AT4G09690

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000226
Physical Location & Seq
Forward (+)
6124897 .. 6126120
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G09690.1

Sequence Viewer

Length: 1038 bp
ATGAGTTCTGAGGGAGTGTCACTACCGTTGATCCACGAGCATCTTATGATACCTTGGAATGACCTGAGGAAAGGTGATTGTTGTGGACGCTTGGAAGCTATCAGTGATGGCTACTATTGCAAAAGCTGTGATTTCTTTGTCCACAAGAAATGTGGCGATGAGTGCTCCGAGTTTATCGAACACCCATGTCACTCCATTCACACTCTCACCCTTGTACGTGGAGAGAGGATAAAACGAGGTACTTATTGCGATTTATGTGGAAAGAGTATAAACGTGAATCTCTATTATAGCTGCAAGATCTGTGACTTCGACGTGGACCTATATTGTGCCAAGTACCCACCACCAGAGGTTATTGATATTTCTGAGACGCATAACCACAAGCTCACCCTTATCAAGAAGCAGATCGAGTTTGATTGTGATGCTAAATGTGGCAATGATGGTTATGGGTTTCGTTACAAATGCCATGAATGTGAAGTATCATTCCATGTGGATTGCGTTTGGAATCCGTCGGAGGTAAAACATCTGTTAGAGTTAAACCACTCCCACCACTCCTTACACCCTCTTAAGCTCCTCACGGGTCTATTACCGATCTATATTGATGAAAAATGTCGTCTTTGTGGAAGAGAGATTGAAGATAAATTATTTAATCATTGTTCTTCTTGTAACTTCAGCGTGGATGTACGTTGTCTTTTAAACCCACCACCGCTATATTTGCTGGATTTGAAAGCTCATGATCACCAACTCACTCTTTTCCCAAGACTCGGTTATTTTATATGTAACGCTTGCGGGATGAGGGGAGATCGAAGCCCTTACAAAATAAAAGTAAAATCTAGAGTTGGGCAAAAAAGACCGGAACTGATTATCCAAATCGGAACCGATTATCCAAATCGGAACCGATTATCCAAATCGGAACCGATTATCCAAATTGGAACCGATCCGAACGTTGGACCCAAAACCGTATCTGAACCCGATGATTTGCCCTATTGGAACCTAAATTCCTCTACCCGAAAAACGAACCCGAACCCGACTCGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

345

Amino Acids

39.55

Weight (kDa)

6.97

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 62 - 110 1.5e-09 C1 domain
C1_2 PF03107 123 - 166 2.4e-07 C1 domain
C1_2 PF03107 182 - 229 6.1e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 704, 786
AclI AACGTT 1 cut(s) 942
AclWI GGATC 2 cut(s) 25, 929
AcsI RAATTY 1 cut(s) 994
AcuI CTGAAG 1 cut(s) 652
AfaI GTAC 4 cut(s) 216, 241, 335, 681
AfiI CCNNNNNNNGG 2 cut(s) 761, 944
AflII CTTAAG 1 cut(s) 563
AgsI TTSAA 2 cut(s) 632, 724
AjiI CACGTC 1 cut(s) 313
AluBI AGCT 6 cut(s) 98, 126, 291, 382, 568, 728
AluI AGCT 6 cut(s) 98, 126, 291, 382, 568, 728
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 2 cut(s) 25, 929
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 1 cut(s) 994
AspS9I GGNCC 2 cut(s) 316, 947
AsuHPI GGTGA 4 cut(s) 86, 199, 376, 728
AvaII GGWCC 2 cut(s) 316, 947
AxyI CCTNAGG 1 cut(s) 65
BauI CACGAG 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 278
BccI CCATC 2 cut(s) 101, 431
BclI TGATCA 1 cut(s) 733
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 1 cut(s) 831
BfrI CTTAAG 1 cut(s) 563
BglII AGATCT 1 cut(s) 297
BisI GCNGC 1 cut(s) 292
BlsI GCNGC 1 cut(s) 293
Bme18I GGWCC 2 cut(s) 316, 947
BmgBI CACGTC 1 cut(s) 313
BmgT120I GGNCC 2 cut(s) 316, 947
BmiI GGNNCC 6 cut(s) 874, 893, 912, 931, 949, 989
BmsI GCATC 2 cut(s) 49, 409
BsaAI YACGTR 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 850
Bsc4I CCNNNNNNNGG 2 cut(s) 761, 944
Bse21I CCTNAGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 2 cut(s) 682, 795
BseLI CCNNNNNNNGG 2 cut(s) 761, 944
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 56, 354
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 1 cut(s) 851
BslI CCNNNNNNNGG 2 cut(s) 761, 944
BsmAI GTCTC 1 cut(s) 359
BsmBI CGTCTC 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 7 cut(s) 30, 297, 402, 588, 733, 799, 934
BspACI CCGC 2 cut(s) 704, 786
BspCNI CTCAG 2 cut(s) 57, 355
BspHI TCATGA 1 cut(s) 730
BspLI GGNNCC 6 cut(s) 874, 893, 912, 931, 949, 989
BspPI GGATC 2 cut(s) 25, 929
BspTI CTTAAG 1 cut(s) 563
BsrDI GCAATG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 53
BssMI GATC 7 cut(s) 30, 297, 402, 588, 733, 799, 934
BssSI CACGAG 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 35
Bst4CI ACNGT 2 cut(s) 27, 958
Bst6I CTCTTC 1 cut(s) 616
BstAFI CTTAAG 1 cut(s) 563
BstBAI YACGTR 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 784
BstDEI CTNAG 3 cut(s) 9, 65, 363
BstF5I GGATG 2 cut(s) 682, 795
BstKTI GATC 7 cut(s) 33, 300, 405, 591, 736, 802, 937
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 7 cut(s) 30, 297, 402, 588, 733, 799, 934
BstMWI GCNNNNNNNGC 3 cut(s) 117, 162, 712
BstV1I GCAGC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 297
BstYI RGATCY 1 cut(s) 297
Bsu36I CCTNAGG 1 cut(s) 65
BtgZI GCGATG 1 cut(s) 171
BtrI CACGTC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 682, 795
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 784
CciI TCATGA 1 cut(s) 730
Cfr13I GGNCC 2 cut(s) 316, 947
CseI GACGC 2 cut(s) 96, 376
Csp6I GTAC 4 cut(s) 215, 240, 334, 680
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 4 cut(s) 186, 464, 485, 731
CviJI RGCY 8 cut(s) 98, 111, 126, 291, 382, 568, 728, 807
CviKI_1 RGCY 8 cut(s) 98, 111, 126, 291, 382, 568, 728, 807
CviQI GTAC 4 cut(s) 215, 240, 334, 680
DdeI CTNAG 3 cut(s) 9, 65, 363
DpnI GATC 7 cut(s) 32, 299, 404, 590, 735, 801, 936
DpnII GATC 7 cut(s) 30, 297, 402, 588, 733, 799, 934
DraI TTTAAA 1 cut(s) 693
Eam1104I CTCTTC 1 cut(s) 616
EarI CTCTTC 1 cut(s) 616
Eco130I CCWWGG 1 cut(s) 53
Eco47I GGWCC 2 cut(s) 316, 947
Eco57I CTGAAG 1 cut(s) 652
Eco81I CCTNAGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 359
FaeI CATG 4 cut(s) 189, 467, 488, 734
FatI CATG 4 cut(s) 185, 463, 484, 730
FauI CCCGC 1 cut(s) 779
FbaI TGATCA 1 cut(s) 733
Fnu4HI GCNGC 1 cut(s) 292
FokI GGATG 2 cut(s) 689, 802
Fsp4HI GCNGC 1 cut(s) 292
FspBI CTAG 1 cut(s) 831
GluI GCNGC 1 cut(s) 292
HapII CCGG 1 cut(s) 851
HgaI GACGC 2 cut(s) 96, 376
Hin1II CATG 4 cut(s) 189, 467, 488, 734
HinfI GANTC 5 cut(s) 277, 502, 759, 1027, 1032
HpaII CCGG 1 cut(s) 851
HphI GGTGA 4 cut(s) 86, 199, 376, 728
Hpy166II GTNNAC 3 cut(s) 86, 142, 316
Hpy188III TCNNGA 3 cut(s) 394, 731, 831
Hpy8I GTNNAC 3 cut(s) 86, 142, 316
Hpy99I CGWCG 2 cut(s) 314, 511
HpyCH4III ACNGT 2 cut(s) 27, 958
HpyCH4IV ACGT 5 cut(s) 217, 273, 312, 682, 942
HpyCH4V TGCA 2 cut(s) 120, 294
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 162, 712
HpyF3I CTNAG 3 cut(s) 9, 65, 363
HpySE526I ACGT 5 cut(s) 217, 273, 312, 682, 942
Hsp92II CATG 4 cut(s) 189, 467, 488, 734
Ksp22I TGATCA 1 cut(s) 733
Kzo9I GATC 7 cut(s) 30, 297, 402, 588, 733, 799, 934
LmnI GCTCC 2 cut(s) 170, 573
LpnPI CCDG 4 cut(s) 77, 357, 701, 864
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 2 cut(s) 49, 409
MaeI CTAG 1 cut(s) 831
MaeII ACGT 5 cut(s) 217, 273, 312, 682, 942
MaeIII GTNAC 6 cut(s) 18, 188, 302, 452, 662, 776
MalI GATC 7 cut(s) 32, 299, 404, 590, 735, 801, 936
MboI GATC 7 cut(s) 30, 297, 402, 588, 733, 799, 934
MboII GAAGA 3 cut(s) 633, 644, 648
MflI RGATCY 1 cut(s) 297
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 3 cut(s) 638, 924, 994
MlyI GAGTC 2 cut(s) 753, 1021
MmeI TCCRAC 2 cut(s) 489, 925
MseI TTAA 4 cut(s) 533, 564, 645, 692
MslI CAYNNNNRTG 1 cut(s) 468
MspCI CTTAAG 1 cut(s) 563
MspI CCGG 1 cut(s) 851
MwoI GCNNNNNNNGC 3 cut(s) 117, 162, 712
NdeII GATC 7 cut(s) 30, 297, 402, 588, 733, 799, 934
NlaIII CATG 4 cut(s) 189, 467, 488, 734
NlaIV GGNNCC 6 cut(s) 874, 893, 912, 931, 949, 989
NmuCI GTSAC 3 cut(s) 18, 188, 302
PagI TCATGA 1 cut(s) 730
PfeI GAWTC 3 cut(s) 277, 502, 1032
PkrI GCNGC 1 cut(s) 293
PleI GAGTC 2 cut(s) 753, 1021
PpsI GAGTC 2 cut(s) 753, 1021
Ppu21I YACGTR 1 cut(s) 218
Psp1406I AACGTT 1 cut(s) 942
PspN4I GGNNCC 6 cut(s) 874, 893, 912, 931, 949, 989
PspPI GGNCC 2 cut(s) 316, 947
PsuI RGATCY 1 cut(s) 297
RsaI GTAC 4 cut(s) 216, 241, 335, 681
RsaNI GTAC 4 cut(s) 215, 240, 334, 680
RseI CAYNNNNRTG 1 cut(s) 468
SaqAI TTAA 4 cut(s) 533, 564, 645, 692
SatI GCNGC 1 cut(s) 292
Sau3AI GATC 7 cut(s) 30, 297, 402, 588, 733, 799, 934
Sau96I GGNCC 2 cut(s) 316, 947
SchI GAGTC 2 cut(s) 753, 1021
SduI GDGCHC 1 cut(s) 167
SfaNI GCATC 2 cut(s) 49, 409
SinI GGWCC 2 cut(s) 316, 947
SmiMI CAYNNNNRTG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 3 cut(s) 638, 924, 994
SsiI CCGC 2 cut(s) 704, 786
SspMI CTAG 1 cut(s) 831
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 2 cut(s) 27, 958
TaiI ACGT 5 cut(s) 220, 276, 315, 685, 945
TaqI TCGA 5 cut(s) 177, 309, 405, 802, 1030
TasI AATT 3 cut(s) 638, 924, 994
TfiI GAWTC 3 cut(s) 277, 502, 1032
Tru1I TTAA 4 cut(s) 533, 564, 645, 692
Tru9I TTAA 4 cut(s) 533, 564, 645, 692
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 3 cut(s) 18, 188, 302
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 3 cut(s) 18, 188, 302
TspDTI ATGAA 2 cut(s) 480, 615
TspGWI ACGGA 1 cut(s) 495
TspRI CASTG 1 cut(s) 109
Vha464I CTTAAG 1 cut(s) 563
VpaK11BI GGWCC 2 cut(s) 316, 947
XapI RAATTY 1 cut(s) 994
XbaI TCTAGA 1 cut(s) 830
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 1 cut(s) 831
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.