AT2G21810

Cysteine Histidine-rich C1 domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000226
Physical Location & Seq
Forward (+)
9302254 .. 9302640
387 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21810.1

Sequence Viewer

Length: 387 bp
ATGCATGTTATGAAACCAGTCCTCATGAGTGCTCTTGATAAATATCCATATTGCAAGATATGTGGAGGAAACATACTTGGTAACCCATGGAAATGTGAGACCTGCCGCTTCGAGACACATCAGTACTGTGTGGAGTTGGGGCGACCATCAAGACATCGATTTCATCAGAACCATCCTTTGACACTGTTGACAAAGTATCCTTCACAGGAAAAGATGAAATGTGACATTTGCAGAGAGAATATATACGATTTCAATCTCTTCTGCCGTATATGTACTTTTGTTATCCACATCAACTGTGCCTTGAAAAGTAAACATGTTCTTGAAGCTTTAAGGCAGAAATTCACTGGAACTTGGAGTTTTTGTTTGGGAAAGCTGTGTCATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

128

Amino Acids

15.06

Weight (kDa)

9.05

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 54 - 100 8.2e-12 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 110
AciI CCGC 1 cut(s) 106
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 2 cut(s) 125, 274
AflIII ACRYGT 1 cut(s) 313
AgsI TTSAA 3 cut(s) 253, 304, 323
AluBI AGCT 2 cut(s) 326, 373
AluI AGCT 2 cut(s) 326, 373
Alw21I GWGCWC 1 cut(s) 34
Alw26I GTCTC 2 cut(s) 92, 107
ApoI RAATTY 1 cut(s) 338
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 2 cut(s) 154, 180
BceAI ACGGC 1 cut(s) 249
BciVI GTATCC 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 92, 107
BfuAI ACCTGC 1 cut(s) 110
BfuI GTATCC 1 cut(s) 207
BisI GCNGC 1 cut(s) 106
BlsI GCNGC 1 cut(s) 107
BmcAI AGTACT 1 cut(s) 125
Bsa29I ATCGAT 1 cut(s) 157
BsaBI GATNNNNATC 2 cut(s) 42, 252
BsaI GGTCTC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 346, 376
Bse1I ACTGG 2 cut(s) 17, 349
Bse8I GATNNNNATC 2 cut(s) 42, 252
BseCI ATCGAT 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 86
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 2 cut(s) 42, 252
BseNI ACTGG 2 cut(s) 17, 349
BshVI ATCGAT 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 34
BsmAI GTCTC 2 cut(s) 92, 107
Bso31I GGTCTC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 34
Bsp19I CCATGG 1 cut(s) 86
BspACI CCGC 1 cut(s) 106
BspDI ATCGAT 1 cut(s) 157
BspHI TCATGA 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 92
BsrI ACTGG 2 cut(s) 17, 349
BssECI CCNNGG 1 cut(s) 86
BssT1I CCWWGG 1 cut(s) 86
Bst4CI ACNGT 3 cut(s) 128, 186, 296
Bst6I CTCTTC 1 cut(s) 263
BstDSI CCRYGG 1 cut(s) 86
BstEII GGTNACC 1 cut(s) 80
BstF5I GGATG 1 cut(s) 172
BstMAI GTCTC 2 cut(s) 92, 107
BstNSI RCATGY 2 cut(s) 8, 317
BstPI GGTNACC 1 cut(s) 80
Bsu15I ATCGAT 1 cut(s) 157
BsuI GTATCC 1 cut(s) 207
BsuTUI ATCGAT 1 cut(s) 157
BtgI CCRYGG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 182, 342
BveI ACCTGC 1 cut(s) 110
CciI TCATGA 1 cut(s) 24
ClaI ATCGAT 1 cut(s) 157
Csp6I GTAC 2 cut(s) 124, 273
CspCI CAANNNNNGTGG 2 cut(s) 43, 78
CviAII CATG 5 cut(s) 5, 25, 87, 314, 380
CviJI RGCY 2 cut(s) 326, 373
CviKI_1 RGCY 2 cut(s) 326, 373
CviQI GTAC 2 cut(s) 124, 273
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 86
Eco31I GGTCTC 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 80
EcoO65I GGTNACC 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 86
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 86
FaeI CATG 5 cut(s) 8, 28, 90, 317, 383
FatI CATG 5 cut(s) 4, 24, 86, 313, 379
Fnu4HI GCNGC 1 cut(s) 106
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 106
GluI GCNGC 1 cut(s) 106
Hin1II CATG 5 cut(s) 8, 28, 90, 317, 383
HincII GTYRAC 1 cut(s) 189
HindII GTYRAC 1 cut(s) 189
HindIII AAGCTT 1 cut(s) 324
Hpy166II GTNNAC 2 cut(s) 189, 311
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 5 cut(s) 25, 35, 112, 150, 320
Hpy8I GTNNAC 2 cut(s) 189, 311
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 3 cut(s) 128, 186, 296
HpyCH4V TGCA 3 cut(s) 4, 54, 231
Hsp92II CATG 5 cut(s) 8, 28, 90, 317, 383
LpnPI CCDG 4 cut(s) 30, 115, 191, 330
MaeIII GTNAC 2 cut(s) 80, 221
MboII GAAGA 1 cut(s) 250
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 1 cut(s) 338
MnlI CCTC 2 cut(s) 32, 59
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 329
MslI CAYNNNNRTG 1 cut(s) 91
NcoI CCATGG 1 cut(s) 86
NlaIII CATG 5 cut(s) 8, 28, 90, 317, 383
NmuCI GTSAC 1 cut(s) 221
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 317
PagI TCATGA 1 cut(s) 24
PciI ACATGT 1 cut(s) 313
PkrI GCNGC 1 cut(s) 107
PscI ACATGT 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 80
RsaI GTAC 2 cut(s) 125, 274
RsaNI GTAC 2 cut(s) 124, 273
RseI CAYNNNNRTG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 1 cut(s) 106
ScaI AGTACT 1 cut(s) 125
SduI GDGCHC 1 cut(s) 34
SetI ASST 3 cut(s) 104, 328, 375
SmiMI CAYNNNNRTG 1 cut(s) 91
Sse9I AATT 1 cut(s) 338
SsiI CCGC 1 cut(s) 106
StyI CCWWGG 1 cut(s) 86
TaaI ACNGT 3 cut(s) 128, 186, 296
TaqI TCGA 2 cut(s) 111, 157
TasI AATT 1 cut(s) 338
TatI WGTACW 2 cut(s) 123, 272
TauI GCSGC 1 cut(s) 108
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 2 cut(s) 189, 349
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 3 cut(s) 26, 152, 230
TspRI CASTG 2 cut(s) 189, 349
XapI RAATTY 1 cut(s) 338
XceI RCATGY 2 cut(s) 8, 317
ZrmI AGTACT 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.