Rh3DG258200

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000226
Physical Location & Seq
Reverse (-)
25538720 .. 25539619
900 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG258200.1

Sequence Viewer

Length: 900 bp
ATGCGTGTAACCAAGATTGCAGCGACAGGTTCACTTATAGTTGCTTCCAGTGTGATTTCAACCTTGATCAAAAACTGTGCTTTCAATTGGACTGGTTTTAAACATTTCAGCCACGAGCATCCATTATTGTTGGAGAGAGAGTCAAAAAGGGAATACATTGGTCCGCGATTCTGCGATGGCTGCCAAGACCAAATACTTGGCCCTAGTTACACATGCATCAATACCTTCCAACGTCGCAAATGTGGCTTCAATCTCCATCAAAAATGTGCAGAGCTGCCCCATGAAATTGAGCACCCGATGCACCGTCAACACCCACTTTTTCTCCTTAACATATTTCAGGATATGAAGGTAAGTCACCTTTGTATTGTTTGCAACCAACCATGCAGATTCCTATATAGCTGTTCCATATGTGACTTCAACCTTGACCTGAGATGCGCCTCCAATTGGAAAAGCATTATGGGAAATGACACTCATGTGCATCAGTTTATGGTTGCCCGAAAGGAAATGTACGACCTCCACGTCAATTGTGATGTTTGTGGTGAGTACTGGAGTAGTGACTCCCTCTATTACATGTGTAGCATTTGCCAGCTTTTGGTTCATAAGGAATGCGCTTCATTACCAAGCAACATCAAAATACCTTGCCACCAACATCGCTTAAAACTGAATTGGTGCCTTAAAGACATTTACCCTAACCATCCATCTTGCAAAGTCTGCTATGCACGCATTCTTAAAAGTCGCGCTGTTTATTATTGCGATGAATGTAGCAGTTTTGTTGCCCACATTGCATGCACGACAGCTGAGTACTCCTGGCATGGGAAGAAGAAAATGCAGGCAGAGCCACTAACGATGATGATTCTGATGATGCTCCGATCAAACACTTCAGTCACCAGCATTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

299

Amino Acids

34.6

Weight (kDa)

8.51

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 36 - 90 3e-07 C1 domain
C1_2 PF03107 100 - 146 5.2e-08 C1 domain
C1_2 PF03107 158 - 204 7.9e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 518
AccB1I GGYRCC 1 cut(s) 669
AccB7I CCANNNNNTGG 1 cut(s) 592
AccII CGCG 2 cut(s) 166, 738
AciI CCGC 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 864
AfaI GTAC 3 cut(s) 509, 545, 803
AfiI CCNNNNNNNGG 3 cut(s) 444, 592, 813
AflIII ACRYGT 1 cut(s) 570
AgsI TTSAA 4 cut(s) 60, 85, 250, 418
AjiI CACGTC 1 cut(s) 520
AjnI CCWGG 1 cut(s) 806
AleI CACNNNNGTG 1 cut(s) 473
AluBI AGCT 4 cut(s) 274, 399, 589, 797
AluI AGCT 4 cut(s) 274, 399, 589, 797
Alw21I GWGCWC 1 cut(s) 294
AoxI GGCC 1 cut(s) 199
ApeKI GCWGC 3 cut(s) 20, 180, 274
AspLEI GCGC 3 cut(s) 437, 611, 740
AspS9I GGNCC 2 cut(s) 161, 200
AsuHPI GGTGA 3 cut(s) 347, 551, 877
AvaII GGWCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 669
BauI CACGAG 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 3 cut(s) 32, 167, 261
BccI CCATC 4 cut(s) 170, 264, 702, 706
BciT130I CCWGG 1 cut(s) 808
BclI TGATCA 1 cut(s) 66
BfaI CTAG 1 cut(s) 204
BisI GCNGC 3 cut(s) 21, 181, 275
BlsI GCNGC 3 cut(s) 22, 182, 276
BmcAI AGTACT 2 cut(s) 545, 803
Bme1390I CCNGG 1 cut(s) 808
Bme18I GGWCC 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 520
BmgT120I GGNCC 2 cut(s) 161, 200
BmiI GGNNCC 1 cut(s) 671
BmrFI CCNGG 1 cut(s) 808
BmsI GCATC 6 cut(s) 127, 225, 288, 422, 487, 852
BpmI CTGGAG 1 cut(s) 568
BsaXI ACNNNNNCTCC 4 cut(s) 125, 155, 306, 336
Bsc4I CCNNNNNNNGG 3 cut(s) 444, 592, 813
Bse1I ACTGG 3 cut(s) 48, 97, 551
Bse3DI GCAATG 1 cut(s) 780
BseBI CCWGG 1 cut(s) 808
BseGI GGATG 2 cut(s) 118, 694
BseLI CCNNNNNNNGG 3 cut(s) 444, 592, 813
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 2 cut(s) 419, 789
BseNI ACTGG 3 cut(s) 48, 97, 551
BseXI GCAGC 3 cut(s) 32, 167, 261
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 2 cut(s) 166, 738
BshFI GGCC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 669
BsiHKAI GWGCWC 1 cut(s) 294
BslI CCNNNNNNNGG 3 cut(s) 444, 592, 813
BsmI GAATGC 2 cut(s) 611, 723
BsnI GGCC 1 cut(s) 201
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 66, 869
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 201
BspCNI CTCAG 2 cut(s) 420, 790
BspFNI CGCG 2 cut(s) 166, 738
BspLI GGNNCC 1 cut(s) 671
BspT107I GGYRCC 1 cut(s) 669
BsrDI GCAATG 1 cut(s) 780
BsrI ACTGG 3 cut(s) 48, 97, 551
BssMI GATC 2 cut(s) 66, 869
BssSI CACGAG 1 cut(s) 113
Bst2BI CACGAG 1 cut(s) 113
Bst2UI CCWGG 1 cut(s) 808
Bst4CI ACNGT 2 cut(s) 77, 305
BstAPI GCANNNNNTGC 2 cut(s) 298, 711
BstC8I GCNNGC 4 cut(s) 587, 721, 787, 831
BstDEI CTNAG 2 cut(s) 428, 798
BstF5I GGATG 2 cut(s) 118, 694
BstFNI CGCG 2 cut(s) 166, 738
BstHHI GCGC 3 cut(s) 437, 611, 740
BstKTI GATC 2 cut(s) 69, 872
BstMBI GATC 2 cut(s) 66, 869
BstMWI GCNNNNNNNGC 7 cut(s) 180, 243, 298, 711, 720, 782, 835
BstNI CCWGG 1 cut(s) 808
BstNSI RCATGY 3 cut(s) 216, 574, 789
BstSCI CCNGG 1 cut(s) 806
BstUI CGCG 2 cut(s) 166, 738
BstV1I GCAGC 3 cut(s) 32, 167, 261
BstXI CCANNNNNNTGG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 201
BtgZI GCGATG 3 cut(s) 189, 635, 768
BtrI CACGTC 1 cut(s) 520
BtsCI GGATG 2 cut(s) 118, 694
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 4 cut(s) 587, 721, 787, 831
CfoI GCGC 3 cut(s) 437, 611, 740
Cfr13I GGNCC 2 cut(s) 161, 200
Csp6I GTAC 3 cut(s) 508, 544, 802
CspCI CAANNNNNGTGG 2 cut(s) 506, 541
CviAII CATG 7 cut(s) 213, 281, 381, 473, 571, 786, 812
CviJI RGCY 9 cut(s) 111, 180, 201, 246, 274, 399, 589, 797, 838
CviKI_1 RGCY 9 cut(s) 111, 180, 201, 246, 274, 399, 589, 797, 838
CviQI GTAC 3 cut(s) 508, 544, 802
DdeI CTNAG 2 cut(s) 428, 798
DpnI GATC 2 cut(s) 68, 871
DpnII GATC 2 cut(s) 66, 869
DraI TTTAAA 1 cut(s) 100
DrdI GACNNNNNNGTC 1 cut(s) 518
DseDI GACNNNNNNGTC 1 cut(s) 518
Eco47I GGWCC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 864
EcoRII CCWGG 1 cut(s) 806
EcoT22I ATGCAT 1 cut(s) 218
FaeI CATG 7 cut(s) 216, 284, 384, 476, 574, 789, 815
FatI CATG 7 cut(s) 212, 280, 380, 472, 570, 785, 811
FauNDI CATATG 1 cut(s) 407
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 21, 181, 275
FokI GGATG 2 cut(s) 105, 681
Fsp4HI GCNGC 3 cut(s) 21, 181, 275
FspBI CTAG 1 cut(s) 204
GlaI GCGC 3 cut(s) 436, 610, 739
GluI GCNGC 3 cut(s) 21, 181, 275
GsuI CTGGAG 1 cut(s) 568
HaeIII GGCC 1 cut(s) 201
HhaI GCGC 3 cut(s) 437, 611, 740
Hin1II CATG 7 cut(s) 216, 284, 384, 476, 574, 789, 815
Hin6I GCGC 3 cut(s) 435, 609, 738
HinP1I GCGC 3 cut(s) 435, 609, 738
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HinfI GANTC 5 cut(s) 140, 168, 387, 557, 853
HphI GGTGA 3 cut(s) 347, 551, 877
Hpy166II GTNNAC 2 cut(s) 32, 308
Hpy188I TCNGA 2 cut(s) 858, 869
Hpy188III TCNNGA 1 cut(s) 338
Hpy8I GTNNAC 2 cut(s) 32, 308
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 2 cut(s) 235, 340
HpyCH4III ACNGT 2 cut(s) 77, 305
HpyCH4IV ACGT 2 cut(s) 232, 519
HpyF10VI GCNNNNNNNGC 7 cut(s) 180, 243, 298, 711, 720, 782, 835
HpyF3I CTNAG 2 cut(s) 428, 798
HpySE526I ACGT 2 cut(s) 232, 519
Hsp92II CATG 7 cut(s) 216, 284, 384, 476, 574, 789, 815
HspAI GCGC 3 cut(s) 435, 609, 738
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 2 cut(s) 66, 869
LmnI GCTCC 1 cut(s) 870
Lsp1109I GCAGC 3 cut(s) 32, 167, 261
LweI GCATC 6 cut(s) 127, 225, 288, 422, 487, 852
MaeI CTAG 1 cut(s) 204
MaeII ACGT 2 cut(s) 232, 519
MaeIII GTNAC 6 cut(s) 7, 206, 353, 410, 554, 883
MalI GATC 2 cut(s) 68, 871
MboI GATC 2 cut(s) 66, 869
MboII GAAGA 2 cut(s) 829, 832
MfeI CAATTG 3 cut(s) 85, 442, 523
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 5 cut(s) 85, 285, 442, 523, 664
MlyI GAGTC 2 cut(s) 149, 551
MmeI TCCRAC 2 cut(s) 111, 253
MnlI CCTC 3 cut(s) 448, 524, 572
Mph1103I ATGCAT 1 cut(s) 218
MseI TTAA 5 cut(s) 99, 327, 656, 675, 729
MslI CAYNNNNRTG 1 cut(s) 473
MspA1I CMGCKG 1 cut(s) 797
MspR9I CCNGG 1 cut(s) 808
MunI CAATTG 3 cut(s) 85, 442, 523
Mva1269I GAATGC 2 cut(s) 611, 723
MvaI CCWGG 1 cut(s) 808
MvnI CGCG 2 cut(s) 166, 738
MwoI GCNNNNNNNGC 7 cut(s) 180, 243, 298, 711, 720, 782, 835
NdeI CATATG 1 cut(s) 407
NdeII GATC 2 cut(s) 66, 869
NlaIII CATG 7 cut(s) 216, 284, 384, 476, 574, 789, 815
NlaIV GGNNCC 1 cut(s) 671
NmuCI GTSAC 4 cut(s) 353, 410, 554, 883
NsiI ATGCAT 1 cut(s) 218
NspI RCATGY 3 cut(s) 216, 574, 789
OliI CACNNNNGTG 1 cut(s) 473
PaeI GCATGC 1 cut(s) 789
PciI ACATGT 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 516
PctI GAATGC 2 cut(s) 611, 723
PfeI GAWTC 3 cut(s) 168, 387, 853
PflMI CCANNNNNTGG 1 cut(s) 592
PkrI GCNGC 3 cut(s) 22, 182, 276
PleI GAGTC 2 cut(s) 148, 551
PpsI GAGTC 2 cut(s) 148, 551
PscI ACATGT 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 806
PspGI CCWGG 1 cut(s) 806
PspN4I GGNNCC 1 cut(s) 671
PspPI GGNCC 2 cut(s) 161, 200
PvuII CAGCTG 1 cut(s) 797
RsaI GTAC 3 cut(s) 509, 545, 803
RsaNI GTAC 3 cut(s) 508, 544, 802
RseI CAYNNNNRTG 1 cut(s) 473
SaqAI TTAA 5 cut(s) 99, 327, 656, 675, 729
SatI GCNGC 3 cut(s) 21, 181, 275
Sau3AI GATC 2 cut(s) 66, 869
Sau96I GGNCC 2 cut(s) 161, 200
ScaI AGTACT 2 cut(s) 545, 803
SchI GAGTC 2 cut(s) 149, 551
ScrFI CCNGG 1 cut(s) 808
SduI GDGCHC 1 cut(s) 294
SfaNI GCATC 6 cut(s) 127, 225, 288, 422, 487, 852
SinI GGWCC 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 473
SphI GCATGC 1 cut(s) 789
Sse9I AATT 5 cut(s) 85, 285, 442, 523, 664
SsiI CCGC 1 cut(s) 164
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 806
TaaI ACNGT 2 cut(s) 77, 305
TaiI ACGT 2 cut(s) 235, 522
TasI AATT 5 cut(s) 85, 285, 442, 523, 664
TatI WGTACW 2 cut(s) 543, 801
TfiI GAWTC 3 cut(s) 168, 387, 853
Tru1I TTAA 5 cut(s) 99, 327, 656, 675, 729
Tru9I TTAA 5 cut(s) 99, 327, 656, 675, 729
TscAI CASTG 1 cut(s) 55
TseFI GTSAC 4 cut(s) 353, 410, 554, 883
TseI GCWGC 3 cut(s) 20, 180, 274
Tsp45I GTSAC 4 cut(s) 353, 410, 554, 883
TspDTI ATGAA 5 cut(s) 297, 359, 587, 603, 771
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 592
VpaK11BI GGWCC 1 cut(s) 161
XceI RCATGY 3 cut(s) 216, 574, 789
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 2 cut(s) 545, 803
Zsp2I ATGCAT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.