FvH4_6g41040

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000226
Physical Location & Seq
Reverse (-)
32391690 .. 32394806
3117 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g41040.t1

Sequence Viewer

Length: 3117 bp
ATGGCTCAGCTTCAACATTTCAGTCACCACCATCCATTGATGTTCAAGGAAGAGGCGCAGAAGGATAAACATTGCCGTGCGTGTGGGGACCCGGTGCTTGGTCCTAGCTACAGTTGCAGCCAGTGTTCCAAACTATTCATTCTCCACAAATCATGTGCCGAGCTCCCCCGTGAGATGCATCATCCGATACACCGCAAGCATCCACTTGTTCTCTCATGTATGGACAGGGAGTACACTTGCGATATTTGTTGGAAAACCCATCCCATCAACTTATTCGTTTACAGATGTGAGCCATGTGCATTCGAACTTCATCTCCAATGTGCTTCTGAATTGAGCAACACAAAATACTTAGAGCACTTCAGTCATGAGCATGCACTGATCATTCAGGAAGATCCGGACAAAAGGAGAGTTTGTCAAGGGTGCAAGGAGGAAGTGGGCGGTCCATGCTATCGTTGTTGCCGAATTCTTTGCTGGTACTATCTCCATAAGTCATGTGCGGAGATGCCCGTTGAGTTTCGTCACCCCATGCATCCCAAACACCCACTTATTCTCAACAAAGATAGAGCAAAACAATACCTTTGTGATGCGTGCGGCCAAGATTGTAGTGGCAAGTTCACTTATAGTTGCTTCCAATGTGACTTCAACCTTGACCCAAAATGTGCTTTCACTAAACATTACTCTCATATCCATCCATTGATGTTTAAGGAAGATGATGCTGCAGCAACAGTATTAGTAGCAGGTCCACCGGTTGTATGCTTTGCGTGTGGGGATCCAGTAGTTGGTCCTAGCTATAGTTGTTACCAGTGCTTATTCGTTCTCCACAAGTCATGTGCGGATCTTCCGCATGAAATGCATCATCCAATACACAACACACACCCACTTGTTCTTCTTTCAGATAGAAACTACTGTTGTGATATTTGTCGCAGATCCCATTCCGGCTTATTCTCTTACAGTTGTAGCCCATGTAACTATGAGCTTGACATCCAATGTGCTTCTGACTTGAGCAACATAAAATACATAGAGCACTTTAGTCATGAGCATGCGCTGATCTTTGTAGAAGATCCGAAAAGGCGAGAGGAAGGGTTACCAGTTGTTTGTCAAGGGTGCCAGGAGGATGTGTCGGGTCCGGGCTATTGTTGCAGCCGTTTTCTCTGTCACTACACTCTCCACAAGTCATGTGCGGAGCTTCCCTCGGAGTTTCATCACCCGATGCATACCCAACATTCACTTGTTCTTAACAAAGATAGAGGACGAGGATTCCTGTGTGATGCGTGTGACCAAGATTGCAGCCGCAGGTTCACTTATAGTTGCTGCCAGTGTGACTTCAGCCTTGACTCAAAATGTGCTTTCAATTGGACCGGTTTTAAACATTTCAGTCACGAGCATCCGTTATTGTTCGAGAGAGAGCCGAAAAAGAAATACTTTGGTCCGCTGTTCTGCGATGGCTGCCAGGATCCAATACTTGGTCCTAGTTACACGTGCATCAATACCTTCCGGCGTCGCAAATGTAGCTTCAATCTTCATAAAACATGTGCAGAGCTACCCCATGAAATTGAGCACCCGATGCACCGTCAACACCCACTTCTTCTCCACAACATTCTTCCGGATATCAAGCAGGTACGTCGCCTTTGTAATGTTTGCAACAAACCTGGCAGATTCCTCTACTGCTGTTCCATATGTGACTTCAACCTTCACCTCAAGTGTGGCTCAAATTGGAAAACTATTCTTGCTAACGAGTCTCACGAGCATCAGTTCACAGTCCTCGGGAGGAAAATGTTTGACCACGTTAATTGTGACGTTTGTGGTGAGTATTGGACTACCGGGGTCTACTACATGTGTAGCATTTGCCAGCTCTTCGTCGATAAGGAATGTGCTTCATTACCACGCAGCATCAAAAAACCTGACCATCAACACCACCTAAAGCTGACCTGGTTCCTTGACAACATCTGCCCCAACAACCTGTCGTGCAAAGTGTGCTCCATAAGCATTGATAAATGTCGCGCTGCTTATTGTTGTGGTGAATGTAGCAGTTATGTCGCCCATGTCGCATGTACAACAGCTGAGTACTCTCGAGAAGATAGTTTTTTAGACACTGCCCTGAATGATGATGAGTCTGATGATGCTCTAGAGATCACACACTTCAGTCACCCACATCCATTAGCCGCTAATGATCCTTGTGAGGAAGTTAAAGATGAGCACAGACTAATTAGCTGTGAGGGATGCATCCGCCCCATAAATGCCACCAAAGAATCCTTTTATAGCTGCACTAAACAAGAAGATGAGTTGTGTAGTTTCTTTCTCCATAAGGTATGTGCTCAATTACCTAAAAAAATGTTTCTCCCTCTACTTCACCAACACCAGTTAATGCTCCTCTCAAGGGCACCTTCTGTTGGTGGTGTCTTCCAGTGTTATATGTGTGGTGCTTTTAACCAAGGCTTCACATATACTTGTGAGAAATGTGGCTCACAAAAAGGCGAAACTGTTTTCTTCCTCGACCTTCAGTGCAATGCCTACTGGGATAACAAGGCTCTTATTAAACATGACTCTCATGTTCACCACCTCCTCCTCACAACAGAATGGGACGACGTCCATTGCAGCAGTTGTGGGTGTAATATATTCTTCTGCTTTAGTTGTAAGAGATGTAAATTTCATCTATGTATTCCATGTGTTAGATTACCTCTTACTGCTAGGCACCGTTACGATGATCATCCTCTCAAGCTCACATATGCTAGCGTATATGATGAGCTCGGTTACTACTGTCAAATATGCGAAGGAACTCGAGATCCAACACAATGGTTCTACCGCTGCAACGATTGTGACTTTGATTGCCATGCTCATTGCATTGTGGGGAGTTATCCACAAGTCAAGTTAGGGAGTACTTGCAAGCACGAAGCTCATGCTCAACACCTCGTCACCCTTGTTGATAAGGCCAGAAGCCCCATTCGGTTCGATAAGAGAGAAAACATTCTTCCTTGCCTGAAATGTGGAGAGCCTTGTGTAGGATTGGTGTTTGAATGTGGGGATTGCATTATAAATATCCACCGAGAAGGATTTTGTCAGGTAACAGCTTTGGAGAGTTCTGCCAATCAAGCCTCCAAAGAAGAGACAAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

1039

Amino Acids

119.26

Weight (kDa)

6.55

Isoelectric Point (pI)

49.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 7 - 53 3.5e-09 C1 domain
C1_2 PF03107 63 - 108 1.2e-06 C1 domain
C1_2 PF03107 176 - 221 2.6e-10 C1 domain
C1_2 PF03107 227 - 278 2.1e-06 C1 domain
C1_2 PF03107 288 - 331 8.2e-08 C1 domain
C1_2 PF03107 343 - 394 2.9e-06 C1 domain
C1_2 PF03107 404 - 449 2.6e-07 C1 domain
C1_2 PF03107 458 - 512 5.3e-06 C1 domain
C1_2 PF03107 522 - 568 2.9e-08 C1 domain
C1_2 PF03107 580 - 625 1.1e-06 C1 domain
C1_2 PF03107 714 - 772 7.5e-06 C1 domain
C1_2 PF03107 899 - 948 4.2e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3032
AatII GACGTC 1 cut(s) 2589
Acc36I ACCTGC 3 cut(s) 728, 1284, 1606
AccB1I GGYRCC 3 cut(s) 1104, 2380, 2691
AccB7I CCANNNNNTGG 2 cut(s) 779, 1463
AccI GTMKAC 1 cut(s) 1827
AccII CGCG 1 cut(s) 2001
AccIII TCCGGA 2 cut(s) 394, 1603
AcoI YGGCCR 1 cut(s) 592
AcsI RAATTY 2 cut(s) 462, 2645
AcuI CTGAAG 4 cut(s) 343, 1309, 2125, 2483
AcvI CACGTG 1 cut(s) 1479
AcyI GRCGYC 2 cut(s) 1498, 2586
AfaI GTAC 6 cut(s) 233, 476, 1620, 2053, 2066, 2878
AfiI CCNNNNNNNGG 6 cut(s) 98, 779, 1463, 2377, 2390, 2999
AflIII ACRYGT 3 cut(s) 1476, 1529, 1833
AgeI ACCGGT 2 cut(s) 745, 1358
AgsI TTSAA 7 cut(s) 14, 46, 643, 1351, 1516, 1687, 3014
AjnI CCWGG 4 cut(s) 1107, 1449, 1648, 1928
AloI GAACNNNNNNTCC 4 cut(s) 297, 329, 2767, 2799
Alw21I GWGCWC 8 cut(s) 165, 357, 1026, 1560, 1979, 2199, 2317, 2748
Alw26I GTCTC 2 cut(s) 1743, 3098
Ama87I CYCGRG 3 cut(s) 1763, 2070, 2778
Aor13HI TCCGGA 2 cut(s) 394, 1603
AoxI GGCC 2 cut(s) 592, 2928
ApoI RAATTY 2 cut(s) 462, 2645
AsiGI ACCGGT 2 cut(s) 745, 1358
Asp700I GAANNNNTTC 1 cut(s) 2964
AspLEI GCGC 3 cut(s) 58, 1045, 2003
AspS9I GGNCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
AsuC2I CCSGG 3 cut(s) 92, 1128, 1822
AsuII TTCGAA 1 cut(s) 303
AsuNHI GCTAGC 1 cut(s) 2729
AvaI CYCGRG 3 cut(s) 1763, 2070, 2778
AvaII GGWCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
BaeGI GKGCMC 1 cut(s) 2383
BamHI GGATCC 2 cut(s) 769, 1453
BanI GGYRCC 3 cut(s) 1104, 2380, 2691
BanII GRGCYC 2 cut(s) 165, 2748
BauI CACGAG 2 cut(s) 1379, 1742
BbrPI CACGTG 1 cut(s) 1479
BbsI GAAGAC 1 cut(s) 2392
Bbv12I GWGCWC 8 cut(s) 165, 357, 1026, 1560, 1979, 2199, 2317, 2748
BccI CCATC 6 cut(s) 39, 267, 272, 696, 1436, 1914
BceAI ACGGC 2 cut(s) 60, 1128
BcgI CGANNNNNNTGC 8 cut(s) 450, 484, 1604, 1638, 2017, 2051, 2879, 2913
BciT130I CCWGG 4 cut(s) 1109, 1451, 1650, 1930
BclI TGATCA 2 cut(s) 378, 2704
BcnI CCSGG 3 cut(s) 92, 1128, 1822
BcoDI GTCTC 2 cut(s) 1743, 3098
BfaI CTAG 6 cut(s) 105, 786, 1470, 2126, 2688, 2730
BfmI CTRYAG 3 cut(s) 109, 717, 790
BfuAI ACCTGC 3 cut(s) 728, 1284, 1606
BlpI GCTNAGC 1 cut(s) 6
BmcAI AGTACT 2 cut(s) 2066, 2878
Bme1390I CCNGG 7 cut(s) 92, 1109, 1128, 1451, 1650, 1822, 1930
Bme18I GGWCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
BmeT110I CYCGRG 3 cut(s) 1763, 2070, 2778
BmgT120I GGNCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
BmiI GGNNCC 9 cut(s) 89, 90, 771, 1106, 1125, 1455, 1934, 2382, 2693
BmrFI CCNGG 7 cut(s) 92, 1109, 1128, 1451, 1650, 1822, 1930
BmrI ACTGGG 1 cut(s) 2524
BmtI GCTAGC 1 cut(s) 2733
BmuI ACTGGG 1 cut(s) 2524
BpiI GAAGAC 1 cut(s) 2392
BplI GAGNNNNNCTC 2 cut(s) 1175, 1207
Bpu1102I GCTNAGC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 303
BpuEI CTTGAG 4 cut(s) 1021, 1682, 2359, 2699
BpuMI CCSGG 3 cut(s) 92, 1128, 1822
BsaAI YACGTR 1 cut(s) 1479
BsaBI GATNNNNATC 1 cut(s) 2706
BsaHI GRCGYC 2 cut(s) 1498, 2586
BsaJI CCNNGG 4 cut(s) 1191, 1762, 1821, 2431
BsaWI WCCGGW 4 cut(s) 394, 745, 1358, 1603
BsaXI ACNNNNNCTCC 8 cut(s) 297, 327, 397, 427, 1103, 1133, 1572, 1602
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 779, 1463, 2377, 2390, 2999
Bse118I RCCGGY 2 cut(s) 745, 1358
Bse1I ACTGG 8 cut(s) 121, 773, 802, 1088, 1315, 2359, 2404, 2519
Bse3DI GCAATG 4 cut(s) 70, 2512, 2590, 2836
Bse8I GATNNNNATC 1 cut(s) 2706
BseAI TCCGGA 2 cut(s) 394, 1603
BseBI CCWGG 4 cut(s) 1109, 1451, 1650, 1930
BseDI CCNNGG 4 cut(s) 1191, 1762, 1821, 2431
BseJI GATNNNNATC 1 cut(s) 2706
BseLI CCNNNNNNNGG 6 cut(s) 98, 779, 1463, 2377, 2390, 2999
BseMI GCAATG 4 cut(s) 70, 2512, 2590, 2836
BseMII CTCAG 2 cut(s) 20, 2052
BseNI ACTGG 8 cut(s) 121, 773, 802, 1088, 1315, 2359, 2404, 2519
BseRI GAGGAG 3 cut(s) 2360, 2552, 2555
BseSI GKGCMC 1 cut(s) 2383
BsgI GTGCAG 2 cut(s) 1554, 2248
Bsh1236I CGCG 1 cut(s) 2001
BshFI GGCC 2 cut(s) 594, 2930
BshNI GGYRCC 3 cut(s) 1104, 2380, 2691
BshTI ACCGGT 2 cut(s) 745, 1358
BsiHKAI GWGCWC 8 cut(s) 165, 357, 1026, 1560, 1979, 2199, 2317, 2748
BsiHKCI CYCGRG 3 cut(s) 1763, 2070, 2778
BsiSI CCGG 9 cut(s) 92, 395, 746, 936, 1127, 1359, 1495, 1604, 1821
BslFI GGGAC 2 cut(s) 101, 2594
BslI CCNNNNNNNGG 6 cut(s) 98, 779, 1463, 2377, 2390, 2999
BsmAI GTCTC 2 cut(s) 1743, 3098
BsmFI GGGAC 2 cut(s) 101, 2594
BsmI GAATGC 1 cut(s) 299
BsnI GGCC 2 cut(s) 594, 2930
BsoBI CYCGRG 3 cut(s) 1763, 2070, 2778
Bsp119I TTCGAA 1 cut(s) 303
Bsp1286I GDGCHC 9 cut(s) 165, 357, 1026, 1560, 1979, 2199, 2317, 2383, 2748
Bsp13I TCCGGA 2 cut(s) 394, 1603
Bsp1407I TGTACA 1 cut(s) 2051
Bsp1720I GCTNAGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 594, 2930
BspCNI CTCAG 2 cut(s) 19, 2053
BspEI TCCGGA 2 cut(s) 394, 1603
BspFNI CGCG 1 cut(s) 2001
BspHI TCATGA 2 cut(s) 364, 1033
BspLI GGNNCC 9 cut(s) 89, 90, 771, 1106, 1125, 1455, 1934, 2382, 2693
BspMAI CTGCAG 1 cut(s) 721
BspMI ACCTGC 3 cut(s) 728, 1284, 1606
BspOI GCTAGC 1 cut(s) 2733
BspQI GCTCTTC 1 cut(s) 1859
BspT104I TTCGAA 1 cut(s) 303
BspT107I GGYRCC 3 cut(s) 1104, 2380, 2691
BsrDI GCAATG 4 cut(s) 70, 2512, 2590, 2836
BsrFI RCCGGY 2 cut(s) 745, 1358
BsrGI TGTACA 1 cut(s) 2051
BsrI ACTGG 8 cut(s) 121, 773, 802, 1088, 1315, 2359, 2404, 2519
BssAI RCCGGY 2 cut(s) 745, 1358
BssECI CCNNGG 4 cut(s) 1191, 1762, 1821, 2431
BssNI GRCGYC 2 cut(s) 1498, 2586
BssSI CACGAG 2 cut(s) 1379, 1742
BssT1I CCWWGG 1 cut(s) 2431
Bst2BI CACGAG 2 cut(s) 1379, 1742
Bst2UI CCWGG 4 cut(s) 1109, 1451, 1650, 1930
Bst4CI ACNGT 9 cut(s) 113, 727, 908, 953, 1571, 1759, 2482, 2696, 2759
Bst6I CTCTTC 3 cut(s) 45, 1859, 3096
BstACI GRCGYC 2 cut(s) 1498, 2586
BstAPI GCANNNNNTGC 3 cut(s) 850, 1564, 1974
BstAUI TGTACA 1 cut(s) 2051
BstBAI YACGTR 1 cut(s) 1479
BstBI TTCGAA 1 cut(s) 303
BstC8I GCNNGC 7 cut(s) 197, 372, 589, 1041, 1850, 2731, 2885
BstDEI CTNAG 3 cut(s) 6, 349, 2061
BstEII GGTNACC 1 cut(s) 1083
BstENI CCTNNNNNAGG 1 cut(s) 2997
BstFNI CGCG 1 cut(s) 2001
BstHHI GCGC 3 cut(s) 58, 1045, 2003
BstMAI GTCTC 2 cut(s) 1743, 3098
BstNI CCWGG 4 cut(s) 1109, 1451, 1650, 1930
BstNSI RCATGY 5 cut(s) 374, 1043, 1533, 1837, 2052
BstPI GGTNACC 1 cut(s) 1083
BstSCI CCNGG 7 cut(s) 90, 1107, 1126, 1449, 1648, 1820, 1928
BstSFI CTRYAG 3 cut(s) 109, 717, 790
BstSLI GKGCMC 1 cut(s) 2383
BstUI CGCG 1 cut(s) 2001
BstV2I GAAGAC 1 cut(s) 2392
BstX2I RGATCY 7 cut(s) 391, 769, 835, 926, 1060, 1453, 2782
BstXI CCANNNNNNTGG 1 cut(s) 2793
BstYI RGATCY 7 cut(s) 391, 769, 835, 926, 1060, 1453, 2782
BsuRI GGCC 2 cut(s) 594, 2930
BtgZI GCGATG 1 cut(s) 1455
BtsI GCAGTG 1 cut(s) 2091
BtsIMutI CAGTG 7 cut(s) 128, 374, 809, 1322, 2091, 2411, 2507
BveI ACCTGC 3 cut(s) 728, 1284, 1606
Cac8I GCNNGC 7 cut(s) 197, 372, 589, 1041, 1850, 2731, 2885
CciI TCATGA 2 cut(s) 364, 1033
CfoI GCGC 3 cut(s) 58, 1045, 2003
Cfr10I RCCGGY 2 cut(s) 745, 1358
Cfr13I GGNCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
CseI GACGC 1 cut(s) 1487
CsiI ACCWGGT 1 cut(s) 1928
Csp6I GTAC 6 cut(s) 232, 475, 1619, 2052, 2065, 2877
CspAI ACCGGT 2 cut(s) 745, 1358
CspCI CAANNNNNGTGG 2 cut(s) 1772, 1807
CviQI GTAC 6 cut(s) 232, 475, 1619, 2052, 2065, 2877
DdeI CTNAG 3 cut(s) 6, 349, 2061
DraI TTTAAA 1 cut(s) 1366
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 3 cut(s) 45, 1859, 3096
EarI CTCTTC 3 cut(s) 45, 1859, 3096
EciI GGCGGA 1 cut(s) 2216
Ecl136II GAGCTC 2 cut(s) 163, 2746
Eco130I CCWWGG 1 cut(s) 2431
Eco24I GRGCYC 2 cut(s) 165, 2748
Eco32I GATATC 1 cut(s) 1609
Eco47I GGWCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
Eco53kI GAGCTC 2 cut(s) 163, 2746
Eco57I CTGAAG 4 cut(s) 343, 1309, 2125, 2483
Eco72I CACGTG 1 cut(s) 1479
Eco88I CYCGRG 3 cut(s) 1763, 2070, 2778
Eco91I GGTNACC 1 cut(s) 1083
EcoICRI GAGCTC 2 cut(s) 163, 2746
EcoNI CCTNNNNNAGG 1 cut(s) 2997
EcoO109I RGGNCCY 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 1083
EcoRI GAATTC 1 cut(s) 462
EcoRII CCWGG 4 cut(s) 1107, 1449, 1648, 1928
EcoRV GATATC 1 cut(s) 1609
EcoT14I CCWWGG 1 cut(s) 2431
EcoT22I ATGCAT 5 cut(s) 180, 531, 855, 1215, 2225
EcoT38I GRGCYC 2 cut(s) 165, 2748
ErhI CCWWGG 1 cut(s) 2431
FalI AAGNNNNNCTT 4 cut(s) 1406, 1438, 2368, 2400
FaqI GGGAC 2 cut(s) 101, 2594
FauNDI CATATG 2 cut(s) 1676, 2725
FbaI TGATCA 2 cut(s) 378, 2704
FblI GTMKAC 1 cut(s) 1827
FriOI GRGCYC 2 cut(s) 165, 2748
FspBI CTAG 6 cut(s) 105, 786, 1470, 2126, 2688, 2730
GlaI GCGC 3 cut(s) 57, 1044, 2002
HaeIII GGCC 2 cut(s) 594, 2930
HapII CCGG 9 cut(s) 92, 395, 746, 936, 1127, 1359, 1495, 1604, 1821
HgaI GACGC 1 cut(s) 1487
HhaI GCGC 3 cut(s) 58, 1045, 2003
Hin1I GRCGYC 2 cut(s) 1498, 2586
Hin6I GCGC 3 cut(s) 56, 1043, 2001
HinP1I GCGC 3 cut(s) 56, 1043, 2001
HincII GTYRAC 1 cut(s) 1574
HindII GTYRAC 1 cut(s) 1574
HinfI GANTC 7 cut(s) 1257, 1334, 1656, 1736, 2111, 2249, 2543
HpaII CCGG 9 cut(s) 92, 395, 746, 936, 1127, 1359, 1495, 1604, 1821
Hpy166II GTNNAC 9 cut(s) 234, 280, 615, 743, 1299, 1574, 1755, 1828, 2554
Hpy188I TCNGA 7 cut(s) 186, 328, 895, 997, 1065, 1195, 2116
Hpy8I GTNNAC 9 cut(s) 234, 280, 615, 743, 1299, 1574, 1755, 1828, 2554
Hpy99I CGWCG 4 cut(s) 1503, 1626, 1862, 2588
HpyAV CCTTC 8 cut(s) 55, 1073, 1501, 1700, 2394, 2507, 2765, 3041
HpyCH4III ACNGT 9 cut(s) 113, 727, 908, 953, 1571, 1759, 2482, 2696, 2759
HpyCH4IV ACGT 5 cut(s) 1478, 1621, 1785, 1797, 2586
HpyF3I CTNAG 3 cut(s) 6, 349, 2061
HpySE526I ACGT 5 cut(s) 1478, 1621, 1785, 1797, 2586
Hsp92I GRCGYC 2 cut(s) 1498, 2586
HspAI GCGC 3 cut(s) 56, 1043, 2001
KflI GGGWCCC 1 cut(s) 88
Kpn2I TCCGGA 2 cut(s) 394, 1603
Ksp22I TGATCA 2 cut(s) 378, 2704
LguI GCTCTTC 1 cut(s) 1859
LmnI GCTCC 4 cut(s) 168, 1183, 1982, 2373
MabI ACCWGGT 1 cut(s) 1928
MaeI CTAG 6 cut(s) 105, 786, 1470, 2126, 2688, 2730
MaeII ACGT 5 cut(s) 1478, 1621, 1785, 1797, 2586
MfeI CAATTG 1 cut(s) 1351
MflI RGATCY 7 cut(s) 391, 769, 835, 926, 1060, 1453, 2782
MhlI GDGCHC 9 cut(s) 165, 357, 1026, 1560, 1979, 2199, 2317, 2383, 2748
MluCI AATT 9 cut(s) 329, 462, 1351, 1551, 1711, 1789, 2205, 2318, 2645
MlyI GAGTC 4 cut(s) 1328, 1745, 2120, 2537
MmeI TCCRAC 2 cut(s) 230, 2810
Mph1103I ATGCAT 5 cut(s) 180, 531, 855, 1215, 2225
MroI TCCGGA 2 cut(s) 394, 1603
MroXI GAANNNNTTC 1 cut(s) 2964
MseI TTAA 8 cut(s) 702, 1236, 1365, 1788, 2187, 2363, 2427, 2535
MslI CAYNNNNRTG 3 cut(s) 75, 369, 1038
MspA1I CMGCKG 3 cut(s) 1432, 2060, 2805
MspI CCGG 9 cut(s) 92, 395, 746, 936, 1127, 1359, 1495, 1604, 1821
MspR9I CCNGG 7 cut(s) 92, 1109, 1128, 1451, 1650, 1822, 1930
MunI CAATTG 1 cut(s) 1351
Mva1269I GAATGC 1 cut(s) 299
MvaI CCWGG 4 cut(s) 1109, 1451, 1650, 1930
MvnI CGCG 1 cut(s) 2001
NciI CCSGG 3 cut(s) 92, 1128, 1822
NdeI CATATG 2 cut(s) 1676, 2725
NheI GCTAGC 1 cut(s) 2729
NlaIV GGNNCC 9 cut(s) 89, 90, 771, 1106, 1125, 1455, 1934, 2382, 2693
NmeAIII GCCGAG 1 cut(s) 184
NsiI ATGCAT 5 cut(s) 180, 531, 855, 1215, 2225
NspI RCATGY 5 cut(s) 374, 1043, 1533, 1837, 2052
NspV TTCGAA 1 cut(s) 303
PaeI GCATGC 2 cut(s) 374, 1043
PaeR7I CTCGAG 2 cut(s) 2070, 2778
PagI TCATGA 2 cut(s) 364, 1033
PciI ACATGT 2 cut(s) 1529, 1833
PciSI GCTCTTC 1 cut(s) 1859
PcsI WCGNNNNNNNCGW 2 cut(s) 457, 1740
PctI GAATGC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 2964
PfeI GAWTC 3 cut(s) 1257, 1656, 2249
PflFI GACNNNGTC 1 cut(s) 2585
PflMI CCANNNNNTGG 2 cut(s) 779, 1463
PinAI ACCGGT 2 cut(s) 745, 1358
PleI GAGTC 4 cut(s) 1328, 1744, 2119, 2537
PmaCI CACGTG 1 cut(s) 1479
PmlI CACGTG 1 cut(s) 1479
PpsI GAGTC 4 cut(s) 1328, 1744, 2119, 2537
Ppu21I YACGTR 1 cut(s) 1479
PpuMI RGGWCCY 1 cut(s) 88
PscI ACATGT 2 cut(s) 1529, 1833
PsiI TTATAA 1 cut(s) 3032
Psp124BI GAGCTC 2 cut(s) 165, 2748
Psp5II RGGWCCY 1 cut(s) 88
Psp6I CCWGG 4 cut(s) 1107, 1449, 1648, 1928
PspCI CACGTG 1 cut(s) 1479
PspEI GGTNACC 1 cut(s) 1083
PspGI CCWGG 4 cut(s) 1107, 1449, 1648, 1928
PspN4I GGNNCC 9 cut(s) 89, 90, 771, 1106, 1125, 1455, 1934, 2382, 2693
PspPI GGNCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
PspPPI RGGWCCY 1 cut(s) 88
PstI CTGCAG 1 cut(s) 721
PsuI RGATCY 7 cut(s) 391, 769, 835, 926, 1060, 1453, 2782
PsyI GACNNNGTC 1 cut(s) 2585
PvuII CAGCTG 1 cut(s) 2060
RsaI GTAC 6 cut(s) 233, 476, 1620, 2053, 2066, 2878
RsaNI GTAC 6 cut(s) 232, 475, 1619, 2052, 2065, 2877
RseI CAYNNNNRTG 3 cut(s) 75, 369, 1038
SacI GAGCTC 2 cut(s) 165, 2748
SapI GCTCTTC 1 cut(s) 1859
SaqAI TTAA 8 cut(s) 702, 1236, 1365, 1788, 2187, 2363, 2427, 2535
Sau96I GGNCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
ScaI AGTACT 2 cut(s) 2066, 2878
SchI GAGTC 4 cut(s) 1328, 1745, 2120, 2537
ScrFI CCNGG 7 cut(s) 92, 1109, 1128, 1451, 1650, 1822, 1930
SduI GDGCHC 9 cut(s) 165, 357, 1026, 1560, 1979, 2199, 2317, 2383, 2748
SexAI ACCWGGT 1 cut(s) 1928
SfcI CTRYAG 3 cut(s) 109, 717, 790
Sfr274I CTCGAG 2 cut(s) 2070, 2778
SfuI TTCGAA 1 cut(s) 303
SinI GGWCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
SlaI CTCGAG 2 cut(s) 2070, 2778
SmiMI CAYNNNNRTG 3 cut(s) 75, 369, 1038
SmlI CTYRAG 6 cut(s) 1000, 1697, 2070, 2374, 2714, 2778
SmoI CTYRAG 6 cut(s) 1000, 1697, 2070, 2374, 2714, 2778
SphI GCATGC 2 cut(s) 374, 1043
Sse9I AATT 9 cut(s) 329, 462, 1351, 1551, 1711, 1789, 2205, 2318, 2645
SspMI CTAG 6 cut(s) 105, 786, 1470, 2126, 2688, 2730
SstI GAGCTC 2 cut(s) 165, 2748
StyD4I CCNGG 7 cut(s) 90, 1107, 1126, 1449, 1648, 1820, 1928
StyI CCWWGG 1 cut(s) 2431
TaaI ACNGT 9 cut(s) 113, 727, 908, 953, 1571, 1759, 2482, 2696, 2759
TaiI ACGT 5 cut(s) 1481, 1624, 1788, 1800, 2589
TaqI TCGA 7 cut(s) 303, 1398, 1860, 2071, 2493, 2779, 2949
TasI AATT 9 cut(s) 329, 462, 1351, 1551, 1711, 1789, 2205, 2318, 2645
TatI WGTACW 4 cut(s) 231, 2051, 2064, 2876
TauI GCSGC 3 cut(s) 594, 1293, 2165
TfiI GAWTC 3 cut(s) 1257, 1656, 2249
Tru1I TTAA 8 cut(s) 702, 1236, 1365, 1788, 2187, 2363, 2427, 2535
Tru9I TTAA 8 cut(s) 702, 1236, 1365, 1788, 2187, 2363, 2427, 2535
TscAI CASTG 7 cut(s) 128, 381, 809, 1322, 2098, 2411, 2507
TspDTI ATGAA 8 cut(s) 127, 299, 861, 1190, 1511, 1563, 1866, 2639
TspGWI ACGGA 1 cut(s) 1377
TspRI CASTG 7 cut(s) 128, 381, 809, 1322, 2098, 2411, 2507
Tth111I GACNNNGTC 1 cut(s) 2585
Van91I CCANNNNNTGG 2 cut(s) 779, 1463
VpaK11BI GGWCC 9 cut(s) 88, 101, 440, 740, 782, 1124, 1356, 1427, 1466
XagI CCTNNNNNAGG 1 cut(s) 2997
XapI RAATTY 2 cut(s) 462, 2645
XbaI TCTAGA 1 cut(s) 2125
XceI RCATGY 5 cut(s) 374, 1043, 1533, 1837, 2052
XcmI CCANNNNNNNNNTGG 1 cut(s) 602
XhoI CTCGAG 2 cut(s) 2070, 2778
XmiI GTMKAC 1 cut(s) 1827
XmnI GAANNNNTTC 1 cut(s) 2964
XspI CTAG 6 cut(s) 105, 786, 1470, 2126, 2688, 2730
ZraI GACGTC 1 cut(s) 2587
ZrmI AGTACT 2 cut(s) 2066, 2878
Zsp2I ATGCAT 5 cut(s) 180, 531, 855, 1215, 2225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.