RLG00000023512

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000226
Physical Location & Seq
Forward (+)
24783585 .. 24785373
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023512

Sequence Viewer

Length: 882 bp
ATGGATCAGCTTCAACATTTCAATCACGTCCATCCATTGATGTTTGAGGAAGGGAAGCAGAAAAATCAAGACGGTGCAGCAATAGTTTGCTCTGCATGTGGAGACCTAGTGCTTGGTCCTGCTACATTTGCAACCAGTGTTCCAAATTACGCTCATGATCCCCTGGAAGGGGAGCAGAAAAATGAAGACGGTGCAGCAGCAGCAACAGGTCCACCAGTTGTATGCTTTGTGTGTGGGGATGCAGTACTTGGTCCTAGCTCCAGTTGCAACCAGTGTTCCAAATTATTTATTCTCCACAAGTCATGTGCGGAGCTGCCTGGTGAGATGCATCACCCGACACATCGGAAACATCCACTTGTTCTCCTCCCAGATAGATATTACCGTTGTGATATTTGTCGCAAATCTCGTTCTGGCTTATTCTCTTACAAATGTGAGCCATGTGACTTCGACCTTGACCTCCAGTGTGCTTTTGATTTGAGCAAAATAAAATACTTAGAGCACTTCAATCATGAGCATGCACTGATCTTTGTGGAAGATCCAGAAAAACGAGAGGGAGGTTTACCAGTCGTTTGTCAAGGTTGCGGAGAGCACGTGTTAGGTCCAGGCTATTGCTACAGCCGATTTCTCTGCCACTACATTCTGCATAAGTCACGTGCTGAGCTTCCCCGTGAGATGCACCACCCAATACACCGCAAACAGCCACTTATTCTCCTCTCAGGTAGATATTATCGTTGTGATATATGTCGCAAATCTCATTCCAGCTTATTCTCTTACAAATGTAAGCCATGTGACTTCGACATTGACCTCCAATGTTCTTCCCATTTGAGCAATATAAAATGCTTGGAACACTTCAGTCATGAGCATGAACTGATCTTTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

294

Amino Acids

33.21

Weight (kDa)

6.43

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 112 - 156 9.9e-10 C1 domain
C1_2 PF03107 230 - 271 4.6e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 308, 582, 691
AclWI GGATC 3 cut(s) 12, 152, 530
AcuI CTGAAG 1 cut(s) 835
AcvI CACGTG 2 cut(s) 592, 653
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 167, 168, 169
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 3 cut(s) 14, 22, 505
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 3 cut(s) 162, 316, 601
AluBI AGCT 5 cut(s) 10, 258, 313, 661, 762
AluI AGCT 5 cut(s) 10, 258, 313, 661, 762
Alw21I GWGCWC 2 cut(s) 501, 591
Alw26I GTCTC 1 cut(s) 96
AlwI GGATC 3 cut(s) 12, 152, 530
ApeKI GCWGC 5 cut(s) 77, 194, 197, 200, 313
AspS9I GGNCC 4 cut(s) 116, 209, 251, 599
AsuHPI GGTGA 2 cut(s) 323, 332
AvaII GGWCC 4 cut(s) 116, 209, 251, 599
BbrPI CACGTG 2 cut(s) 592, 653
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 501, 591
BbvI GCAGC 5 cut(s) 89, 206, 209, 212, 300
BccI CCATC 1 cut(s) 39
BcgI CGANNNNNNTGC 2 cut(s) 609, 643
BciT130I CCWGG 3 cut(s) 164, 318, 603
BcoDI GTCTC 1 cut(s) 96
BfaI CTAG 2 cut(s) 107, 255
BfmI CTRYAG 1 cut(s) 613
BisI GCNGC 5 cut(s) 78, 195, 198, 201, 314
BlpI GCTNAGC 1 cut(s) 657
BlsI GCNGC 5 cut(s) 79, 196, 199, 202, 315
BmcAI AGTACT 1 cut(s) 246
Bme1390I CCNGG 3 cut(s) 164, 318, 603
Bme18I GGWCC 4 cut(s) 116, 209, 251, 599
BmgBI CACGTC 1 cut(s) 28
BmgT120I GGNCC 4 cut(s) 116, 209, 251, 599
BmrFI CCNGG 3 cut(s) 164, 318, 603
BmsI GCATC 4 cut(s) 229, 315, 337, 663
BpiI GAAGAC 1 cut(s) 192
BpmI CTGGAG 2 cut(s) 244, 443
Bpu1102I GCTNAGC 1 cut(s) 657
BsaAI YACGTR 2 cut(s) 592, 653
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 8 cut(s) 93, 123, 345, 375, 576, 606, 693, 723
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 168, 169
Bse1I ACTGG 6 cut(s) 135, 215, 261, 271, 460, 563
BseBI CCWGG 3 cut(s) 164, 318, 603
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 3 cut(s) 31, 244, 349
BseLI CCNNNNNNNGG 3 cut(s) 167, 168, 169
BseMII CTCAG 2 cut(s) 648, 729
BseNI ACTGG 6 cut(s) 135, 215, 261, 271, 460, 563
BseRI GAGGAG 2 cut(s) 353, 701
BseXI GCAGC 5 cut(s) 89, 206, 209, 212, 300
BsgI GTGCAG 2 cut(s) 96, 213
BsiHKAI GWGCWC 2 cut(s) 501, 591
BslI CCNNNNNNNGG 3 cut(s) 167, 168, 169
BsmAI GTCTC 1 cut(s) 96
Bso31I GGTCTC 1 cut(s) 96
Bsp1286I GDGCHC 2 cut(s) 501, 591
Bsp143I GATC 5 cut(s) 4, 157, 522, 535, 870
Bsp1720I GCTNAGC 1 cut(s) 657
BspACI CCGC 3 cut(s) 308, 582, 691
BspCNI CTCAG 2 cut(s) 649, 728
BspHI TCATGA 3 cut(s) 154, 508, 856
BspPI GGATC 3 cut(s) 12, 152, 530
BspTNI GGTCTC 1 cut(s) 96
BsrI ACTGG 6 cut(s) 135, 215, 261, 271, 460, 563
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 5 cut(s) 4, 157, 522, 535, 870
Bst2UI CCWGG 3 cut(s) 164, 318, 603
Bst4CI ACNGT 3 cut(s) 74, 191, 383
BstBAI YACGTR 2 cut(s) 592, 653
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 3 cut(s) 493, 657, 715
BstF5I GGATG 3 cut(s) 31, 244, 349
BstKTI GATC 5 cut(s) 7, 160, 525, 538, 873
BstMAI GTCTC 1 cut(s) 96
BstMBI GATC 5 cut(s) 4, 157, 522, 535, 870
BstMWI GCNNNNNNNGC 3 cut(s) 128, 200, 264
BstNI CCWGG 3 cut(s) 164, 318, 603
BstNSI RCATGY 2 cut(s) 99, 518
BstSCI CCNGG 3 cut(s) 162, 316, 601
BstSFI CTRYAG 1 cut(s) 613
BstV1I GCAGC 5 cut(s) 89, 206, 209, 212, 300
BstV2I GAAGAC 1 cut(s) 192
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 3 cut(s) 31, 244, 349
BtsIMutI CAGTG 4 cut(s) 142, 278, 467, 518
Cac8I GCNNGC 1 cut(s) 516
CciI TCATGA 3 cut(s) 154, 508, 856
Cfr13I GGNCC 4 cut(s) 116, 209, 251, 599
Csp6I GTAC 1 cut(s) 245
CviAII CATG 9 cut(s) 96, 155, 303, 438, 509, 515, 786, 857, 863
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 3 cut(s) 493, 657, 715
DpnI GATC 5 cut(s) 6, 159, 524, 537, 872
DpnII GATC 5 cut(s) 4, 157, 522, 535, 870
Eco31I GGTCTC 1 cut(s) 96
Eco47I GGWCC 4 cut(s) 116, 209, 251, 599
Eco57I CTGAAG 1 cut(s) 835
Eco72I CACGTG 2 cut(s) 592, 653
EcoRII CCWGG 3 cut(s) 162, 316, 601
EcoT22I ATGCAT 1 cut(s) 330
FaeI CATG 9 cut(s) 99, 158, 306, 441, 512, 518, 789, 860, 866
FatI CATG 9 cut(s) 95, 154, 302, 437, 508, 514, 785, 856, 862
Fnu4HI GCNGC 5 cut(s) 78, 195, 198, 201, 314
FokI GGATG 3 cut(s) 18, 251, 336
Fsp4HI GCNGC 5 cut(s) 78, 195, 198, 201, 314
FspBI CTAG 2 cut(s) 107, 255
GluI GCNGC 5 cut(s) 78, 195, 198, 201, 314
GsuI CTGGAG 2 cut(s) 244, 443
Hin1II CATG 9 cut(s) 99, 158, 306, 441, 512, 518, 789, 860, 866
HphI GGTGA 2 cut(s) 323, 332
Hpy166II GTNNAC 2 cut(s) 212, 560
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 5 cut(s) 68, 155, 509, 539, 857
Hpy8I GTNNAC 2 cut(s) 212, 560
HpyAV CCTTC 2 cut(s) 44, 161
HpyCH4III ACNGT 3 cut(s) 74, 191, 383
HpyCH4IV ACGT 3 cut(s) 27, 591, 652
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 200, 264
HpyF3I CTNAG 3 cut(s) 493, 657, 715
HpySE526I ACGT 3 cut(s) 27, 591, 652
Hsp92II CATG 9 cut(s) 99, 158, 306, 441, 512, 518, 789, 860, 866
Kzo9I GATC 5 cut(s) 4, 157, 522, 535, 870
LmnI GCTCC 3 cut(s) 172, 263, 310
Lsp1109I GCAGC 5 cut(s) 89, 206, 209, 212, 300
LweI GCATC 4 cut(s) 229, 315, 337, 663
MaeI CTAG 2 cut(s) 107, 255
MaeII ACGT 3 cut(s) 27, 591, 652
MaeIII GTNAC 3 cut(s) 440, 648, 788
MalI GATC 5 cut(s) 6, 159, 524, 537, 872
MboI GATC 5 cut(s) 4, 157, 522, 535, 870
MboII GAAGA 3 cut(s) 197, 545, 807
MflI RGATCY 1 cut(s) 535
MhlI GDGCHC 2 cut(s) 501, 591
MluCI AATT 2 cut(s) 145, 281
MnlI CCTC 7 cut(s) 40, 374, 467, 544, 548, 722, 815
Mph1103I ATGCAT 1 cut(s) 330
MslI CAYNNNNRTG 2 cut(s) 513, 861
MspR9I CCNGG 3 cut(s) 164, 318, 603
MvaI CCWGG 3 cut(s) 164, 318, 603
MwoI GCNNNNNNNGC 3 cut(s) 128, 200, 264
NdeII GATC 5 cut(s) 4, 157, 522, 535, 870
NlaIII CATG 9 cut(s) 99, 158, 306, 441, 512, 518, 789, 860, 866
NmuCI GTSAC 3 cut(s) 440, 648, 788
NsiI ATGCAT 1 cut(s) 330
NspI RCATGY 2 cut(s) 99, 518
PaeI GCATGC 1 cut(s) 518
PagI TCATGA 3 cut(s) 154, 508, 856
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PkrI GCNGC 5 cut(s) 79, 196, 199, 202, 315
PmaCI CACGTG 2 cut(s) 592, 653
PmlI CACGTG 2 cut(s) 592, 653
Ppu21I YACGTR 2 cut(s) 592, 653
Psp6I CCWGG 3 cut(s) 162, 316, 601
PspCI CACGTG 2 cut(s) 592, 653
PspGI CCWGG 3 cut(s) 162, 316, 601
PspPI GGNCC 4 cut(s) 116, 209, 251, 599
PsuI RGATCY 1 cut(s) 535
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 2 cut(s) 513, 861
SatI GCNGC 5 cut(s) 78, 195, 198, 201, 314
Sau3AI GATC 5 cut(s) 4, 157, 522, 535, 870
Sau96I GGNCC 4 cut(s) 116, 209, 251, 599
ScaI AGTACT 1 cut(s) 246
ScrFI CCNGG 3 cut(s) 164, 318, 603
SduI GDGCHC 2 cut(s) 501, 591
SfaNI GCATC 4 cut(s) 229, 315, 337, 663
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 4 cut(s) 116, 209, 251, 599
SmiMI CAYNNNNRTG 2 cut(s) 513, 861
SphI GCATGC 1 cut(s) 518
Sse9I AATT 2 cut(s) 145, 281
SsiI CCGC 3 cut(s) 308, 582, 691
SspMI CTAG 2 cut(s) 107, 255
StyD4I CCNGG 3 cut(s) 162, 316, 601
TaaI ACNGT 3 cut(s) 74, 191, 383
TaiI ACGT 3 cut(s) 30, 594, 655
TaqI TCGA 2 cut(s) 447, 795
TasI AATT 2 cut(s) 145, 281
TatI WGTACW 1 cut(s) 244
TscAI CASTG 4 cut(s) 142, 278, 467, 525
TseFI GTSAC 3 cut(s) 440, 648, 788
TseI GCWGC 5 cut(s) 77, 194, 197, 200, 313
Tsp45I GTSAC 3 cut(s) 440, 648, 788
TspDTI ATGAA 2 cut(s) 198, 879
TspRI CASTG 4 cut(s) 142, 278, 467, 525
VpaK11BI GGWCC 4 cut(s) 116, 209, 251, 599
XceI RCATGY 2 cut(s) 99, 518
XspI CTAG 2 cut(s) 107, 255
ZrmI AGTACT 1 cut(s) 246
Zsp2I ATGCAT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.