Rh3CG262500

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000226
Physical Location & Seq
Reverse (-)
25619948 .. 25620598
651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG262500.1

Sequence Viewer

Length: 651 bp
ATGCCCCGTGAGATGCACCACCCGAAACACGTCAAACATCCACTTGTTCTCCTCTCACATAGAGATTATCGTTGTCATTTTTGTGACAAATTGCGTACCAACATATTCCCTTACACATGTGAGCAATGTGACTTCGAGCTTGACCTCCAATGTGCTTCCAATTTGAGTGACATAAAATGCTTGGAACACTTCAGTCATGAGCATGCACTGATGTTTATGGAAGAACCCAAAAGAAAAGGCAAGGATTCACTAGTTGTTTGTGATGGGTGCCAAGAGCAAGTGTTTGGTCCAAGCTATTGTTGCAGCCAGTTTCATTGCTACTGCACTCTCCATAAGTCATGTACGGAGCTTCCCGCAGAGTTTCATCACCCGATGCATACCCAACATCCACTTATTCTAAACAAAGATAGAGTACGAAAATACCAGTGTGATGCGTGTAACCAAGATTGCAGCGACAGGTTCACTTATAGTTGCTTCCAGTGTGACTTCAACCTTGACCAAAACTGTGCTTTCAATTGGACAGGTTTTAAACATTTCAGCCACGAGCATCCATTATTGTTGGAGAGAGAGAGCCAAAAAAGGAATACAATGGTCCGCGATTCTGCGATGGCTGCCAAGACCAAATACTTGGCCCTAGTTACACATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

216

Amino Acids

25.46

Weight (kDa)

6.81

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 9 - 52 8.9e-08 C1 domain
C1_2 PF03107 125 - 170 5.5e-10 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AccII CGCG 1 cut(s) 597
AciI CCGC 2 cut(s) 354, 595
AcuI CTGAAG 1 cut(s) 175
AfaI GTAC 3 cut(s) 97, 343, 414
AflIII ACRYGT 2 cut(s) 28, 116
AgsI TTSAA 2 cut(s) 490, 514
AhlI ACTAGT 1 cut(s) 250
AjiI CACGTC 1 cut(s) 31
AluBI AGCT 3 cut(s) 139, 294, 349
AluI AGCT 3 cut(s) 139, 294, 349
AoxI GGCC 1 cut(s) 630
ApeKI GCWGC 3 cut(s) 303, 450, 611
AspS9I GGNCC 3 cut(s) 287, 592, 631
AsuHPI GGTGA 1 cut(s) 359
AvaII GGWCC 2 cut(s) 287, 592
BanI GGYRCC 1 cut(s) 267
BauI CACGAG 1 cut(s) 542
BbvI GCAGC 3 cut(s) 315, 462, 598
BccI CCATC 2 cut(s) 257, 601
BcuI ACTAGT 1 cut(s) 250
BfaI CTAG 2 cut(s) 251, 635
BisI GCNGC 3 cut(s) 304, 451, 612
BlsI GCNGC 3 cut(s) 305, 452, 613
Bme18I GGWCC 2 cut(s) 287, 592
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 3 cut(s) 287, 592, 631
BmiI GGNNCC 1 cut(s) 269
BmsI GCATC 4 cut(s) 3, 363, 421, 556
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bse1I ACTGG 3 cut(s) 307, 424, 478
Bse3DI GCAATG 2 cut(s) 131, 313
BseGI GGATG 3 cut(s) 37, 385, 547
BseMI GCAATG 2 cut(s) 131, 313
BseNI ACTGG 3 cut(s) 307, 424, 478
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 315, 462, 598
BsgI GTGCAG 1 cut(s) 307
Bsh1236I CGCG 1 cut(s) 597
BshFI GGCC 1 cut(s) 632
BshNI GGYRCC 1 cut(s) 267
BsnI GGCC 1 cut(s) 632
BspACI CCGC 2 cut(s) 354, 595
BspANI GGCC 1 cut(s) 632
BspFNI CGCG 1 cut(s) 597
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 267
BsrDI GCAATG 2 cut(s) 131, 313
BsrI ACTGG 3 cut(s) 307, 424, 478
BssSI CACGAG 1 cut(s) 542
Bst2BI CACGAG 1 cut(s) 542
Bst4CI ACNGT 1 cut(s) 506
BstC8I GCNNGC 1 cut(s) 204
BstF5I GGATG 3 cut(s) 37, 385, 547
BstFNI CGCG 1 cut(s) 597
BstMWI GCNNNNNNNGC 2 cut(s) 300, 611
BstNSI RCATGY 3 cut(s) 120, 206, 647
BstUI CGCG 1 cut(s) 597
BstV1I GCAGC 3 cut(s) 315, 462, 598
BstXI CCANNNNNNTGG 1 cut(s) 628
BsuRI GGCC 1 cut(s) 632
BtgZI GCGATG 1 cut(s) 620
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 3 cut(s) 37, 385, 547
BtsIMutI CAGTG 3 cut(s) 206, 431, 485
Cac8I GCNNGC 1 cut(s) 204
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 3 cut(s) 287, 592, 631
Csp6I GTAC 3 cut(s) 96, 342, 413
CviAII CATG 6 cut(s) 117, 197, 203, 339, 644, 648
CviJI RGCY 8 cut(s) 139, 294, 306, 349, 540, 573, 611, 632
CviKI_1 RGCY 8 cut(s) 139, 294, 306, 349, 540, 573, 611, 632
CviQI GTAC 3 cut(s) 96, 342, 413
DraI TTTAAA 1 cut(s) 529
Eco47I GGWCC 2 cut(s) 287, 592
Eco57I CTGAAG 1 cut(s) 175
EcoT22I ATGCAT 2 cut(s) 378, 649
FaeI CATG 6 cut(s) 120, 200, 206, 342, 647, 651
FatI CATG 6 cut(s) 116, 196, 202, 338, 643, 647
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 3 cut(s) 304, 451, 612
FokI GGATG 3 cut(s) 24, 372, 534
Fsp4HI GCNGC 3 cut(s) 304, 451, 612
FspBI CTAG 2 cut(s) 251, 635
GluI GCNGC 3 cut(s) 304, 451, 612
HaeIII GGCC 1 cut(s) 632
Hin1II CATG 6 cut(s) 120, 200, 206, 342, 647, 651
HinfI GANTC 2 cut(s) 245, 599
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 462
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 462
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 7 cut(s) 16, 206, 303, 324, 376, 450, 647
HpyF10VI GCNNNNNNNGC 2 cut(s) 300, 611
HpySE526I ACGT 1 cut(s) 30
Hsp92II CATG 6 cut(s) 120, 200, 206, 342, 647, 651
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 5 cut(s) 320, 437, 442, 491, 507
Lsp1109I GCAGC 3 cut(s) 315, 462, 598
LweI GCATC 4 cut(s) 3, 363, 421, 556
MaeI CTAG 2 cut(s) 251, 635
MaeII ACGT 1 cut(s) 30
MaeIII GTNAC 6 cut(s) 83, 128, 167, 437, 482, 637
MboII GAAGA 1 cut(s) 233
MfeI CAATTG 1 cut(s) 514
MluCI AATT 3 cut(s) 89, 160, 514
MmeI TCCRAC 1 cut(s) 540
MnlI CCTC 2 cut(s) 62, 155
Mph1103I ATGCAT 2 cut(s) 378, 649
MseI TTAA 1 cut(s) 528
MslI CAYNNNNRTG 3 cut(s) 81, 201, 646
MunI CAATTG 1 cut(s) 514
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 2 cut(s) 300, 611
NlaIII CATG 6 cut(s) 120, 200, 206, 342, 647, 651
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 4 cut(s) 83, 128, 167, 482
NsiI ATGCAT 2 cut(s) 378, 649
NspI RCATGY 3 cut(s) 120, 206, 647
PaeI GCATGC 1 cut(s) 206
PagI TCATGA 1 cut(s) 196
PciI ACATGT 1 cut(s) 116
PfeI GAWTC 2 cut(s) 245, 599
PkrI GCNGC 3 cut(s) 305, 452, 613
PscI ACATGT 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 3 cut(s) 287, 592, 631
RsaI GTAC 3 cut(s) 97, 343, 414
RsaNI GTAC 3 cut(s) 96, 342, 413
RseI CAYNNNNRTG 3 cut(s) 81, 201, 646
SaqAI TTAA 1 cut(s) 528
SatI GCNGC 3 cut(s) 304, 451, 612
Sau96I GGNCC 3 cut(s) 287, 592, 631
SetI ASST 8 cut(s) 33, 141, 147, 296, 351, 461, 495, 526
SfaNI GCATC 4 cut(s) 3, 363, 421, 556
SinI GGWCC 2 cut(s) 287, 592
SmiMI CAYNNNNRTG 3 cut(s) 81, 201, 646
SpeI ACTAGT 1 cut(s) 250
SphI GCATGC 1 cut(s) 206
Sse9I AATT 3 cut(s) 89, 160, 514
SsiI CCGC 2 cut(s) 354, 595
SspMI CTAG 2 cut(s) 251, 635
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 135
TasI AATT 3 cut(s) 89, 160, 514
TfiI GAWTC 2 cut(s) 245, 599
Tru1I TTAA 1 cut(s) 528
Tru9I TTAA 1 cut(s) 528
TscAI CASTG 3 cut(s) 213, 431, 485
TseFI GTSAC 4 cut(s) 83, 128, 167, 482
TseI GCWGC 3 cut(s) 303, 450, 611
Tsp45I GTSAC 4 cut(s) 83, 128, 167, 482
TspDTI ATGAA 2 cut(s) 302, 353
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 3 cut(s) 213, 431, 485
VpaK11BI GGWCC 2 cut(s) 287, 592
XceI RCATGY 3 cut(s) 120, 206, 647
XspI CTAG 2 cut(s) 251, 635
Zsp2I ATGCAT 2 cut(s) 378, 649
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.