AT1G60787

Cysteine Histidine-rich C1 domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000226
Physical Location & Seq
Reverse (-)
22378102 .. 22379981
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G60787.3

Sequence Viewer

Length: 609 bp
ATGGAGCTGCTGAGGGATTTTAAGTGCATTGCCTGCAAACTGGATATTAAATCATATGGCCATTTTTGCTTCATTTGTGAAGTCGCCTTCCATATTAAGTGCATCAAAGATGTTGATGGACTAGGTAAGAACAGCTTTCACAAGCATACTCTCTATAACTTTTGGATTGAGGACTTGAAGGTACTGACTCATCAAGCATGTAGTGTGTGTGGTAGACCTTGTGGTGTGTCGCTCTATGGTTGTATTGATTGTAACTTCAGAGCCCATGTAGAATGCCTTGGGTTTCCAGGCATTGTGAAGTCCCAACTGCATCAACATACTGTCCTAGAAGAGGAAAATTATGATGCGGGAAAGTGTGCGCTCTGTAGGTCAGGATGCTTGGGTAAGAGATATTCTTGTAAACAGTGCAAGGAAGTGTTTCATAAGGAATGCATAATGTCCAAGGATGCCCGCGAAGCTGCAACAGAAGAAGAACAGCTTATTGGAGACATCTATTTTATGTACATTGAGCGCTTTCTCCTAATGTTCAAAGAAGAAGAAGAAAAGGAAGAAAAAAAGAAAAGCGGCAAATTCAAGATGAGGAGATTACAGAATTATCGATGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

202

Amino Acids

23.66

Weight (kDa)

8.25

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 214
AccII CGCG 1 cut(s) 453
AciI CCGC 3 cut(s) 347, 451, 564
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 569
AcuI CTGAAG 1 cut(s) 241
AfaI GTAC 2 cut(s) 183, 503
AfeI AGCGCT 1 cut(s) 512
AfiI CCNNNNNNNGG 1 cut(s) 331
AgsI TTSAA 3 cut(s) 178, 529, 574
AjnI CCWGG 1 cut(s) 286
AjuI GAANNNNNNNTTGG 2 cut(s) 465, 497
AluBI AGCT 4 cut(s) 7, 135, 458, 478
AluI AGCT 4 cut(s) 7, 135, 458, 478
Alw26I GTCTC 1 cut(s) 480
Aor51HI AGCGCT 1 cut(s) 512
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 2 cut(s) 7, 458
ApoI RAATTY 1 cut(s) 569
Asp700I GAANNNNTTC 1 cut(s) 417
AspLEI GCGC 2 cut(s) 361, 513
BalI TGGCCA 1 cut(s) 60
BanII GRGCYC 1 cut(s) 265
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 1 cut(s) 445
BccI CCATC 2 cut(s) 110, 594
BciT130I CCWGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 480
BfaI CTAG 2 cut(s) 122, 326
BfmI CTRYAG 1 cut(s) 364
BfoI RGCGCY 1 cut(s) 514
BisI GCNGC 3 cut(s) 8, 459, 565
BlsI GCNGC 3 cut(s) 9, 460, 566
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BmsI GCATC 5 cut(s) 111, 319, 334, 365, 436
Bpu10I CCTNAGC 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 598
BsaJI CCNNGG 2 cut(s) 277, 441
Bsc4I CCNNNNNNNGG 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 288
BseCI ATCGAT 1 cut(s) 598
BseDI CCNNGG 2 cut(s) 277, 441
BseGI GGATG 2 cut(s) 380, 451
BseLI CCNNNNNNNGG 1 cut(s) 331
BseMI GCAATG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 1 cut(s) 595
BseXI GCAGC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 453
BshFI GGCC 1 cut(s) 60
BshVI ATCGAT 1 cut(s) 598
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 1 cut(s) 331
BsmAI GTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 2 cut(s) 278, 434
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 265
Bsp1407I TGTACA 1 cut(s) 501
BspACI CCGC 3 cut(s) 347, 451, 564
BspANI GGCC 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 598
BspFNI CGCG 1 cut(s) 453
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 501
BsrI ACTGG 1 cut(s) 45
BssECI CCNNGG 2 cut(s) 277, 441
BssT1I CCWWGG 2 cut(s) 277, 441
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 322, 405
Bst6I CTCTTC 1 cut(s) 324
BstAPI GCANNNNNTGC 1 cut(s) 33
BstAUI TGTACA 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 34, 451
BstDEI CTNAG 1 cut(s) 11
BstENI CCTNNNNNAGG 1 cut(s) 329
BstF5I GGATG 2 cut(s) 380, 451
BstFNI CGCG 1 cut(s) 453
BstH2I RGCGCY 1 cut(s) 514
BstHHI GCGC 2 cut(s) 361, 513
BstMAI GTCTC 1 cut(s) 480
BstMWI GCNNNNNNNGC 3 cut(s) 33, 66, 455
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 286
BstSFI CTRYAG 1 cut(s) 364
BstUI CGCG 1 cut(s) 453
BstV1I GCAGC 1 cut(s) 445
Bsu15I ATCGAT 1 cut(s) 598
BsuRI GGCC 1 cut(s) 60
BsuTUI ATCGAT 1 cut(s) 598
BtsCI GGATG 2 cut(s) 380, 451
BtsIMutI CAGTG 1 cut(s) 410
Cac8I GCNNGC 2 cut(s) 34, 451
CfoI GCGC 2 cut(s) 361, 513
ClaI ATCGAT 1 cut(s) 598
Csp6I GTAC 2 cut(s) 182, 502
CviAII CATG 2 cut(s) 198, 266
CviJI RGCY 6 cut(s) 7, 60, 135, 263, 458, 478
CviKI_1 RGCY 6 cut(s) 7, 60, 135, 263, 458, 478
CviQI GTAC 2 cut(s) 182, 502
DdeI CTNAG 1 cut(s) 11
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 324
EarI CTCTTC 1 cut(s) 324
Eco130I CCWWGG 2 cut(s) 277, 441
Eco24I GRGCYC 1 cut(s) 265
Eco47III AGCGCT 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 241
EcoNI CCTNNNNNAGG 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 2 cut(s) 277, 441
EcoT22I ATGCAT 1 cut(s) 434
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 2 cut(s) 277, 441
FaeI CATG 2 cut(s) 201, 269
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 462, 494
FaqI GGGAC 1 cut(s) 286
FatI CATG 2 cut(s) 197, 265
FauI CCCGC 2 cut(s) 340, 458
FauNDI CATATG 1 cut(s) 55
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 3 cut(s) 8, 459, 565
FokI GGATG 2 cut(s) 387, 458
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 8, 459, 565
FspBI CTAG 2 cut(s) 122, 326
GlaI GCGC 2 cut(s) 360, 512
GluI GCNGC 3 cut(s) 8, 459, 565
HaeII RGCGCY 1 cut(s) 514
HaeIII GGCC 1 cut(s) 60
HhaI GCGC 2 cut(s) 361, 513
Hin1II CATG 2 cut(s) 201, 269
Hin6I GCGC 2 cut(s) 359, 511
HinP1I GCGC 2 cut(s) 359, 511
HinfI GANTC 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 215, 401
Hpy188I TCNGA 1 cut(s) 260
Hpy188III TCNNGA 2 cut(s) 372, 574
Hpy8I GTNNAC 2 cut(s) 215, 401
HpyAV CCTTC 2 cut(s) 97, 172
HpyCH4III ACNGT 2 cut(s) 322, 405
HpyCH4V TGCA 7 cut(s) 27, 36, 102, 310, 408, 432, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 33, 66, 455
HpyF3I CTNAG 1 cut(s) 11
Hsp92II CATG 2 cut(s) 201, 269
HspAI GCGC 2 cut(s) 359, 511
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 26, 46, 273, 300, 357
Lsp1109I GCAGC 1 cut(s) 445
LweI GCATC 5 cut(s) 111, 319, 334, 365, 436
MaeI CTAG 2 cut(s) 122, 326
MaeIII GTNAC 1 cut(s) 251
MboII GAAGA 7 cut(s) 341, 479, 482, 545, 548, 551, 560
MhlI GDGCHC 1 cut(s) 265
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 3 cut(s) 337, 569, 592
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 4 cut(s) 6, 163, 325, 573
Mox20I TGGCCA 1 cut(s) 60
Mph1103I ATGCAT 1 cut(s) 434
MroXI GAANNNNTTC 1 cut(s) 417
MscI TGGCCA 1 cut(s) 60
MseI TTAA 3 cut(s) 21, 48, 96
Msp20I TGGCCA 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 288
Mva1269I GAATGC 2 cut(s) 278, 434
MvaI CCWGG 1 cut(s) 288
MvnI CGCG 1 cut(s) 453
MwoI GCNNNNNNNGC 3 cut(s) 33, 66, 455
NdeI CATATG 1 cut(s) 55
NlaIII CATG 2 cut(s) 201, 269
NsiI ATGCAT 1 cut(s) 434
NspI RCATGY 1 cut(s) 201
PctI GAATGC 2 cut(s) 278, 434
PdmI GAANNNNTTC 1 cut(s) 417
PkrI GCNGC 3 cut(s) 9, 460, 566
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
RsaI GTAC 2 cut(s) 183, 503
RsaNI GTAC 2 cut(s) 182, 502
SaqAI TTAA 3 cut(s) 21, 48, 96
SatI GCNGC 3 cut(s) 8, 459, 565
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 288
SduI GDGCHC 1 cut(s) 265
SetI ASST 8 cut(s) 9, 127, 137, 183, 220, 371, 460, 480
SfaNI GCATC 5 cut(s) 111, 319, 334, 365, 436
SfcI CTRYAG 1 cut(s) 364
Sse9I AATT 3 cut(s) 337, 569, 592
SsiI CCGC 3 cut(s) 347, 451, 564
SspMI CTAG 2 cut(s) 122, 326
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 2 cut(s) 277, 441
TaaI ACNGT 2 cut(s) 322, 405
TaqI TCGA 1 cut(s) 598
TasI AATT 3 cut(s) 337, 569, 592
TatI WGTACW 1 cut(s) 501
TauI GCSGC 1 cut(s) 567
Tru1I TTAA 3 cut(s) 21, 48, 96
Tru9I TTAA 3 cut(s) 21, 48, 96
TscAI CASTG 1 cut(s) 410
TseI GCWGC 2 cut(s) 7, 458
TspDTI ATGAA 2 cut(s) 61, 410
TspRI CASTG 1 cut(s) 410
XagI CCTNNNNNAGG 1 cut(s) 329
XapI RAATTY 1 cut(s) 569
XceI RCATGY 1 cut(s) 201
XmiI GTMKAC 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 417
XspI CTAG 2 cut(s) 122, 326
Zsp2I ATGCAT 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.