 cut(s) 113, 218, 320, 444
TseFI GTSAC 1 cut(s) 265
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 265
TspDTI ATGAA 3 cut(s) 155, 192, 335
TspGWI ACGGA 1 cut(s) 404
Vha464I CTTAAG 1 cut(s) 319
XceI RCATGY 2 cut(s) 49, 441
XspI CTAG 3 cut(s) 144, 240, 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.