Rh7AG404100

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000226
Physical Location & Seq
Forward (+)
53359158 .. 53359529
372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG404100.1

Sequence Viewer

Length: 372 bp
ATGCTTATCCTTCTGCTTTATTTGCAAGGAGTGCAATTTTATCTTTGTATTGCATGTGTTAAATTATCTCCTACTGCTAGGCACCGGTACGACGAGCATCCTCTCAAGCTCGCTTATGCTAGCATTGAACACGAGCTAGGTGAACATTATTGTGAAATATGTGTAGGAACACGAGATCCGACACATTGGTTCTACCAGTGCGATGATTGTGAGTTTGATCGTCATCCTCATTGCATTCTAGGGAGATATCCACGAGTTAATTTAGGGAGTGCCTGCAAGCACGACGCTCATGTCTCACCCCTTGTCATCCTTGTTAGTAAGTCAAGGAGCTCCATTCCGTTTGATAAGAGAGACAAACATCCGTCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

123

Amino Acids

14.23

Weight (kDa)

7.12

Isoelectric Point (pI)

55.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 29 - 79 3e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 81
AclWI GGATC 1 cut(s) 170
AfaI GTAC 1 cut(s) 89
AgeI ACCGGT 1 cut(s) 84
AgsI TTSAA 1 cut(s) 128
AloI GAACNNNNNNTCC 2 cut(s) 160, 192
AluBI AGCT 3 cut(s) 109, 136, 330
AluI AGCT 3 cut(s) 109, 136, 330
Alw21I GWGCWC 1 cut(s) 332
Alw26I GTCTC 2 cut(s) 298, 345
AlwI GGATC 1 cut(s) 170
AsiGI ACCGGT 1 cut(s) 84
AsuHPI GGTGA 2 cut(s) 152, 288
AsuNHI GCTAGC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 81
BanII GRGCYC 1 cut(s) 332
BauI CACGAG 3 cut(s) 131, 171, 252
Bbv12I GWGCWC 1 cut(s) 332
BcoDI GTCTC 2 cut(s) 298, 345
BfaI CTAG 4 cut(s) 78, 120, 137, 239
BmiI GGNNCC 1 cut(s) 83
BmsI GCATC 1 cut(s) 106
BmtI GCTAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 222
BseGI GGATG 4 cut(s) 97, 223, 306, 358
BseJI GATNNNNATC 1 cut(s) 222
BseMI GCAATG 1 cut(s) 229
BseNI ACTGG 1 cut(s) 196
BshNI GGYRCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 85
BsmAI GTCTC 2 cut(s) 298, 345
BsmI GAATGC 1 cut(s) 234
Bsp1286I GDGCHC 1 cut(s) 332
Bsp143I GATC 2 cut(s) 175, 217
BspLI GGNNCC 1 cut(s) 83
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 81
BsrDI GCAATG 1 cut(s) 229
BsrFI RCCGGY 1 cut(s) 84
BsrI ACTGG 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 84
BssMI GATC 2 cut(s) 175, 217
BssSI CACGAG 3 cut(s) 131, 171, 252
Bst2BI CACGAG 3 cut(s) 131, 171, 252
BstAPI GCANNNNNTGC 1 cut(s) 31
BstC8I GCNNGC 4 cut(s) 111, 121, 274, 278
BstF5I GGATG 4 cut(s) 97, 223, 306, 358
BstKTI GATC 2 cut(s) 178, 220
BstMAI GTCTC 2 cut(s) 298, 345
BstMBI GATC 2 cut(s) 175, 217
BstMWI GCNNNNNNNGC 2 cut(s) 22, 31
BstNSI RCATGY 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 4 cut(s) 97, 223, 306, 358
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 4 cut(s) 111, 121, 274, 278
Cfr10I RCCGGY 1 cut(s) 84
CseI GACGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 88
CspAI ACCGGT 1 cut(s) 84
CviAII CATG 2 cut(s) 54, 290
CviJI RGCY 3 cut(s) 109, 136, 330
CviKI_1 RGCY 3 cut(s) 109, 136, 330
CviQI GTAC 1 cut(s) 88
DpnI GATC 2 cut(s) 177, 219
DpnII GATC 2 cut(s) 175, 217
DrdI GACNNNNNNGTC 1 cut(s) 290
DseDI GACNNNNNNGTC 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 330
Eco24I GRGCYC 1 cut(s) 332
Eco32I GATATC 1 cut(s) 248
Eco53kI GAGCTC 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 330
EcoRV GATATC 1 cut(s) 248
EcoT38I GRGCYC 1 cut(s) 332
FaeI CATG 2 cut(s) 57, 293
FaiI YATR 4 cut(s) 55, 117, 160, 291
FatI CATG 2 cut(s) 53, 289
FokI GGATG 4 cut(s) 84, 210, 293, 345
FriOI GRGCYC 1 cut(s) 332
FspBI CTAG 4 cut(s) 78, 120, 137, 239
HapII CCGG 1 cut(s) 85
HgaI GACGC 1 cut(s) 293
Hin1II CATG 2 cut(s) 57, 293
HpaII CCGG 1 cut(s) 85
HphI GGTGA 2 cut(s) 152, 288
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 180
Hpy8I GTNNAC 1 cut(s) 143
Hpy99I CGWCG 2 cut(s) 95, 287
HpyAV CCTTC 1 cut(s) 20
HpyCH4V TGCA 5 cut(s) 25, 34, 53, 234, 276
HpyF10VI GCNNNNNNNGC 2 cut(s) 22, 31
Hsp92II CATG 2 cut(s) 57, 293
Kzo9I GATC 2 cut(s) 175, 217
LmnI GCTCC 2 cut(s) 327, 335
LpnPI CCDG 3 cut(s) 98, 209, 286
LweI GCATC 1 cut(s) 106
MaeI CTAG 4 cut(s) 78, 120, 137, 239
MalI GATC 2 cut(s) 177, 219
MboI GATC 2 cut(s) 175, 217
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 332
MluCI AATT 3 cut(s) 35, 62, 259
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 2 cut(s) 111, 237
MseI TTAA 2 cut(s) 60, 258
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 22, 31
NdeII GATC 2 cut(s) 175, 217
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 2 cut(s) 57, 293
NlaIV GGNNCC 1 cut(s) 83
NspI RCATGY 1 cut(s) 57
PctI GAATGC 1 cut(s) 234
PinAI ACCGGT 1 cut(s) 84
Psp124BI GAGCTC 1 cut(s) 332
PspN4I GGNNCC 1 cut(s) 83
PsuI RGATCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 89
RsaNI GTAC 1 cut(s) 88
RseI CAYNNNNRTG 1 cut(s) 150
SacI GAGCTC 1 cut(s) 332
SaqAI TTAA 2 cut(s) 60, 258
Sau3AI GATC 2 cut(s) 175, 217
SduI GDGCHC 1 cut(s) 332
SetI ASST 4 cut(s) 111, 138, 142, 332
SfaNI GCATC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 35, 62, 259
SspMI CTAG 4 cut(s) 78, 120, 137, 239
SstI GAGCTC 1 cut(s) 332
TasI AATT 3 cut(s) 35, 62, 259
Tru1I TTAA 2 cut(s) 60, 258
Tru9I TTAA 2 cut(s) 60, 258
TscAI CASTG 1 cut(s) 203
TspGWI ACGGA 2 cut(s) 327, 351
TspRI CASTG 1 cut(s) 203
XceI RCATGY 1 cut(s) 57
XspI CTAG 4 cut(s) 78, 120, 137, 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.