BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C1_2 | PF03107 | 62 - 105 | 3.2e-09 | C1 domain |
| C1_2 | PF03107 | 191 - 241 | 3.7e-06 | C1 domain |
| C1_2 | PF03107 | 258 - 300 | 1.9e-11 | C1 domain |
| C1_2 | PF03107 | 309 - 357 | 1.9e-12 | C1 domain |
| C1_2 | PF03107 | 392 - 437 | 8e-13 | C1 domain |
| C1_2 | PF03107 | 510 - 552 | 6.1e-06 | C1 domain |
| C1_2 | PF03107 | 562 - 611 | 7.7e-13 | C1 domain |
| C1-like_CT | PF22926 | 633 - 670 | 3e-09 | C1 domain-like, C-terminal |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 166, 1900 |
| AccB1I | GGYRCC | 2 cut(s) | 166, 1900 |
| AccI | GTMKAC | 3 cut(s) | 561, 1790, 1921 |
| AccII | CGCG | 2 cut(s) | 912, 1070 |
| AciI | CCGC | 6 cut(s) | 359, 746, 910, 1434, 1476, 1648 |
| AclWI | GGATC | 3 cut(s) | 877, 1253, 1766 |
| AcoI | YGGCCR | 1 cut(s) | 1180 |
| AcsI | RAATTY | 3 cut(s) | 1223, 1426, 1631 |
| AcuI | CTGAAG | 1 cut(s) | 1534 |
| AfaI | GTAC | 6 cut(s) | 168, 1091, 1445, 1688, 1857, 1902 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1268 |
| AflIII | ACRYGT | 4 cut(s) | 459, 980, 1304, 1793 |
| AgsI | TTSAA | 8 cut(s) | 282, 295, 658, 869, 1100, 1381, 1947, 1973 |
| AhlI | ACTAGT | 3 cut(s) | 368, 805, 953 |
| AjnI | CCWGG | 2 cut(s) | 1601, 1858 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1503, 1535 |
| AluBI | AGCT | 4 cut(s) | 211, 893, 1047, 1957 |
| AluI | AGCT | 4 cut(s) | 211, 893, 1047, 1957 |
| Alw21I | GWGCWC | 1 cut(s) | 613 |
| Alw26I | GTCTC | 3 cut(s) | 419, 1461, 1833 |
| AlwI | GGATC | 3 cut(s) | 877, 1253, 1766 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 755 |
| AoxI | GGCC | 1 cut(s) | 1180 |
| ApeKI | GCWGC | 1 cut(s) | 1650 |
| ApoI | RAATTY | 3 cut(s) | 1223, 1426, 1631 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 653, 1515 |
| Asp718I | GGTACC | 2 cut(s) | 166, 1900 |
| AspA2I | CCTAGG | 1 cut(s) | 2027 |
| AspLEI | GCGC | 5 cut(s) | 450, 1070, 1135, 1601, 1655 |
| AsuHPI | GGTGA | 3 cut(s) | 703, 854, 1730 |
| AvrII | CCTAGG | 1 cut(s) | 2027 |
| BalI | TGGCCA | 1 cut(s) | 1182 |
| BanI | GGYRCC | 2 cut(s) | 166, 1900 |
| BanII | GRGCYC | 1 cut(s) | 549 |
| BauI | CACGAG | 2 cut(s) | 26, 626 |
| BbsI | GAAGAC | 4 cut(s) | 325, 857, 950, 1408 |
| Bbv12I | GWGCWC | 1 cut(s) | 613 |
| BbvI | GCAGC | 1 cut(s) | 1637 |
| BccI | CCATC | 7 cut(s) | 198, 334, 894, 1001, 1199, 1539, 1727 |
| BceAI | ACGGC | 1 cut(s) | 852 |
| BciT130I | CCWGG | 2 cut(s) | 1603, 1860 |
| BciVI | GTATCC | 2 cut(s) | 1348, 1558 |
| BclI | TGATCA | 1 cut(s) | 1161 |
| BcoDI | GTCTC | 3 cut(s) | 419, 1461, 1833 |
| BcuI | ACTAGT | 3 cut(s) | 368, 805, 953 |
| BfoI | RGCGCY | 1 cut(s) | 1602 |
| BfuI | GTATCC | 2 cut(s) | 1348, 1558 |
| BisI | GCNGC | 2 cut(s) | 359, 1651 |
| BlnI | CCTAGG | 1 cut(s) | 2027 |
| BlsI | GCNGC | 2 cut(s) | 360, 1652 |
| Bme1390I | CCNGG | 2 cut(s) | 1603, 1860 |
| BmiI | GGNNCC | 3 cut(s) | 168, 1474, 1902 |
| BmrFI | CCNGG | 2 cut(s) | 1603, 1860 |
| BmsI | GCATC | 8 cut(s) | 40, 68, 400, 406, 790, 951, 1055, 1940 |
| BpiI | GAAGAC | 4 cut(s) | 325, 857, 950, 1408 |
| BpuEI | CTTGAG | 3 cut(s) | 191, 575, 1577 |
| BsaAI | YACGTR | 1 cut(s) | 1855 |
| BsaBI | GATNNNNATC | 2 cut(s) | 920, 1155 |
| BsaJI | CCNNGG | 3 cut(s) | 1177, 1602, 2027 |
| BsaWI | WCCGGW | 1 cut(s) | 1114 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1503, 1533, 1884, 1914 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1268 |
| Bse1I | ACTGG | 2 cut(s) | 20, 749 |
| Bse3DI | GCAATG | 2 cut(s) | 124, 1286 |
| Bse8I | GATNNNNATC | 2 cut(s) | 920, 1155 |
| BseBI | CCWGG | 2 cut(s) | 1603, 1860 |
| BseDI | CCNNGG | 3 cut(s) | 1177, 1602, 2027 |
| BseJI | GATNNNNATC | 2 cut(s) | 920, 1155 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1268 |
| BseMI | GCAATG | 2 cut(s) | 124, 1286 |
| BseMII | CTCAG | 1 cut(s) | 1466 |
| BseNI | ACTGG | 2 cut(s) | 20, 749 |
| BseRI | GAGGAG | 1 cut(s) | 1136 |
| BseXI | GCAGC | 1 cut(s) | 1637 |
| Bsh1236I | CGCG | 2 cut(s) | 912, 1070 |
| BshFI | GGCC | 1 cut(s) | 1182 |
| BshNI | GGYRCC | 2 cut(s) | 166, 1900 |
| BsiHKAI | GWGCWC | 1 cut(s) | 613 |
| BsiSI | CCGG | 1 cut(s) | 1115 |
| BslFI | GGGAC | 1 cut(s) | 847 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1268 |
| BsmAI | GTCTC | 3 cut(s) | 419, 1461, 1833 |
| BsmBI | CGTCTC | 1 cut(s) | 419 |
| BsmFI | GGGAC | 1 cut(s) | 847 |
| BsnI | GGCC | 1 cut(s) | 1182 |
| Bsp1286I | GDGCHC | 2 cut(s) | 549, 613 |
| Bsp143I | GATC | 9 cut(s) | 49, 174, 679, 844, 882, 1161, 1258, 1693, 1771 |
| Bsp19I | CCATGG | 1 cut(s) | 1177 |
| BspACI | CCGC | 6 cut(s) | 359, 746, 910, 1434, 1476, 1648 |
| BspANI | GGCC | 1 cut(s) | 1182 |
| BspCNI | CTCAG | 1 cut(s) | 1465 |
| BspFNI | CGCG | 2 cut(s) | 912, 1070 |
| BspHI | TCATGA | 1 cut(s) | 879 |
| BspLI | GGNNCC | 3 cut(s) | 168, 1474, 1902 |
| BspPI | GGATC | 3 cut(s) | 877, 1253, 1766 |
| BspT107I | GGYRCC | 2 cut(s) | 166, 1900 |
| BsrDI | GCAATG | 2 cut(s) | 124, 1286 |
| BsrI | ACTGG | 2 cut(s) | 20, 749 |
| BssECI | CCNNGG | 3 cut(s) | 1177, 1602, 2027 |
| BssMI | GATC | 9 cut(s) | 49, 174, 679, 844, 882, 1161, 1258, 1693, 1771 |
| BssNAI | GTATAC | 2 cut(s) | 562, 1791 |
| BssSI | CACGAG | 2 cut(s) | 26, 626 |
| BssT1I | CCWWGG | 2 cut(s) | 1177, 2027 |
| Bst1107I | GTATAC | 2 cut(s) | 562, 1791 |
| Bst2BI | CACGAG | 2 cut(s) | 26, 626 |
| Bst2UI | CCWGG | 2 cut(s) | 1603, 1860 |
| Bst4CI | ACNGT | 4 cut(s) | 104, 231, 731, 1718 |
| Bst6I | CTCTTC | 2 cut(s) | 146, 1113 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 462 |
| BstBAI | YACGTR | 1 cut(s) | 1855 |
| BstC8I | GCNNGC | 1 cut(s) | 1955 |
| BstDEI | CTNAG | 2 cut(s) | 414, 1452 |
| BstDSI | CCRYGG | 1 cut(s) | 1177 |
| BstEII | GGTNACC | 1 cut(s) | 1208 |
| BstFNI | CGCG | 2 cut(s) | 912, 1070 |
| BstH2I | RGCGCY | 1 cut(s) | 1602 |
| BstHHI | GCGC | 5 cut(s) | 450, 1070, 1135, 1601, 1655 |
| BstKTI | GATC | 9 cut(s) | 52, 177, 682, 847, 885, 1164, 1261, 1696, 1774 |
| BstMAI | GTCTC | 3 cut(s) | 419, 1461, 1833 |
| BstMBI | GATC | 9 cut(s) | 49, 174, 679, 844, 882, 1161, 1258, 1693, 1771 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 114, 462, 642, 1058, 1067 |
| BstNI | CCWGG | 2 cut(s) | 1603, 1860 |
| BstNSI | RCATGY | 7 cut(s) | 463, 984, 1239, 1308, 1337, 1584, 1797 |
| BstPI | GGTNACC | 1 cut(s) | 1208 |
| BstSCI | CCNGG | 2 cut(s) | 1601, 1858 |
| BstUI | CGCG | 2 cut(s) | 912, 1070 |
| BstV1I | GCAGC | 1 cut(s) | 1637 |
| BstV2I | GAAGAC | 4 cut(s) | 325, 857, 950, 1408 |
| BstX2I | RGATCY | 1 cut(s) | 1771 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1782 |
| BstYI | RGATCY | 1 cut(s) | 1771 |
| BstZ17I | GTATAC | 2 cut(s) | 562, 1791 |
| BsuI | GTATCC | 2 cut(s) | 1348, 1558 |
| BsuRI | GGCC | 1 cut(s) | 1182 |
| BtgI | CCRYGG | 1 cut(s) | 1177 |
| BtgZI | GCGATG | 2 cut(s) | 711, 923 |
| BtsI | GCAGTG | 2 cut(s) | 88, 691 |
| BtsIMutI | CAGTG | 2 cut(s) | 88, 691 |
| Cac8I | GCNNGC | 1 cut(s) | 1955 |
| CaiI | CAGNNNCTG | 1 cut(s) | 755 |
| CciI | TCATGA | 1 cut(s) | 879 |
| CfoI | GCGC | 5 cut(s) | 450, 1070, 1135, 1601, 1655 |
| CseI | GACGC | 1 cut(s) | 145 |
| Csp6I | GTAC | 6 cut(s) | 167, 1090, 1444, 1687, 1856, 1901 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 811, 846 |
| CviQI | GTAC | 6 cut(s) | 167, 1090, 1444, 1687, 1856, 1901 |
| DdeI | CTNAG | 2 cut(s) | 414, 1452 |
| DpnI | GATC | 9 cut(s) | 51, 176, 681, 846, 884, 1163, 1260, 1695, 1773 |
| DpnII | GATC | 9 cut(s) | 49, 174, 679, 844, 882, 1161, 1258, 1693, 1771 |
| EaeI | YGGCCR | 1 cut(s) | 1180 |
| Eam1104I | CTCTTC | 2 cut(s) | 146, 1113 |
| EarI | CTCTTC | 2 cut(s) | 146, 1113 |
| Eco130I | CCWWGG | 2 cut(s) | 1177, 2027 |
| Eco24I | GRGCYC | 1 cut(s) | 549 |
| Eco57I | CTGAAG | 1 cut(s) | 1534 |
| Eco91I | GGTNACC | 1 cut(s) | 1208 |
| EcoO65I | GGTNACC | 1 cut(s) | 1208 |
| EcoRII | CCWGG | 2 cut(s) | 1601, 1858 |
| EcoT14I | CCWWGG | 2 cut(s) | 1177, 2027 |
| EcoT38I | GRGCYC | 1 cut(s) | 549 |
| ErhI | CCWWGG | 2 cut(s) | 1177, 2027 |
| Esp3I | CGTCTC | 1 cut(s) | 419 |
| FaqI | GGGAC | 1 cut(s) | 847 |
| FauI | CCCGC | 1 cut(s) | 917 |
| FbaI | TGATCA | 1 cut(s) | 1161 |
| FblI | GTMKAC | 3 cut(s) | 561, 1790, 1921 |
| Fnu4HI | GCNGC | 2 cut(s) | 359, 1651 |
| FriOI | GRGCYC | 1 cut(s) | 549 |
| Fsp4HI | GCNGC | 2 cut(s) | 359, 1651 |
| GlaI | GCGC | 5 cut(s) | 449, 1069, 1134, 1600, 1654 |
| GluI | GCNGC | 2 cut(s) | 359, 1651 |
| HaeII | RGCGCY | 1 cut(s) | 1602 |
| HaeIII | GGCC | 1 cut(s) | 1182 |
| HapII | CCGG | 1 cut(s) | 1115 |
| HgaI | GACGC | 1 cut(s) | 145 |
| HhaI | GCGC | 5 cut(s) | 450, 1070, 1135, 1601, 1655 |
| Hin6I | GCGC | 5 cut(s) | 448, 1068, 1133, 1599, 1653 |
| HinP1I | GCGC | 5 cut(s) | 448, 1068, 1133, 1599, 1653 |
| HincII | GTYRAC | 1 cut(s) | 1739 |
| HindII | GTYRAC | 1 cut(s) | 1739 |
| HindIII | AAGCTT | 1 cut(s) | 1955 |
| HinfI | GANTC | 7 cut(s) | 161, 763, 1156, 1194, 1385, 1678, 1809 |
| HpaII | CCGG | 1 cut(s) | 1115 |
| HphI | GGTGA | 3 cut(s) | 703, 854, 1730 |
| Hpy166II | GTNNAC | 7 cut(s) | 25, 227, 562, 688, 1739, 1791, 1922 |
| Hpy188I | TCNGA | 4 cut(s) | 54, 579, 1161, 1683 |
| Hpy188III | TCNNGA | 7 cut(s) | 26, 626, 880, 1423, 1484, 1556, 1947 |
| Hpy8I | GTNNAC | 7 cut(s) | 25, 227, 562, 688, 1739, 1791, 1922 |
| Hpy99I | CGWCG | 3 cut(s) | 161, 1075, 1694 |
| HpyAV | CCTTC | 4 cut(s) | 195, 437, 647, 1100 |
| HpyCH4III | ACNGT | 4 cut(s) | 104, 231, 731, 1718 |
| HpyCH4IV | ACGT | 4 cut(s) | 420, 428, 558, 1854 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 114, 462, 642, 1058, 1067 |
| HpyF3I | CTNAG | 2 cut(s) | 414, 1452 |
| HpySE526I | ACGT | 4 cut(s) | 420, 428, 558, 1854 |
| HspAI | GCGC | 5 cut(s) | 448, 1068, 1133, 1599, 1653 |
| KpnI | GGTACC | 2 cut(s) | 170, 1904 |
| Ksp22I | TGATCA | 1 cut(s) | 1161 |
| Kzo9I | GATC | 9 cut(s) | 49, 174, 679, 844, 882, 1161, 1258, 1693, 1771 |
| LmnI | GCTCC | 1 cut(s) | 608 |
| Lsp1109I | GCAGC | 1 cut(s) | 1637 |
| LweI | GCATC | 8 cut(s) | 40, 68, 400, 406, 790, 951, 1055, 1940 |
| MaeII | ACGT | 4 cut(s) | 420, 428, 558, 1854 |
| MaeIII | GTNAC | 4 cut(s) | 15, 709, 1208, 1583 |
| MalI | GATC | 9 cut(s) | 51, 176, 681, 846, 884, 1163, 1260, 1695, 1773 |
| MboI | GATC | 9 cut(s) | 49, 174, 679, 844, 882, 1161, 1258, 1693, 1771 |
| MfeI | CAATTG | 1 cut(s) | 451 |
| MflI | RGATCY | 1 cut(s) | 1771 |
| MhlI | GDGCHC | 2 cut(s) | 549, 613 |
| MlsI | TGGCCA | 1 cut(s) | 1182 |
| MluNI | TGGCCA | 1 cut(s) | 1182 |
| MlyI | GAGTC | 3 cut(s) | 170, 772, 1188 |
| MmeI | TCCRAC | 2 cut(s) | 1365, 1620 |
| Mox20I | TGGCCA | 1 cut(s) | 1182 |
| MroXI | GAANNNNTTC | 2 cut(s) | 653, 1515 |
| MscI | TGGCCA | 1 cut(s) | 1182 |
| MseI | TTAA | 2 cut(s) | 1190, 1355 |
| MslI | CAYNNNNRTG | 1 cut(s) | 696 |
| Msp20I | TGGCCA | 1 cut(s) | 1182 |
| MspA1I | CMGCKG | 2 cut(s) | 1434, 1650 |
| MspI | CCGG | 1 cut(s) | 1115 |
| MspR9I | CCNGG | 2 cut(s) | 1603, 1860 |
| MunI | CAATTG | 1 cut(s) | 451 |
| MvaI | CCWGG | 2 cut(s) | 1603, 1860 |
| MvnI | CGCG | 2 cut(s) | 912, 1070 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 114, 462, 642, 1058, 1067 |
| NcoI | CCATGG | 1 cut(s) | 1177 |
| NdeII | GATC | 9 cut(s) | 49, 174, 679, 844, 882, 1161, 1258, 1693, 1771 |
| NlaIV | GGNNCC | 3 cut(s) | 168, 1474, 1902 |
| NmuCI | GTSAC | 2 cut(s) | 709, 1583 |
| NspI | RCATGY | 7 cut(s) | 463, 984, 1239, 1308, 1337, 1584, 1797 |
| PagI | TCATGA | 1 cut(s) | 879 |
| PciI | ACATGT | 4 cut(s) | 459, 980, 1304, 1793 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1146 |
| PdmI | GAANNNNTTC | 2 cut(s) | 653, 1515 |
| PfeI | GAWTC | 4 cut(s) | 1156, 1385, 1678, 1809 |
| PkrI | GCNGC | 2 cut(s) | 360, 1652 |
| PleI | GAGTC | 3 cut(s) | 169, 771, 1188 |
| PpsI | GAGTC | 3 cut(s) | 169, 771, 1188 |
| Ppu21I | YACGTR | 1 cut(s) | 1855 |
| PscI | ACATGT | 4 cut(s) | 459, 980, 1304, 1793 |
| Psp6I | CCWGG | 2 cut(s) | 1601, 1858 |
| PspEI | GGTNACC | 1 cut(s) | 1208 |
| PspGI | CCWGG | 2 cut(s) | 1601, 1858 |
| PspN4I | GGNNCC | 3 cut(s) | 168, 1474, 1902 |
| PstNI | CAGNNNCTG | 1 cut(s) | 755 |
| PsuI | RGATCY | 1 cut(s) | 1771 |
| RsaI | GTAC | 6 cut(s) | 168, 1091, 1445, 1688, 1857, 1902 |
| RsaNI | GTAC | 6 cut(s) | 167, 1090, 1444, 1687, 1856, 1901 |
| RseI | CAYNNNNRTG | 1 cut(s) | 696 |
| SaqAI | TTAA | 2 cut(s) | 1190, 1355 |
| SatI | GCNGC | 2 cut(s) | 359, 1651 |
| Sau3AI | GATC | 9 cut(s) | 49, 174, 679, 844, 882, 1161, 1258, 1693, 1771 |
| SchI | GAGTC | 3 cut(s) | 170, 772, 1188 |
| ScrFI | CCNGG | 2 cut(s) | 1603, 1860 |
| SduI | GDGCHC | 2 cut(s) | 549, 613 |
| SfaNI | GCATC | 8 cut(s) | 40, 68, 400, 406, 790, 951, 1055, 1940 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 696 |
| SmlI | CTYRAG | 3 cut(s) | 206, 590, 1556 |
| SmoI | CTYRAG | 3 cut(s) | 206, 590, 1556 |
| SpeI | ACTAGT | 3 cut(s) | 368, 805, 953 |
| SsiI | CCGC | 6 cut(s) | 359, 746, 910, 1434, 1476, 1648 |
| StyD4I | CCNGG | 2 cut(s) | 1601, 1858 |
| StyI | CCWWGG | 2 cut(s) | 1177, 2027 |
| TaaI | ACNGT | 4 cut(s) | 104, 231, 731, 1718 |
| TaiI | ACGT | 4 cut(s) | 423, 431, 561, 1857 |
| TauI | GCSGC | 1 cut(s) | 361 |
| TfiI | GAWTC | 4 cut(s) | 1156, 1385, 1678, 1809 |
| Tru1I | TTAA | 2 cut(s) | 1190, 1355 |
| Tru9I | TTAA | 2 cut(s) | 1190, 1355 |
| TscAI | CASTG | 2 cut(s) | 88, 698 |
| TseFI | GTSAC | 2 cut(s) | 709, 1583 |
| TseI | GCWGC | 1 cut(s) | 1650 |
| Tsp45I | GTSAC | 2 cut(s) | 709, 1583 |
| TspGWI | ACGGA | 2 cut(s) | 621, 1251 |
| TspRI | CASTG | 2 cut(s) | 88, 698 |
| XapI | RAATTY | 3 cut(s) | 1223, 1426, 1631 |
| XbaI | TCTAGA | 1 cut(s) | 1483 |
| XceI | RCATGY | 7 cut(s) | 463, 984, 1239, 1308, 1337, 1584, 1797 |
| XmaJI | CCTAGG | 1 cut(s) | 2027 |
| XmiI | GTMKAC | 3 cut(s) | 561, 1790, 1921 |
| XmnI | GAANNNNTTC | 2 cut(s) | 653, 1515 |