Rmu_sc0015624.1_g000001

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015624.1
OG0000226
Physical Location & Seq
Reverse (-)
1420 .. 1848
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015624.1_g000001.1.cds

Sequence Viewer

Length: 429 bp
atgcaattttatctttgtattgcatgtgttaaattatctcctactgctaggcaccggtacgacgagcatcctctcaagctcgcttatgctagcattgaacacgagctaggtgaacattattgtgaaatatgtgtaggaacacgagatccgacacatttgttctaccagtgcgatgattgtgagtttgatcgtcatcctcattgcattctagggagatatccacgagttaatttagggagtgcctacaagcactacgctcatgtcccaccccttgtcatccttgttagtaagtcaaggagctccattccgtttgataagagagacaacatccgtccttgtgaggagtgcggtaaagattacataggattgttctttgaatgtagagagtacaatacccaccgtgaaggatgttgccggattatagattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

142

Amino Acids

16.66

Weight (kDa)

6.54

Isoelectric Point (pI)

57.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 51
AciI CCGC 1 cut(s) 348
AclWI GGATC 1 cut(s) 140
AfaI GTAC 2 cut(s) 59, 389
AgeI ACCGGT 1 cut(s) 54
AgsI TTSAA 2 cut(s) 98, 377
AloI GAACNNNNNNTCC 2 cut(s) 130, 162
AluBI AGCT 3 cut(s) 79, 106, 300
AluI AGCT 3 cut(s) 79, 106, 300
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 1 cut(s) 140
AsiGI ACCGGT 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 122
AsuNHI GCTAGC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 302
BauI CACGAG 3 cut(s) 101, 141, 222
Bbv12I GWGCWC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 4 cut(s) 48, 90, 107, 209
BmiI GGNNCC 1 cut(s) 53
BmsI GCATC 1 cut(s) 76
BmtI GCTAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 199
Bse8I GATNNNNATC 1 cut(s) 192
BseGI GGATG 5 cut(s) 67, 193, 276, 327, 413
BseJI GATNNNNATC 1 cut(s) 192
BseMI GCAATG 1 cut(s) 199
BseNI ACTGG 1 cut(s) 166
BseRI GAGGAG 1 cut(s) 356
BshNI GGYRCC 1 cut(s) 51
BshTI ACCGGT 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 2 cut(s) 55, 415
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 2 cut(s) 145, 187
BspACI CCGC 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 53
BspOI GCTAGC 1 cut(s) 93
BspPI GGATC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 199
BsrFI RCCGGY 1 cut(s) 54
BsrI ACTGG 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 54
BssMI GATC 2 cut(s) 145, 187
BssSI CACGAG 3 cut(s) 101, 141, 222
Bst2BI CACGAG 3 cut(s) 101, 141, 222
Bst4CI ACNGT 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 81, 91
BstF5I GGATG 5 cut(s) 67, 193, 276, 327, 413
BstKTI GATC 2 cut(s) 148, 190
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 2 cut(s) 145, 187
BstNSI RCATGY 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 5 cut(s) 67, 193, 276, 327, 413
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 81, 91
Cfr10I RCCGGY 1 cut(s) 54
Csp6I GTAC 2 cut(s) 58, 388
CspAI ACCGGT 1 cut(s) 54
CviAII CATG 2 cut(s) 24, 260
CviJI RGCY 3 cut(s) 79, 106, 300
CviKI_1 RGCY 3 cut(s) 79, 106, 300
CviQI GTAC 2 cut(s) 58, 388
DpnI GATC 2 cut(s) 147, 189
DpnII GATC 2 cut(s) 145, 187
Ecl136II GAGCTC 1 cut(s) 300
Eco24I GRGCYC 1 cut(s) 302
Eco32I GATATC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 300
EcoRV GATATC 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 302
FaeI CATG 2 cut(s) 27, 263
FaiI YATR 6 cut(s) 25, 87, 130, 261, 362, 422
FaqI GGGAC 1 cut(s) 248
FatI CATG 2 cut(s) 23, 259
FokI GGATG 5 cut(s) 54, 180, 263, 314, 420
FriOI GRGCYC 1 cut(s) 302
FspBI CTAG 4 cut(s) 48, 90, 107, 209
HapII CCGG 2 cut(s) 55, 415
Hin1II CATG 2 cut(s) 27, 263
HpaII CCGG 2 cut(s) 55, 415
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 1 cut(s) 150
Hpy8I GTNNAC 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 3 cut(s) 4, 23, 204
Hsp92II CATG 2 cut(s) 27, 263
Kzo9I GATC 2 cut(s) 145, 187
LmnI GCTCC 2 cut(s) 297, 305
LpnPI CCDG 2 cut(s) 68, 179
LweI GCATC 1 cut(s) 76
MaeI CTAG 4 cut(s) 48, 90, 107, 209
MalI GATC 2 cut(s) 147, 189
MboI GATC 2 cut(s) 145, 187
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 3 cut(s) 5, 32, 229
MmeI TCCRAC 1 cut(s) 173
MnlI CCTC 3 cut(s) 81, 207, 334
MseI TTAA 2 cut(s) 30, 228
MslI CAYNNNNRTG 1 cut(s) 120
MspI CCGG 2 cut(s) 55, 415
Mva1269I GAATGC 1 cut(s) 204
NdeII GATC 2 cut(s) 145, 187
NheI GCTAGC 1 cut(s) 89
NlaIII CATG 2 cut(s) 27, 263
NlaIV GGNNCC 1 cut(s) 53
NspI RCATGY 1 cut(s) 27
PctI GAATGC 1 cut(s) 204
PinAI ACCGGT 1 cut(s) 54
Psp124BI GAGCTC 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 53
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 2 cut(s) 59, 389
RsaNI GTAC 2 cut(s) 58, 388
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 30, 228
Sau3AI GATC 2 cut(s) 145, 187
SduI GDGCHC 1 cut(s) 302
SetI ASST 4 cut(s) 81, 108, 112, 302
SfaNI GCATC 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 120
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 5, 32, 229
SsiI CCGC 1 cut(s) 348
SspMI CTAG 4 cut(s) 48, 90, 107, 209
SstI GAGCTC 1 cut(s) 302
TaaI ACNGT 1 cut(s) 401
TasI AATT 3 cut(s) 5, 32, 229
TatI WGTACW 1 cut(s) 387
Tru1I TTAA 2 cut(s) 30, 228
Tru9I TTAA 2 cut(s) 30, 228
TscAI CASTG 1 cut(s) 173
TspGWI ACGGA 2 cut(s) 297, 320
TspRI CASTG 1 cut(s) 173
XceI RCATGY 1 cut(s) 27
XspI CTAG 4 cut(s) 48, 90, 107, 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.