FvH4_6g47450

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000226
Physical Location & Seq
Forward (+)
35946825 .. 35949627
2803 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g47450.t1

Sequence Viewer

Length: 2109 bp
ATGGATCAGCTTCAACATTTCAGTCACGACCATCCATTGATGTTCAAGGAAGAGGCGCAGAAGGATAAAGATGGTACAACAGTAGTTTGCCGTGCGTGTGGGGACCCGGTGCTTGGTCCAAGCTACAGTTGCAGCCAGTGTTCCGATTTATTCATTCTCCACAAGTCATGTGCGGAGCTTCCCTCGGAGTTTCATCACCCGATGCATACCCAACATTCACTTGTTCTAAACAAAGGCAGAGGACGAGGATACCAGTGTGATGCATGTGACCAAGATTGCAGCCACAAGTTCACTTATAGTTGCTTCCAGTGTGACTTCAACCTCGACTCAAAATGTGCTTTCAATTGGACCGGTTTTAAACATTTCAGTCACGAGCATCCGTTATTGTCCCAGAGAAAGCCAAAGAAGAAGTACTTTGGTCTGCTGTTCTGCGATGGCTGCCAAGACCCAATACTAACTGGTCCAAGTTACACATGCATCAATACCTTCCGTCGTCGCAAATGTGGCTTCAATCTCCATAAAAAATGTGCGGAGCTGCCCCATGAAATTGAGCACCCGATGCACCGTCAACACCCGCTTTTTCTCCACAACATTCTTCCGGATGTCAAGCGGGTACGTCGCCTTTGTAATGTTTGCAACGAACCTGGCAGATTCCTCTACTGCTGTTCCATATGTGACTTCAACCTTCACCCCAAGTGTGGCTCACATTGGCAAACTATTCTTGCTAATGACTCTCACGAGCATCAGTTCACAGTCCTCTGGAAGAAAATGTCTGACTTCCACGTTAATTGTGAAGTTTGTGGTGAGTACTGGACTGCCACGGTTTACTACATGTGTAGCATTTGCCAGCTCTTGGTCCATAAGGAATGTGCTTCATTACCACGCAGCATAAAAAAACCTGACCACCAACACCAACTGGAGCTGACCTGGTTCCTTGACAACTTCTACCCCAACAACCTGTCATGCAATGTGTGCTCTTTAAGCATTGATAAATGTCGCGCTGCTTATTGTTGTGGTGAATGTAACAGTTATGTTGCCCATGTCGCATGTACGACAGCTGAGTACTCTCAAGAAGATAGCTCTCGAGAAGATAGGTTTTCGGACATTGTCCTGAATGAAATTGAGTCTAAATCGTCTGATGATGCTCTAGAGATCACACACTTCATTCACCCACATCCATTAGTCGCTAATGATCCTTGTGAGGAAGTTAAAGATGAGCACAGACTAATTACCTGTGAGGGATGCATCCGCCCCATAAATGCCACCAAAGAATCCTTTTACAGCTGCACCAAACAAGAAGATGAGTTGTGTAGTTTCTTTCTCCATAAGGTATGTGCTCAATTACCTAAAAAGATGCTTCTCCCTCTACTTCACCAACACCAGGTCACGCTCCTCTCAAAGGCACCTTCTATTGGTGGTGTGTTCCAGTGTTTTATGTGTAATGCTTTTAACCAAGGCTTCACATATGCATGTGAGAAATGTGCCTCATCTGAAGGTGAAACTGTTTTCTACCTCGACCTTCAGTGCATTGCTTACTGGGAAAACAAGGCTCTTAAACATGACTCTCATGTTCACCGCCTGCTCCTCAACACAGAATGGGAGGACGTCCATTGCAGCAGTTGTGGGTGTGATATATTTTTCTGCTTTAGTTGTAAGAGATGTGAATATCATCTTTGTATTCCATGTGTTAGAGTACCTCTTACTGGTAGGCACCGATACGATGATCATCCTCTCAAGCTCACATATGCTAGTGTCCCCGATGAGCTGGGTTACTATTGTCAAATATGCGAAGGAACTCGAGATCCAGCACATTGGTTCTACCGCTGCAATGATTGTGACTTTGATTGCCATGCTCACTGCATTGTGGGGAGGTATCCACAGGTCAAGTTAGGGAGCACTTGCAAGCACGAAGCTCATGCTCAACACCTCGTCACCCTTGTTGATAAGTCAAGGAGCCCTATTCGGTTTGATAAGAGAGAGAACATTCTTCCTTGCCAGAAGTGTAGACAACCCTGTGTAGGATTGGTGTTTGAATGTAGAGAGTGCAATATAAATATCCACCGTGAAGGATTCTGTCAGGTAACAGACTTGGAGAGTTCTGCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

703

Amino Acids

80.95

Weight (kDa)

6.46

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 7 - 58 1.1e-09 C1 domain
C1_2 PF03107 68 - 113 5.3e-08 C1 domain
C1_2 PF03107 187 - 233 1.8e-08 C1 domain
C1_2 PF03107 245 - 291 1.6e-06 C1 domain
C1_2 PF03107 301 - 350 4.2e-06 C1 domain
C1_2 PF03107 389 - 446 8.8e-06 C1 domain
C1_2 PF03107 572 - 621 2.8e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1608
AccB1I GGYRCC 2 cut(s) 1402, 1710
AccB7I CCANNNNNTGG 1 cut(s) 853
AccI GTMKAC 1 cut(s) 2005
AccII CGCG 1 cut(s) 999
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 7 cut(s) 173, 530, 575, 610, 1249, 1576, 1822
AclWI GGATC 3 cut(s) 12, 1187, 1796
AcuI CTGAAG 2 cut(s) 1505, 1512
AcyI GRCGYC 1 cut(s) 1605
AfaI GTAC 7 cut(s) 76, 413, 615, 809, 1051, 1064, 1695
AfiI CCNNNNNNNGG 8 cut(s) 113, 698, 853, 1381, 1399, 1412, 1703, 2018
AflIII ACRYGT 1 cut(s) 831
AgeI ACCGGT 1 cut(s) 350
AgsI TTSAA 7 cut(s) 14, 46, 319, 343, 511, 682, 2033
AjnI CCWGG 3 cut(s) 643, 926, 1380
AloI GAACNNNNNNTCC 2 cut(s) 1786, 1818
Alw21I GWGCWC 5 cut(s) 555, 977, 1221, 1339, 1898
AlwI GGATC 3 cut(s) 12, 1187, 1796
Ama87I CYCGRG 2 cut(s) 1083, 1797
Aor13HI TCCGGA 1 cut(s) 598
ApeKI GCWGC 9 cut(s) 132, 279, 438, 535, 885, 1001, 1284, 1614, 1824
AsiGI ACCGGT 1 cut(s) 350
AspLEI GCGC 2 cut(s) 58, 1001
AspS9I GGNCC 5 cut(s) 103, 116, 348, 461, 856
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 9 cut(s) 188, 680, 815, 1028, 1160, 1364, 1508, 1565, 1924
AvaI CYCGRG 2 cut(s) 1083, 1797
AvaII GGWCC 5 cut(s) 103, 116, 348, 461, 856
BaeI ACNNNNGTAYC 4 cut(s) 66, 99, 241, 274
BanI GGYRCC 2 cut(s) 1402, 1710
BanII GRGCYC 1 cut(s) 1958
BauI CACGAG 2 cut(s) 371, 737
Bbv12I GWGCWC 5 cut(s) 555, 977, 1221, 1339, 1898
BbvI GCAGC 9 cut(s) 144, 291, 425, 522, 897, 988, 1271, 1626, 1811
BccI CCATC 3 cut(s) 39, 65, 428
BceAI ACGGC 1 cut(s) 75
BcgI CGANNNNNNTGC 2 cut(s) 1898, 1932
BciT130I CCWGG 3 cut(s) 645, 928, 1382
BciVI GTATCC 2 cut(s) 242, 1884
BclI TGATCA 1 cut(s) 1723
BcnI CCSGG 1 cut(s) 107
BfaI CTAG 2 cut(s) 1148, 1749
BfmI CTRYAG 1 cut(s) 124
BfuI GTATCC 2 cut(s) 242, 1884
BisI GCNGC 9 cut(s) 133, 280, 439, 536, 886, 1002, 1285, 1615, 1825
BlsI GCNGC 9 cut(s) 134, 281, 440, 537, 887, 1003, 1286, 1616, 1826
BmcAI AGTACT 3 cut(s) 413, 809, 1064
Bme1390I CCNGG 4 cut(s) 107, 645, 928, 1382
Bme18I GGWCC 5 cut(s) 103, 116, 348, 461, 856
BmeT110I CYCGRG 2 cut(s) 1083, 1797
BmgT120I GGNCC 5 cut(s) 103, 116, 348, 461, 856
BmiI GGNNCC 6 cut(s) 104, 105, 932, 1404, 1712, 1955
BmrFI CCNGG 4 cut(s) 107, 645, 928, 1382
BmrI ACTGGG 1 cut(s) 1546
BmuI ACTGGG 1 cut(s) 1546
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 1 cut(s) 938
BpuEI CTTGAG 2 cut(s) 1053, 1718
BpuMI CCSGG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 1725
BsaHI GRCGYC 1 cut(s) 1605
BsaJI CCNNGG 3 cut(s) 183, 819, 1453
BsaWI WCCGGW 2 cut(s) 350, 598
Bsc4I CCNNNNNNNGG 8 cut(s) 113, 698, 853, 1381, 1399, 1412, 1703, 2018
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 9 cut(s) 136, 253, 307, 463, 815, 921, 1426, 1541, 1708
Bse3DI GCAATG 4 cut(s) 973, 1527, 1609, 1834
Bse8I GATNNNNATC 1 cut(s) 1725
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 3 cut(s) 645, 928, 1382
BseDI CCNNGG 3 cut(s) 183, 819, 1453
BseGI GGATG 7 cut(s) 31, 376, 607, 1174, 1245, 1247, 1726
BseJI GATNNNNATC 1 cut(s) 1725
BseLI CCNNNNNNNGG 8 cut(s) 113, 698, 853, 1381, 1399, 1412, 1703, 2018
BseMI GCAATG 4 cut(s) 973, 1527, 1609, 1834
BseMII CTCAG 1 cut(s) 1050
BseNI ACTGG 9 cut(s) 136, 253, 307, 463, 815, 921, 1426, 1541, 1708
BseRI GAGGAG 2 cut(s) 1382, 1574
BseXI GCAGC 9 cut(s) 144, 291, 425, 522, 897, 988, 1271, 1626, 1811
BseYI CCCAGC 1 cut(s) 1765
BsgI GTGCAG 1 cut(s) 1270
Bsh1236I CGCG 1 cut(s) 999
BshNI GGYRCC 2 cut(s) 1402, 1710
BshTI ACCGGT 1 cut(s) 350
BsiHKAI GWGCWC 5 cut(s) 555, 977, 1221, 1339, 1898
BsiHKCI CYCGRG 2 cut(s) 1083, 1797
BsiSI CCGG 3 cut(s) 107, 351, 599
BslFI GGGAC 3 cut(s) 116, 373, 1739
BslI CCNNNNNNNGG 8 cut(s) 113, 698, 853, 1381, 1399, 1412, 1703, 2018
BsmFI GGGAC 3 cut(s) 116, 373, 1739
BsoBI CYCGRG 2 cut(s) 1083, 1797
Bsp1286I GDGCHC 6 cut(s) 555, 977, 1221, 1339, 1898, 1958
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 5 cut(s) 4, 1152, 1192, 1723, 1801
BspACI CCGC 7 cut(s) 173, 530, 575, 610, 1249, 1576, 1822
BspCNI CTCAG 1 cut(s) 1051
BspEI TCCGGA 1 cut(s) 598
BspFNI CGCG 1 cut(s) 999
BspLI GGNNCC 6 cut(s) 104, 105, 932, 1404, 1712, 1955
BspPI GGATC 3 cut(s) 12, 1187, 1796
BspT107I GGYRCC 2 cut(s) 1402, 1710
BsrDI GCAATG 4 cut(s) 973, 1527, 1609, 1834
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 9 cut(s) 136, 253, 307, 463, 815, 921, 1426, 1541, 1708
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 3 cut(s) 183, 819, 1453
BssMI GATC 5 cut(s) 4, 1152, 1192, 1723, 1801
BssNI GRCGYC 1 cut(s) 1605
BssSI CACGAG 2 cut(s) 371, 737
BssT1I CCWWGG 1 cut(s) 1453
Bst2BI CACGAG 2 cut(s) 371, 737
Bst2UI CCWGG 3 cut(s) 645, 928, 1382
Bst4CI ACNGT 8 cut(s) 82, 128, 566, 754, 823, 1028, 1504, 2063
Bst6I CTCTTC 1 cut(s) 45
BstACI GRCGYC 1 cut(s) 1605
BstAPI GCANNNNNTGC 2 cut(s) 559, 972
BstC8I GCNNGC 3 cut(s) 848, 1580, 1904
BstDEI CTNAG 1 cut(s) 1059
BstDSI CCRYGG 1 cut(s) 819
BstENI CCTNNNNNAGG 1 cut(s) 1397
BstF5I GGATG 7 cut(s) 31, 376, 607, 1174, 1245, 1247, 1726
BstFNI CGCG 1 cut(s) 999
BstHHI GCGC 2 cut(s) 58, 1001
BstKTI GATC 5 cut(s) 7, 1155, 1195, 1726, 1804
BstMBI GATC 5 cut(s) 4, 1152, 1192, 1723, 1801
BstMWI GCNNNNNNNGC 7 cut(s) 129, 438, 504, 559, 972, 981, 1043
BstNI CCWGG 3 cut(s) 645, 928, 1382
BstNSI RCATGY 5 cut(s) 267, 477, 835, 1050, 1473
BstSCI CCNGG 4 cut(s) 105, 643, 926, 1380
BstSFI CTRYAG 1 cut(s) 124
BstUI CGCG 1 cut(s) 999
BstV1I GCAGC 9 cut(s) 144, 291, 425, 522, 897, 988, 1271, 1626, 1811
BstX2I RGATCY 1 cut(s) 1801
BstXI CCANNNNNNTGG 1 cut(s) 1812
BstYI RGATCY 1 cut(s) 1801
BsuI GTATCC 2 cut(s) 242, 1884
BtgI CCRYGG 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 7 cut(s) 31, 376, 607, 1174, 1245, 1247, 1726
BtsI GCAGTG 1 cut(s) 1855
BtsIMutI CAGTG 6 cut(s) 143, 260, 314, 1433, 1529, 1855
Cac8I GCNNGC 3 cut(s) 848, 1580, 1904
CfoI GCGC 2 cut(s) 58, 1001
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 5 cut(s) 103, 116, 348, 461, 856
CsiI ACCWGGT 2 cut(s) 926, 1380
Csp6I GTAC 7 cut(s) 75, 412, 614, 808, 1050, 1063, 1694
CspAI ACCGGT 1 cut(s) 350
CspCI CAANNNNNGTGG 2 cut(s) 770, 805
CviQI GTAC 7 cut(s) 75, 412, 614, 808, 1050, 1063, 1694
DdeI CTNAG 1 cut(s) 1059
DpnI GATC 5 cut(s) 6, 1154, 1194, 1725, 1803
DpnII GATC 5 cut(s) 4, 1152, 1192, 1723, 1801
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
EciI GGCGGA 1 cut(s) 1238
Eco130I CCWWGG 1 cut(s) 1453
Eco24I GRGCYC 1 cut(s) 1958
Eco47I GGWCC 5 cut(s) 103, 116, 348, 461, 856
Eco57I CTGAAG 2 cut(s) 1505, 1512
Eco88I CYCGRG 2 cut(s) 1083, 1797
EcoNI CCTNNNNNAGG 1 cut(s) 1397
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 3 cut(s) 643, 926, 1380
EcoT14I CCWWGG 1 cut(s) 1453
EcoT22I ATGCAT 5 cut(s) 207, 265, 479, 1247, 1471
EcoT38I GRGCYC 1 cut(s) 1958
ErhI CCWWGG 1 cut(s) 1453
FalI AAGNNNNNCTT 2 cut(s) 398, 430
FaqI GGGAC 3 cut(s) 116, 373, 1739
FauI CCCGC 2 cut(s) 582, 603
FauNDI CATATG 3 cut(s) 671, 1465, 1744
FbaI TGATCA 1 cut(s) 1723
FblI GTMKAC 1 cut(s) 2005
Fnu4HI GCNGC 9 cut(s) 133, 280, 439, 536, 886, 1002, 1285, 1615, 1825
FokI GGATG 7 cut(s) 18, 363, 614, 1161, 1232, 1254, 1713
FriOI GRGCYC 1 cut(s) 1958
Fsp4HI GCNGC 9 cut(s) 133, 280, 439, 536, 886, 1002, 1285, 1615, 1825
FspBI CTAG 2 cut(s) 1148, 1749
GlaI GCGC 2 cut(s) 57, 1000
GluI GCNGC 9 cut(s) 133, 280, 439, 536, 886, 1002, 1285, 1615, 1825
GsaI CCCAGC 1 cut(s) 1769
GsuI CTGGAG 1 cut(s) 938
HapII CCGG 3 cut(s) 107, 351, 599
HhaI GCGC 2 cut(s) 58, 1001
Hin1I GRCGYC 1 cut(s) 1605
Hin6I GCGC 2 cut(s) 56, 999
HinP1I GCGC 2 cut(s) 56, 999
HincII GTYRAC 1 cut(s) 569
HindII GTYRAC 1 cut(s) 569
HinfI GANTC 7 cut(s) 326, 651, 731, 1124, 1271, 1562, 2070
HpaII CCGG 3 cut(s) 107, 351, 599
HphI GGTGA 9 cut(s) 188, 680, 815, 1028, 1160, 1364, 1508, 1565, 1924
Hpy166II GTNNAC 6 cut(s) 291, 569, 750, 826, 1573, 2006
Hpy188I TCNGA 6 cut(s) 145, 187, 775, 1102, 1138, 1492
Hpy8I GTNNAC 6 cut(s) 291, 569, 750, 826, 1573, 2006
Hpy99I CGWCG 3 cut(s) 495, 498, 621
HpyAV CCTTC 8 cut(s) 55, 496, 695, 1416, 1487, 1529, 1784, 2060
HpyCH4III ACNGT 8 cut(s) 82, 128, 566, 754, 823, 1028, 1504, 2063
HpyCH4IV ACGT 3 cut(s) 616, 783, 1605
HpyF10VI GCNNNNNNNGC 7 cut(s) 129, 438, 504, 559, 972, 981, 1043
HpyF3I CTNAG 1 cut(s) 1059
HpySE526I ACGT 3 cut(s) 616, 783, 1605
Hsp92I GRCGYC 1 cut(s) 1605
HspAI GCGC 2 cut(s) 56, 999
KflI GGGWCCC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 1723
Kzo9I GATC 5 cut(s) 4, 1152, 1192, 1723, 1801
LmnI GCTCC 7 cut(s) 175, 532, 919, 1395, 1587, 1893, 1953
Lsp1109I GCAGC 9 cut(s) 144, 291, 425, 522, 897, 988, 1271, 1626, 1811
MabI ACCWGGT 2 cut(s) 926, 1380
MaeI CTAG 2 cut(s) 1148, 1749
MaeII ACGT 3 cut(s) 616, 783, 1605
MalI GATC 5 cut(s) 6, 1154, 1194, 1725, 1803
MboI GATC 5 cut(s) 4, 1152, 1192, 1723, 1801
MboII GAAGA 8 cut(s) 62, 418, 587, 775, 1085, 1100, 1310, 1979
MfeI CAATTG 1 cut(s) 343
MflI RGATCY 1 cut(s) 1801
MhlI GDGCHC 6 cut(s) 555, 977, 1221, 1339, 1898, 1958
MluCI AATT 6 cut(s) 343, 546, 787, 1119, 1227, 1340
MlyI GAGTC 4 cut(s) 320, 725, 1133, 1556
Mph1103I ATGCAT 5 cut(s) 207, 265, 479, 1247, 1471
MroI TCCGGA 1 cut(s) 598
MseI TTAA 6 cut(s) 357, 786, 980, 1209, 1449, 1554
MslI CAYNNNNRTG 1 cut(s) 1468
MspA1I CMGCKG 3 cut(s) 1058, 1284, 1824
MspI CCGG 3 cut(s) 107, 351, 599
MspR9I CCNGG 4 cut(s) 107, 645, 928, 1382
MunI CAATTG 1 cut(s) 343
MvaI CCWGG 3 cut(s) 645, 928, 1382
MvnI CGCG 1 cut(s) 999
MwoI GCNNNNNNNGC 7 cut(s) 129, 438, 504, 559, 972, 981, 1043
NciI CCSGG 1 cut(s) 107
NdeI CATATG 3 cut(s) 671, 1465, 1744
NdeII GATC 5 cut(s) 4, 1152, 1192, 1723, 1801
NlaIV GGNNCC 6 cut(s) 104, 105, 932, 1404, 1712, 1955
NmuCI GTSAC 8 cut(s) 23, 266, 311, 368, 674, 1384, 1835, 1930
NsiI ATGCAT 5 cut(s) 207, 265, 479, 1247, 1471
NspI RCATGY 5 cut(s) 267, 477, 835, 1050, 1473
PaeR7I CTCGAG 2 cut(s) 1083, 1797
PciI ACATGT 1 cut(s) 831
PfeI GAWTC 3 cut(s) 651, 1271, 2070
PflFI GACNNNGTC 1 cut(s) 1106
PflMI CCANNNNNTGG 1 cut(s) 853
PinAI ACCGGT 1 cut(s) 350
PkrI GCNGC 9 cut(s) 134, 281, 440, 537, 887, 1003, 1286, 1616, 1826
PleI GAGTC 4 cut(s) 320, 725, 1132, 1556
PpsI GAGTC 4 cut(s) 320, 725, 1132, 1556
PpuMI RGGWCCY 1 cut(s) 103
PscI ACATGT 1 cut(s) 831
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 3 cut(s) 643, 926, 1380
PspFI CCCAGC 1 cut(s) 1765
PspGI CCWGG 3 cut(s) 643, 926, 1380
PspN4I GGNNCC 6 cut(s) 104, 105, 932, 1404, 1712, 1955
PspPI GGNCC 5 cut(s) 103, 116, 348, 461, 856
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 1 cut(s) 1801
PsyI GACNNNGTC 1 cut(s) 1106
PvuII CAGCTG 2 cut(s) 1058, 1284
RsaI GTAC 7 cut(s) 76, 413, 615, 809, 1051, 1064, 1695
RsaNI GTAC 7 cut(s) 75, 412, 614, 808, 1050, 1063, 1694
RseI CAYNNNNRTG 1 cut(s) 1468
SaqAI TTAA 6 cut(s) 357, 786, 980, 1209, 1449, 1554
SatI GCNGC 9 cut(s) 133, 280, 439, 536, 886, 1002, 1285, 1615, 1825
Sau3AI GATC 5 cut(s) 4, 1152, 1192, 1723, 1801
Sau96I GGNCC 5 cut(s) 103, 116, 348, 461, 856
ScaI AGTACT 3 cut(s) 413, 809, 1064
SchI GAGTC 4 cut(s) 320, 725, 1133, 1556
ScrFI CCNGG 4 cut(s) 107, 645, 928, 1382
SduI GDGCHC 6 cut(s) 555, 977, 1221, 1339, 1898, 1958
SexAI ACCWGGT 2 cut(s) 926, 1380
SfcI CTRYAG 1 cut(s) 124
Sfr274I CTCGAG 2 cut(s) 1083, 1797
SinI GGWCC 5 cut(s) 103, 116, 348, 461, 856
SlaI CTCGAG 2 cut(s) 1083, 1797
SmiMI CAYNNNNRTG 1 cut(s) 1468
SmlI CTYRAG 4 cut(s) 1068, 1083, 1733, 1797
SmoI CTYRAG 4 cut(s) 1068, 1083, 1733, 1797
Sse9I AATT 6 cut(s) 343, 546, 787, 1119, 1227, 1340
SsiI CCGC 7 cut(s) 173, 530, 575, 610, 1249, 1576, 1822
SspMI CTAG 2 cut(s) 1148, 1749
StyD4I CCNGG 4 cut(s) 105, 643, 926, 1380
StyI CCWWGG 1 cut(s) 1453
TaaI ACNGT 8 cut(s) 82, 128, 566, 754, 823, 1028, 1504, 2063
TaiI ACGT 3 cut(s) 619, 786, 1608
TaqI TCGA 4 cut(s) 324, 1084, 1515, 1798
TasI AATT 6 cut(s) 343, 546, 787, 1119, 1227, 1340
TatI WGTACW 3 cut(s) 411, 807, 1062
TfiI GAWTC 3 cut(s) 651, 1271, 2070
Tru1I TTAA 6 cut(s) 357, 786, 980, 1209, 1449, 1554
Tru9I TTAA 6 cut(s) 357, 786, 980, 1209, 1449, 1554
TscAI CASTG 6 cut(s) 143, 260, 314, 1433, 1529, 1862
TseFI GTSAC 8 cut(s) 23, 266, 311, 368, 674, 1384, 1835, 1930
TseI GCWGC 9 cut(s) 132, 279, 438, 535, 885, 1001, 1284, 1614, 1824
Tsp45I GTSAC 8 cut(s) 23, 266, 311, 368, 674, 1384, 1835, 1930
TspDTI ATGAA 6 cut(s) 142, 182, 558, 864, 1131, 1153
TspGWI ACGGA 2 cut(s) 369, 479
TspRI CASTG 6 cut(s) 143, 260, 314, 1433, 1529, 1862
Tth111I GACNNNGTC 1 cut(s) 1106
Van91I CCANNNNNTGG 1 cut(s) 853
VpaK11BI GGWCC 5 cut(s) 103, 116, 348, 461, 856
XagI CCTNNNNNAGG 1 cut(s) 1397
XbaI TCTAGA 1 cut(s) 1147
XceI RCATGY 5 cut(s) 267, 477, 835, 1050, 1473
XhoI CTCGAG 2 cut(s) 1083, 1797
XmiI GTMKAC 1 cut(s) 2005
XspI CTAG 2 cut(s) 1148, 1749
ZraI GACGTC 1 cut(s) 1606
ZrmI AGTACT 3 cut(s) 413, 809, 1064
Zsp2I ATGCAT 5 cut(s) 207, 265, 479, 1247, 1471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.