Rh3DG258100

C1 domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Reverse (-)
25537851 .. 25538195
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG258100.1

Sequence Viewer

Length: 345 bp
ATGTACCGATACGACGATCATCCTCTCAAGCCCACATATGCTAGTGTCGAACATGAGCTAGGCTATTATTGTGAAATATGCGAAGGAAAACGAGATTCAAGACATTGGTTCTACCGCTGCACCGATTGTGACTTTGATTGCCCTACTCATTGCATTCTGGGGAGGTGTCTGCAAGTCAAGCTAGGGAGTACTTACAAGCACGATGCTCATGGTCAACACCCCGTCACCCTTGTTGATAAGTCAAAGAGCCCCATTCCTTTCGATAAGAGAGAAAACATTCTTCCCTGCCAGAAGTGTGGAAAACCTTGTGAAGGATTGTGTTTGAATGTGAAGAGTGCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

13.15

Weight (kDa)

7.54

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 3 - 52 4e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 115
AfaI GTAC 2 cut(s) 5, 190
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 99, 325
AluBI AGCT 2 cut(s) 58, 181
AluI AGCT 2 cut(s) 58, 181
ApeKI GCWGC 1 cut(s) 117
Asp700I GAANNNNTTC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 217
BanII GRGCYC 1 cut(s) 251
BbvI GCAGC 1 cut(s) 104
BfaI CTAG 3 cut(s) 42, 59, 182
BisI GCNGC 1 cut(s) 118
BlsI GCNGC 1 cut(s) 119
BmcAI AGTACT 1 cut(s) 190
BmsI GCATC 1 cut(s) 193
BpuEI CTTGAG 1 cut(s) 11
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse3DI GCAATG 1 cut(s) 148
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 148
BseXI GCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 311
BsmI GAATGC 1 cut(s) 153
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 148
BssMI GATC 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 326
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 1 cut(s) 19
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 104
BstXI CCANNNNNNTGG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 19
Csp6I GTAC 2 cut(s) 4, 189
CviAII CATG 2 cut(s) 53, 209
CviJI RGCY 5 cut(s) 31, 58, 63, 181, 249
CviKI_1 RGCY 5 cut(s) 31, 58, 63, 181, 249
CviQI GTAC 2 cut(s) 4, 189
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
Eco24I GRGCYC 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 2 cut(s) 56, 212
FaiI YATR 6 cut(s) 37, 39, 54, 79, 210, 343
FatI CATG 2 cut(s) 52, 208
FauNDI CATATG 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 118
FokI GGATG 1 cut(s) 6
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 118
FspBI CTAG 3 cut(s) 42, 59, 182
GluI GCNGC 1 cut(s) 118
Hin1II CATG 2 cut(s) 56, 212
HincII GTYRAC 1 cut(s) 215
HindII GTYRAC 1 cut(s) 215
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 99
Hpy8I GTNNAC 1 cut(s) 215
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 77, 305
HpyCH4V TGCA 4 cut(s) 120, 153, 172, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
Hsp92II CATG 2 cut(s) 56, 212
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 143, 298, 302
Lsp1109I GCAGC 1 cut(s) 104
LweI GCATC 1 cut(s) 193
MaeI CTAG 3 cut(s) 42, 59, 182
MaeIII GTNAC 2 cut(s) 128, 223
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 272, 343
MhlI GDGCHC 1 cut(s) 251
MnlI CCTC 2 cut(s) 33, 156
MroXI GAANNNNTTC 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 117
Mva1269I GAATGC 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeI CATATG 1 cut(s) 37
NdeII GATC 1 cut(s) 16
NlaIII CATG 2 cut(s) 56, 212
NmuCI GTSAC 2 cut(s) 128, 223
PctI GAATGC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 276
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 119
RsaI GTAC 2 cut(s) 5, 190
RsaNI GTAC 2 cut(s) 4, 189
SatI GCNGC 1 cut(s) 118
Sau3AI GATC 1 cut(s) 16
ScaI AGTACT 1 cut(s) 190
SduI GDGCHC 1 cut(s) 251
SetI ASST 4 cut(s) 60, 167, 183, 307
SfaNI GCATC 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
SsiI CCGC 1 cut(s) 115
SspMI CTAG 3 cut(s) 42, 59, 182
TaqI TCGA 2 cut(s) 48, 261
TatI WGTACW 1 cut(s) 188
TfiI GAWTC 1 cut(s) 95
TseFI GTSAC 2 cut(s) 128, 223
TseI GCWGC 1 cut(s) 117
Tsp45I GTSAC 2 cut(s) 128, 223
XagI CCTNNNNNAGG 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 276
XspI CTAG 3 cut(s) 42, 59, 182
ZrmI AGTACT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.