C1 domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 517 |
| AccB1I | GGYRCC | 1 cut(s) | 621 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 544 |
| AccII | CGCG | 2 cut(s) | 166, 690 |
| AciI | CCGC | 2 cut(s) | 164, 849 |
| AcsI | RAATTY | 1 cut(s) | 922 |
| AcuI | CTGAAG | 1 cut(s) | 811 |
| AfaI | GTAC | 3 cut(s) | 508, 755, 1283 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 148, 444, 544, 1076 |
| AgsI | TTSAA | 5 cut(s) | 60, 84, 250, 418, 629 |
| AjiI | CACGTC | 1 cut(s) | 519 |
| AjnI | CCWGG | 2 cut(s) | 758, 926 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1193, 1225 |
| AluBI | AGCT | 9 cut(s) | 274, 399, 541, 613, 749, 948, 1221, 1309, 1336 |
| AluI | AGCT | 9 cut(s) | 274, 399, 541, 613, 749, 948, 1221, 1309, 1336 |
| Alw21I | GWGCWC | 2 cut(s) | 294, 1003 |
| Alw26I | GTCTC | 2 cut(s) | 957, 1028 |
| AoxI | GGCC | 1 cut(s) | 199 |
| ApeKI | GCWGC | 4 cut(s) | 20, 180, 274, 948 |
| ApoI | RAATTY | 1 cut(s) | 922 |
| AspLEI | GCGC | 3 cut(s) | 437, 563, 692 |
| AspS9I | GGNCC | 2 cut(s) | 161, 200 |
| AsuC2I | CCSGG | 1 cut(s) | 495 |
| AsuHPI | GGTGA | 2 cut(s) | 824, 1028 |
| AvaII | GGWCC | 1 cut(s) | 161 |
| BanI | GGYRCC | 1 cut(s) | 621 |
| BanII | GRGCYC | 1 cut(s) | 1069 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 490, 522 |
| BauI | CACGAG | 2 cut(s) | 112, 1011 |
| BbsI | GAAGAC | 1 cut(s) | 636 |
| Bbv12I | GWGCWC | 2 cut(s) | 294, 1003 |
| BbvI | GCAGC | 4 cut(s) | 32, 167, 261, 935 |
| BccI | CCATC | 4 cut(s) | 264, 654, 658, 1248 |
| BceAI | ACGGC | 2 cut(s) | 193, 1204 |
| BciT130I | CCWGG | 2 cut(s) | 760, 928 |
| BclI | TGATCA | 2 cut(s) | 528, 856 |
| BcnI | CCSGG | 1 cut(s) | 495 |
| BcoDI | GTCTC | 2 cut(s) | 957, 1028 |
| BfaI | CTAG | 3 cut(s) | 204, 1320, 1337 |
| BisI | GCNGC | 5 cut(s) | 21, 181, 275, 849, 949 |
| BlsI | GCNGC | 5 cut(s) | 22, 182, 276, 850, 950 |
| BmcAI | AGTACT | 1 cut(s) | 755 |
| Bme1390I | CCNGG | 3 cut(s) | 495, 760, 928 |
| Bme18I | GGWCC | 1 cut(s) | 161 |
| BmgBI | CACGTC | 1 cut(s) | 519 |
| BmgT120I | GGNCC | 2 cut(s) | 161, 200 |
| BmiI | GGNNCC | 3 cut(s) | 623, 1068, 1198 |
| BmrFI | CCNGG | 3 cut(s) | 495, 760, 928 |
| BmsI | GCATC | 9 cut(s) | 126, 225, 288, 422, 486, 799, 918, 1008, 1220 |
| BpiI | GAAGAC | 1 cut(s) | 636 |
| BpuEI | CTTGAG | 2 cut(s) | 1045, 1289 |
| BpuMI | CCSGG | 1 cut(s) | 495 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1239 |
| BsaJI | CCNNGG | 1 cut(s) | 759 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 306, 336 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 148, 444, 544, 1076 |
| Bse1I | ACTGG | 4 cut(s) | 48, 96, 852, 1045 |
| Bse3DI | GCAATG | 1 cut(s) | 732 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1239 |
| BseBI | CCWGG | 2 cut(s) | 760, 928 |
| BseDI | CCNNGG | 1 cut(s) | 759 |
| BseGI | GGATG | 4 cut(s) | 117, 646, 909, 1297 |
| BseJI | GATNNNNATC | 1 cut(s) | 1239 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 148, 444, 544, 1076 |
| BseMI | GCAATG | 1 cut(s) | 732 |
| BseMII | CTCAG | 3 cut(s) | 419, 741, 1016 |
| BseNI | ACTGG | 4 cut(s) | 48, 96, 852, 1045 |
| BseRI | GAGGAG | 3 cut(s) | 314, 1142, 1145 |
| BseXI | GCAGC | 4 cut(s) | 32, 167, 261, 935 |
| BsgI | GTGCAG | 2 cut(s) | 288, 934 |
| Bsh1236I | CGCG | 2 cut(s) | 166, 690 |
| BshFI | GGCC | 1 cut(s) | 201 |
| BshNI | GGYRCC | 1 cut(s) | 621 |
| BsiHKAI | GWGCWC | 2 cut(s) | 294, 1003 |
| BsiSI | CCGG | 1 cut(s) | 495 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 148, 444, 544, 1076 |
| BsmAI | GTCTC | 2 cut(s) | 957, 1028 |
| BsmBI | CGTCTC | 2 cut(s) | 957, 1028 |
| BsmI | GAATGC | 2 cut(s) | 22, 563 |
| BsnI | GGCC | 1 cut(s) | 201 |
| Bsp1286I | GDGCHC | 3 cut(s) | 294, 1003, 1069 |
| Bsp143I | GATC | 4 cut(s) | 528, 816, 856, 1294 |
| BspACI | CCGC | 2 cut(s) | 164, 849 |
| BspANI | GGCC | 1 cut(s) | 201 |
| BspCNI | CTCAG | 3 cut(s) | 420, 742, 1015 |
| BspFNI | CGCG | 2 cut(s) | 166, 690 |
| BspLI | GGNNCC | 3 cut(s) | 623, 1068, 1198 |
| BspT107I | GGYRCC | 1 cut(s) | 621 |
| BsrDI | GCAATG | 1 cut(s) | 732 |
| BsrI | ACTGG | 4 cut(s) | 48, 96, 852, 1045 |
| BssECI | CCNNGG | 1 cut(s) | 759 |
| BssMI | GATC | 4 cut(s) | 528, 816, 856, 1294 |
| BssSI | CACGAG | 2 cut(s) | 112, 1011 |
| Bst2BI | CACGAG | 2 cut(s) | 112, 1011 |
| Bst2UI | CCWGG | 2 cut(s) | 760, 928 |
| Bst4CI | ACNGT | 3 cut(s) | 76, 305, 884 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 298, 663 |
| BstC8I | GCNNGC | 4 cut(s) | 539, 673, 739, 778 |
| BstDEI | CTNAG | 3 cut(s) | 428, 750, 1002 |
| BstF5I | GGATG | 4 cut(s) | 117, 646, 909, 1297 |
| BstFNI | CGCG | 2 cut(s) | 166, 690 |
| BstHHI | GCGC | 3 cut(s) | 437, 563, 692 |
| BstKTI | GATC | 4 cut(s) | 531, 819, 859, 1297 |
| BstMAI | GTCTC | 2 cut(s) | 957, 1028 |
| BstMBI | GATC | 4 cut(s) | 528, 816, 856, 1294 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 180, 298, 663, 672, 734, 782 |
| BstNI | CCWGG | 2 cut(s) | 760, 928 |
| BstNSI | RCATGY | 2 cut(s) | 216, 741 |
| BstSCI | CCNGG | 3 cut(s) | 493, 758, 926 |
| BstUI | CGCG | 2 cut(s) | 166, 690 |
| BstV1I | GCAGC | 4 cut(s) | 32, 167, 261, 935 |
| BstV2I | GAAGAC | 1 cut(s) | 636 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 197 |
| BsuRI | GGCC | 1 cut(s) | 201 |
| BtgZI | GCGATG | 3 cut(s) | 587, 720, 1130 |
| BtrI | CACGTC | 1 cut(s) | 519 |
| BtsCI | GGATG | 4 cut(s) | 117, 646, 909, 1297 |
| BtsIMutI | CAGTG | 3 cut(s) | 55, 859, 1097 |
| Cac8I | GCNNGC | 4 cut(s) | 539, 673, 739, 778 |
| CfoI | GCGC | 3 cut(s) | 437, 563, 692 |
| Cfr13I | GGNCC | 2 cut(s) | 161, 200 |
| CseI | GACGC | 1 cut(s) | 1010 |
| Csp6I | GTAC | 3 cut(s) | 507, 754, 1282 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 505, 540, 1174, 1209 |
| CviAII | CATG | 6 cut(s) | 213, 281, 381, 738, 1130, 1254 |
| CviQI | GTAC | 3 cut(s) | 507, 754, 1282 |
| DdeI | CTNAG | 3 cut(s) | 428, 750, 1002 |
| DpnI | GATC | 4 cut(s) | 530, 818, 858, 1296 |
| DpnII | GATC | 4 cut(s) | 528, 816, 856, 1294 |
| DraI | TTTAAA | 1 cut(s) | 99 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 517 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 517 |
| Eco24I | GRGCYC | 1 cut(s) | 1069 |
| Eco47I | GGWCC | 1 cut(s) | 161 |
| Eco57I | CTGAAG | 1 cut(s) | 811 |
| EcoRII | CCWGG | 2 cut(s) | 758, 926 |
| EcoT22I | ATGCAT | 2 cut(s) | 218, 479 |
| EcoT38I | GRGCYC | 1 cut(s) | 1069 |
| Esp3I | CGTCTC | 2 cut(s) | 957, 1028 |
| FaeI | CATG | 6 cut(s) | 216, 284, 384, 741, 1133, 1257 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1054, 1086 |
| FatI | CATG | 6 cut(s) | 212, 280, 380, 737, 1129, 1253 |
| FauNDI | CATATG | 3 cut(s) | 407, 473, 1315 |
| FbaI | TGATCA | 2 cut(s) | 528, 856 |
| Fnu4HI | GCNGC | 5 cut(s) | 21, 181, 275, 849, 949 |
| FokI | GGATG | 4 cut(s) | 104, 633, 896, 1284 |
| FriOI | GRGCYC | 1 cut(s) | 1069 |
| Fsp4HI | GCNGC | 5 cut(s) | 21, 181, 275, 849, 949 |
| FspBI | CTAG | 3 cut(s) | 204, 1320, 1337 |
| GlaI | GCGC | 3 cut(s) | 436, 562, 691 |
| GluI | GCNGC | 5 cut(s) | 21, 181, 275, 849, 949 |
| HaeIII | GGCC | 1 cut(s) | 201 |
| HapII | CCGG | 1 cut(s) | 495 |
| HgaI | GACGC | 1 cut(s) | 1010 |
| HhaI | GCGC | 3 cut(s) | 437, 563, 692 |
| Hin1II | CATG | 6 cut(s) | 216, 284, 384, 741, 1133, 1257 |
| Hin6I | GCGC | 3 cut(s) | 435, 561, 690 |
| HinP1I | GCGC | 3 cut(s) | 435, 561, 690 |
| HincII | GTYRAC | 1 cut(s) | 308 |
| HindII | GTYRAC | 1 cut(s) | 308 |
| HinfI | GANTC | 5 cut(s) | 168, 387, 800, 935, 1133 |
| HpaII | CCGG | 1 cut(s) | 495 |
| HphI | GGTGA | 2 cut(s) | 824, 1028 |
| Hpy166II | GTNNAC | 3 cut(s) | 32, 308, 1050 |
| Hpy188I | TCNGA | 3 cut(s) | 805, 816, 1262 |
| Hpy188III | TCNNGA | 1 cut(s) | 338 |
| Hpy8I | GTNNAC | 3 cut(s) | 32, 308, 1050 |
| Hpy99I | CGWCG | 3 cut(s) | 179, 237, 1295 |
| HpyAV | CCTTC | 4 cut(s) | 235, 492, 1080, 1165 |
| HpyCH4III | ACNGT | 3 cut(s) | 76, 305, 884 |
| HpyCH4IV | ACGT | 3 cut(s) | 232, 518, 1140 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 180, 298, 663, 672, 734, 782 |
| HpyF3I | CTNAG | 3 cut(s) | 428, 750, 1002 |
| HpySE526I | ACGT | 3 cut(s) | 232, 518, 1140 |
| Hsp92II | CATG | 6 cut(s) | 216, 284, 384, 741, 1133, 1257 |
| HspAI | GCGC | 3 cut(s) | 435, 561, 690 |
| Ksp22I | TGATCA | 2 cut(s) | 528, 856 |
| Kzo9I | GATC | 4 cut(s) | 528, 816, 856, 1294 |
| LmnI | GCTCC | 2 cut(s) | 817, 1072 |
| Lsp1109I | GCAGC | 4 cut(s) | 32, 167, 261, 935 |
| LweI | GCATC | 9 cut(s) | 126, 225, 288, 422, 486, 799, 918, 1008, 1220 |
| MaeI | CTAG | 3 cut(s) | 204, 1320, 1337 |
| MaeII | ACGT | 3 cut(s) | 232, 518, 1140 |
| MaeIII | GTNAC | 5 cut(s) | 7, 206, 410, 830, 1005 |
| MalI | GATC | 4 cut(s) | 530, 818, 858, 1296 |
| MboI | GATC | 4 cut(s) | 528, 816, 856, 1294 |
| MboII | GAAGA | 4 cut(s) | 641, 776, 779, 1340 |
| MfeI | CAATTG | 3 cut(s) | 84, 442, 522 |
| MhlI | GDGCHC | 3 cut(s) | 294, 1003, 1069 |
| MluCI | AATT | 7 cut(s) | 84, 285, 442, 522, 616, 891, 922 |
| MlyI | GAGTC | 1 cut(s) | 1127 |
| MmeI | TCCRAC | 2 cut(s) | 110, 253 |
| Mph1103I | ATGCAT | 2 cut(s) | 218, 479 |
| MseI | TTAA | 6 cut(s) | 98, 350, 608, 873, 1116, 1125 |
| MslI | CAYNNNNRTG | 1 cut(s) | 472 |
| MspA1I | CMGCKG | 1 cut(s) | 749 |
| MspI | CCGG | 1 cut(s) | 495 |
| MspR9I | CCNGG | 3 cut(s) | 495, 760, 928 |
| MunI | CAATTG | 3 cut(s) | 84, 442, 522 |
| Mva1269I | GAATGC | 2 cut(s) | 22, 563 |
| MvaI | CCWGG | 2 cut(s) | 760, 928 |
| MvnI | CGCG | 2 cut(s) | 166, 690 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 180, 298, 663, 672, 734, 782 |
| NciI | CCSGG | 1 cut(s) | 495 |
| NdeI | CATATG | 3 cut(s) | 407, 473, 1315 |
| NdeII | GATC | 4 cut(s) | 528, 816, 856, 1294 |
| NlaIII | CATG | 6 cut(s) | 216, 284, 384, 741, 1133, 1257 |
| NlaIV | GGNNCC | 3 cut(s) | 623, 1068, 1198 |
| NmuCI | GTSAC | 2 cut(s) | 410, 830 |
| NsiI | ATGCAT | 2 cut(s) | 218, 479 |
| NspI | RCATGY | 2 cut(s) | 216, 741 |
| PaeI | GCATGC | 1 cut(s) | 741 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 515, 1018 |
| PctI | GAATGC | 2 cut(s) | 22, 563 |
| PfeI | GAWTC | 4 cut(s) | 168, 387, 800, 935 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 544 |
| PfoI | TCCNGGA | 1 cut(s) | 926 |
| PkrI | GCNGC | 5 cut(s) | 22, 182, 276, 850, 950 |
| PleI | GAGTC | 1 cut(s) | 1127 |
| PpsI | GAGTC | 1 cut(s) | 1127 |
| Psp6I | CCWGG | 2 cut(s) | 758, 926 |
| PspGI | CCWGG | 2 cut(s) | 758, 926 |
| PspN4I | GGNNCC | 3 cut(s) | 623, 1068, 1198 |
| PspPI | GGNCC | 2 cut(s) | 161, 200 |
| PvuII | CAGCTG | 1 cut(s) | 749 |
| RsaI | GTAC | 3 cut(s) | 508, 755, 1283 |
| RsaNI | GTAC | 3 cut(s) | 507, 754, 1282 |
| RseI | CAYNNNNRTG | 1 cut(s) | 472 |
| SaqAI | TTAA | 6 cut(s) | 98, 350, 608, 873, 1116, 1125 |
| SatI | GCNGC | 5 cut(s) | 21, 181, 275, 849, 949 |
| Sau3AI | GATC | 4 cut(s) | 528, 816, 856, 1294 |
| Sau96I | GGNCC | 2 cut(s) | 161, 200 |
| ScaI | AGTACT | 1 cut(s) | 755 |
| SchI | GAGTC | 1 cut(s) | 1127 |
| ScrFI | CCNGG | 3 cut(s) | 495, 760, 928 |
| SduI | GDGCHC | 3 cut(s) | 294, 1003, 1069 |
| SfaNI | GCATC | 9 cut(s) | 126, 225, 288, 422, 486, 799, 918, 1008, 1220 |
| SinI | GGWCC | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 472 |
| SmlI | CTYRAG | 2 cut(s) | 1060, 1304 |
| SmoI | CTYRAG | 2 cut(s) | 1060, 1304 |
| SphI | GCATGC | 1 cut(s) | 741 |
| Sse9I | AATT | 7 cut(s) | 84, 285, 442, 522, 616, 891, 922 |
| SsiI | CCGC | 2 cut(s) | 164, 849 |
| SspMI | CTAG | 3 cut(s) | 204, 1320, 1337 |
| StyD4I | CCNGG | 3 cut(s) | 493, 758, 926 |
| TaaI | ACNGT | 3 cut(s) | 76, 305, 884 |
| TaiI | ACGT | 3 cut(s) | 235, 521, 1143 |
| TaqI | TCGA | 3 cut(s) | 235, 1169, 1326 |
| TasI | AATT | 7 cut(s) | 84, 285, 442, 522, 616, 891, 922 |
| TatI | WGTACW | 1 cut(s) | 753 |
| TauI | GCSGC | 1 cut(s) | 851 |
| TfiI | GAWTC | 4 cut(s) | 168, 387, 800, 935 |
| Tru1I | TTAA | 6 cut(s) | 98, 350, 608, 873, 1116, 1125 |
| Tru9I | TTAA | 6 cut(s) | 98, 350, 608, 873, 1116, 1125 |
| TscAI | CASTG | 3 cut(s) | 55, 859, 1097 |
| TseFI | GTSAC | 2 cut(s) | 410, 830 |
| TseI | GCWGC | 4 cut(s) | 20, 180, 274, 948 |
| Tsp45I | GTSAC | 2 cut(s) | 410, 830 |
| TspDTI | ATGAA | 6 cut(s) | 297, 359, 539, 555, 723, 1133 |
| TspRI | CASTG | 3 cut(s) | 55, 859, 1097 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 544 |
| VpaK11BI | GGWCC | 1 cut(s) | 161 |
| XapI | RAATTY | 1 cut(s) | 922 |
| XceI | RCATGY | 2 cut(s) | 216, 741 |
| XspI | CTAG | 3 cut(s) | 204, 1320, 1337 |
| ZrmI | AGTACT | 1 cut(s) | 755 |
| Zsp2I | ATGCAT | 2 cut(s) | 218, 479 |