FvH4_6g40980

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000226
Physical Location & Seq
Reverse (-)
32374494 .. 32378736
4243 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g40980.t1

Sequence Viewer

Length: 3525 bp
ATGGATCAGCTTCAACATTTCAGTCACGGCCATCCATTGATGTTCAAGGAAGAGGCGCAGAAGGATAAAGATGGTAGAGCAGTAGTTTGCCGTGCGTGTGGGGACCCGGTGCTTGGTCCAAGCTACAGTTGCGGCCAGTGCTCCCAATTGTTTATTCTCCACAAGTCATGTGCGTATCTTCCGCGTGAGATGCATCACCCAATACATAACAAACACCCACTTATTCTTCTTCCAAACATAAATTACCGTTGTGATATTTGTCGCAGATCCCATTCCGGCTTATTCTCTTACAGATGTAGGCCATGTAACTATGATCTTGACATCCAATGTGCTTCTGACTTAAGCAACATAAAATACATAGAGCACTTTAGTCATGAGCATGCGCTGATCTTTGTGGAAGATCCGAAAAGGCGAGAGAAAGGGTTACCAGTTGTTTGTCAAGGGTGCCAGGAGGATGTGTCGGGTCCAGGCTATTGTTGCAGCCGTTTTCTCTGTCACTACACTCTCCACAAGTCATGTGCCGAGCTCCCCCGTGAGATGCATCATCCGATACACCGCAAGCATCCACTTGTTCTCTCATTTATGTACGGGGGCTACACTTGCGATATTTGTTGGAAAACCCATTACAACGACTTGTTCGCTTACAGATGTGAGCCATGTAGATTCGAACTTCATCTCCAATGTGCGTCTGATTTGAGCAACATAAAATACTTAGAGCACTTCAGTCATGAGCATGCACTGATCATTGATGAACATTCGAAAAGAGACTACAGAAGGAGAGTTTGTCAAGGGTGCAAGGAGGAAGTGTTGGATCCAAGATATCGTTGCAGTTGCATTCTTTGCTGGTACTATCTCCATAAGTCATGTGCGGAGATGCCCGTTGAGATTCATCACCCCATGCATCCCAAACACCCACTCATTCTCAACAAAGCTGGAGCAAAACAATACCTTTGTGATGCGTGCGGCCAAGATTGTAGTGGCAAGTTCACTTACAGTTGCTTCCAGTGTGACTTGAACCTTCATCCTGAATGTACTTCCATTTATCCTAACTTTATACGTTTCAGTCACGTCCATCCGTTGATGTTTAACGAAGGGGAGCAGAAATATGAAGATGGTGCAGCAGCAACAGTAGCAGTAGCATGTCCGCCAGTTGTATGCTCTGCGTGTGGGGATCCAATACATGGTCCTAGCTACAGTTGCAACCAGTGCTCCAAATTGTTCATTCTCCACAAATCATGTGGGGATCTCCCGCGAAAGATGTATCACACAATACACAACAAACACCCACTTGTTCTTCTTTCAGATAGAAACTACTGCTGTGATATTTGTCGCAGATCCCATTCCGGCTTATTCTCTTACAGATGTAGCCCATGTAAGTATGAGCTTGACATCCAATGTGTTTCTGACTTGAGCAACATAAAATACATAGAGCACTTTAGTCATGAGCATGCTCTGATCTTTGTGGAAGATCCGAAAAGGCGAGAGGAAGGGTTACCAGTTGTTTGTCAAGGGTGCCAGGAGGATGTGTCGGGTCCAGGCTATTGTTGCAGCCGTTTTCTCTGTCACTACACTCTCCACAAGTCATGTGCAGAGCTTCCCTCAGAGTTTCGTCACCCGATGCATACCGAGCAACATCCACTTGTTCTAAACAAAGATGGACGAGGATTCCAATGTGATTTGTGTGACCAAGATTGCAGCCGCAGGTTCACTTATAGTTGCTTCCAGTGTGACTTCAACCTCGACTCAAAATGTGCTTTCAAGTGGACCAGTTTTAAACATTTCAGTCACGAGCATCCATTGTTCGAGAGAGAGCCAAAAAAGTACTTTGGTCTGCTGTTCTGCGATGGCTGCCAAGATCCAATACTAACTGGTCCTAGTTACACATGCATCAATACCTTCCGCCGTCGCAAATGTGGCTTCAATCTGCATAAAAAATGTTACGAGCTGCCCCATGAAATTGAGCACCCGATGCACTGTAAGCACCCACTTTTTCTCCACAACATTCTTCCGGATATCAAGCGGGTACGTCGCCTTTGTAATGTTTGCAACAAACCTGGCAGATTACTCTACTGCTGTTCCATATGTGACTTCAACCTTCACCTCAAGTGTAGCTCAAATTGGCAAAGTATTCTTGCTAATGACTCTCACGAGCATCAGTTCACAGTCCTCTGGAAGAAAATGTCTGACTTCCACGTTAAATGTGAAGTTTGTGGTGACGACTGGACTGCCACGGTTTACTTCATGTGTAGCATTTGCCAGCTCTTGGTCCATAAGGAATGTGCTTCATTACCACGCAGCATCAAAAAACCTGAGCACCAACACCAACTGAAGCTGACCTGGTTCCTTGACAACATCTGCCCCAACAACCTGTCATGCAAAGTGTGCTCCTTAAGCATTGATAAATGTCGCGCTGCTTATCGTTGCGGTGAATGTATCAATTATGTTTCCCATGTCGCATGTACAACAGCTGAGTACTCTCGAGAAGATAGTTTTGTGGACATTGTCCTGAATGAAAATGGGTTTGATGATGCTCTAGAGATCACACACTTCAGTCACCCACATCCATTAGCCGCTAATGATCCTTGTGAGGAAGTTAAAGATGAGCACATACTAATTACCTGTGAGGGATGCATCCGCCCCATAACTGCCACCAAAGAATCCTTTTATAGCTGCACCAAACAAGAAGATGAGTTGTGTAGTTTCTTTCTCCATAAGGTATGTGCTCAATTACCTAAAAAGAAGCGTCTCCCTCTACTTCACCAACACCAGTTCACGCTCCTCTCAAGGGCACCTTCTGTTGGTGGTGTCTTCCAGTGTTATATGTGTGGTGCTTTTAACCAAGGCTTCACATATACTTGTGAGGAATGTGCCTCACAAAAAGGAGAAACAGTTTTCTTCCTCGACCTTCAGTGCAATGCCTACTGGGATAACAAGGCTCTTATTAAACATGACTCTCATGTTCACCGCCTCCTCCTCGACACAGAATGGGACAACGTCCATTGCAGCAGTTGCGGGTGTAATATATTCTTCTGCTTTAGTTGTAAGAGATGTGAATTTCGTCTCTGTATTCCATGTGTTAGATTACCTCTTACTGCTAGGCACCGTTACGACGATCATCCTCTCAAGCTCACATATGCTAGTGTCTACGATGAGTTGGGTTACTACTGTCAAATATGCGAAGGAACTCGAGATCCAACACAATGGTTCTACCGCTGCAACGATTGTGACTTTGATTGCCATGCTCATTGCATTGTGGGGAGGTATCCACAAGTCAAGTTAGGGAGTACTTACAAGCACGAAGCTCATGCTCAACACCTCGTCGCCCTTGTTGATAAGGCCAGAAGCCCCATTCGGTTCGATAAGAGAGAAAACATTCTTCCTTGCCTGAAATGTGGAGAGCCTTGTGTAGGATTGGTGTATGAATGTAGGGAGTGCAATATAAATATCCACCGAGAAGGATTTTGTCAGGTAACAGCTTTGGAGAGTTCTACTAATCAAGCCTCCAAAGAAGAGCCAAGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

1175

Amino Acids

135.79

Weight (kDa)

7.04

Isoelectric Point (pI)

53.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 7 - 58 1.2e-07 C1 domain
C1_2 PF03107 68 - 111 1.4e-08 C1 domain
C1_2 PF03107 123 - 174 3.7e-06 C1 domain
C1_2 PF03107 184 - 229 5.1e-08 C1 domain
C1_2 PF03107 300 - 344 7.4e-09 C1 domain
C1_2 PF03107 425 - 467 1.9e-06 C1 domain
C1_2 PF03107 479 - 530 3.3e-06 C1 domain
C1_2 PF03107 543 - 585 1.5e-07 C1 domain
C1_2 PF03107 658 - 703 1.7e-06 C1 domain
C1_2 PF03107 771 - 820 6.7e-06 C1 domain
C1_2 PF03107 850 - 908 3.4e-06 C1 domain
C1_2 PF03107 1035 - 1084 4.9e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1692
AccB1I GGYRCC 4 cut(s) 444, 1512, 2788, 3099
AccB7I CCANNNNNTGG 2 cut(s) 1181, 2263
AccI GTMKAC 1 cut(s) 3144
AccII CGCG 3 cut(s) 184, 1252, 2409
AccIII TCCGGA 1 cut(s) 2008
AcoI YGGCCR 3 cut(s) 28, 133, 964
AcsI RAATTY 1 cut(s) 3053
AcuI CTGAAG 4 cut(s) 706, 2348, 2533, 2891
AfaI GTAC 8 cut(s) 587, 848, 1033, 1823, 2025, 2461, 2474, 3286
AfiI CCNNNNNNNGG 6 cut(s) 113, 1181, 2263, 2785, 2798, 3407
AflII CTTAAG 2 cut(s) 340, 2389
AgsI TTSAA 7 cut(s) 14, 46, 1015, 1735, 1759, 1921, 2092
AjiI CACGTC 1 cut(s) 1069
AjnI CCWGG 6 cut(s) 447, 466, 1515, 1534, 2053, 2336
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AloI GAACNNNNNNTCC 4 cut(s) 660, 692, 3175, 3207
Alw26I GTCTC 3 cut(s) 759, 2750, 3065
Ama87I CYCGRG 2 cut(s) 2478, 3186
Aor13HI TCCGGA 1 cut(s) 2008
AoxI GGCC 5 cut(s) 28, 133, 299, 964, 3336
ApoI RAATTY 1 cut(s) 3053
Asp700I GAANNNNTTC 1 cut(s) 3372
AspLEI GCGC 3 cut(s) 58, 385, 2411
AspS9I GGNCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
AsuC2I CCSGG 1 cut(s) 107
AsuHPI GGTGA 9 cut(s) 188, 884, 1604, 2090, 2225, 2438, 2546, 2750, 2954
AsuII TTCGAA 2 cut(s) 666, 758
AvaI CYCGRG 2 cut(s) 2478, 3186
AvaII GGWCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
BaeGI GKGCMC 1 cut(s) 2791
BamHI GGATCC 2 cut(s) 811, 1171
BanI GGYRCC 4 cut(s) 444, 1512, 2788, 3099
BanII GRGCYC 1 cut(s) 528
BauI CACGAG 2 cut(s) 1787, 2147
BbsI GAAGAC 1 cut(s) 2800
BccI CCATC 6 cut(s) 39, 65, 1080, 1106, 1649, 1838
BceAI ACGGC 5 cut(s) 43, 75, 468, 1536, 1887
BcgI CGANNNNNNTGC 4 cut(s) 2207, 2241, 3287, 3321
BciT130I CCWGG 6 cut(s) 449, 468, 1517, 1536, 2055, 2338
BciVI GTATCC 1 cut(s) 3273
BclI TGATCA 1 cut(s) 741
BcnI CCSGG 1 cut(s) 107
BcoDI GTCTC 3 cut(s) 759, 2750, 3065
BfaI CTAG 5 cut(s) 1188, 1875, 2534, 3096, 3138
BfmI CTRYAG 3 cut(s) 124, 769, 1192
BfrI CTTAAG 2 cut(s) 340, 2389
BfuAI ACCTGC 1 cut(s) 1692
BfuI GTATCC 1 cut(s) 3273
BmcAI AGTACT 3 cut(s) 1823, 2474, 3286
Bme1390I CCNGG 7 cut(s) 107, 449, 468, 1517, 1536, 2055, 2338
Bme18I GGWCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
BmeT110I CYCGRG 2 cut(s) 2478, 3186
BmgBI CACGTC 1 cut(s) 1069
BmgT120I GGNCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
BmrFI CCNGG 7 cut(s) 107, 449, 468, 1517, 1536, 2055, 2338
BmrI ACTGGG 1 cut(s) 2932
BmuI ACTGGG 1 cut(s) 2932
BpiI GAAGAC 1 cut(s) 2800
BplI GAGNNNNNCTC 2 cut(s) 1583, 1615
BpmI CTGGAG 1 cut(s) 954
Bpu10I CCTNAGC 1 cut(s) 2310
Bpu14I TTCGAA 2 cut(s) 666, 758
BpuEI CTTGAG 4 cut(s) 1429, 2087, 2767, 3107
BpuMI CCSGG 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 2229, 2839
BsaWI WCCGGW 1 cut(s) 2008
Bsc4I CCNNNNNNNGG 6 cut(s) 113, 1181, 2263, 2785, 2798, 3407
Bse3DI GCAATG 3 cut(s) 2920, 2998, 3244
BseAI TCCGGA 1 cut(s) 2008
BseBI CCWGG 6 cut(s) 449, 468, 1517, 1536, 2055, 2338
BseDI CCNNGG 2 cut(s) 2229, 2839
BseLI CCNNNNNNNGG 6 cut(s) 113, 1181, 2263, 2785, 2798, 3407
BseMI GCAATG 3 cut(s) 2920, 2998, 3244
BseMII CTCAG 3 cut(s) 1614, 2301, 2460
BseRI GAGGAG 3 cut(s) 2768, 2960, 2963
BseSI GKGCMC 1 cut(s) 2791
BsgI GTGCAG 3 cut(s) 1137, 1608, 2656
Bsh1236I CGCG 3 cut(s) 184, 1252, 2409
BshFI GGCC 5 cut(s) 30, 135, 301, 966, 3338
BshNI GGYRCC 4 cut(s) 444, 1512, 2788, 3099
BsiHKCI CYCGRG 2 cut(s) 2478, 3186
BsiSI CCGG 4 cut(s) 107, 276, 1344, 2009
BslFI GGGAC 2 cut(s) 116, 3002
BslI CCNNNNNNNGG 6 cut(s) 113, 1181, 2263, 2785, 2798, 3407
BsmAI GTCTC 3 cut(s) 759, 2750, 3065
BsmBI CGTCTC 2 cut(s) 2750, 3065
BsmFI GGGAC 2 cut(s) 116, 3002
BsmI GAATGC 1 cut(s) 834
BsnI GGCC 5 cut(s) 30, 135, 301, 966, 3338
BsoBI CYCGRG 2 cut(s) 2478, 3186
Bsp119I TTCGAA 2 cut(s) 666, 758
Bsp13I TCCGGA 1 cut(s) 2008
Bsp1407I TGTACA 1 cut(s) 2459
BspANI GGCC 5 cut(s) 30, 135, 301, 966, 3338
BspCNI CTCAG 3 cut(s) 1613, 2302, 2461
BspEI TCCGGA 1 cut(s) 2008
BspFNI CGCG 3 cut(s) 184, 1252, 2409
BspHI TCATGA 3 cut(s) 373, 727, 1441
BspMI ACCTGC 1 cut(s) 1692
BspQI GCTCTTC 1 cut(s) 3504
BspT104I TTCGAA 2 cut(s) 666, 758
BspT107I GGYRCC 4 cut(s) 444, 1512, 2788, 3099
BspTI CTTAAG 2 cut(s) 340, 2389
BsrDI GCAATG 3 cut(s) 2920, 2998, 3244
BsrGI TGTACA 1 cut(s) 2459
BssECI CCNNGG 2 cut(s) 2229, 2839
BssSI CACGAG 2 cut(s) 1787, 2147
BssT1I CCWWGG 1 cut(s) 2839
Bst2BI CACGAG 2 cut(s) 1787, 2147
Bst2UI CCWGG 6 cut(s) 449, 468, 1517, 1536, 2055, 2338
Bst6I CTCTTC 2 cut(s) 45, 3504
BstAFI CTTAAG 2 cut(s) 340, 2389
BstAPI GCANNNNNTGC 5 cut(s) 840, 1206, 1969, 2382, 3009
BstAUI TGTACA 1 cut(s) 2459
BstBI TTCGAA 2 cut(s) 666, 758
BstC8I GCNNGC 6 cut(s) 381, 560, 735, 961, 1449, 2258
BstDEI CTNAG 4 cut(s) 712, 1600, 2310, 2469
BstDSI CCRYGG 1 cut(s) 2229
BstEII GGTNACC 2 cut(s) 423, 1491
BstENI CCTNNNNNAGG 1 cut(s) 3405
BstFNI CGCG 3 cut(s) 184, 1252, 2409
BstHHI GCGC 3 cut(s) 58, 385, 2411
BstMAI GTCTC 3 cut(s) 759, 2750, 3065
BstNI CCWGG 6 cut(s) 449, 468, 1517, 1536, 2055, 2338
BstNSI RCATGY 6 cut(s) 383, 737, 1143, 1451, 1887, 2460
BstPI GGTNACC 2 cut(s) 423, 1491
BstSCI CCNGG 7 cut(s) 105, 447, 466, 1515, 1534, 2053, 2336
BstSFI CTRYAG 3 cut(s) 124, 769, 1192
BstSLI GKGCMC 1 cut(s) 2791
BstUI CGCG 3 cut(s) 184, 1252, 2409
BstV2I GAAGAC 1 cut(s) 2800
BstX2I RGATCY 9 cut(s) 266, 400, 811, 1171, 1243, 1334, 1468, 1855, 3190
BstXI CCANNNNNNTGG 1 cut(s) 3201
BstYI RGATCY 9 cut(s) 266, 400, 811, 1171, 1243, 1334, 1468, 1855, 3190
BsuI GTATCC 1 cut(s) 3273
BsuRI GGCC 5 cut(s) 30, 135, 301, 966, 3338
BtgI CCRYGG 1 cut(s) 2229
BtgZI GCGATG 1 cut(s) 1857
BtrI CACGTC 1 cut(s) 1069
BtsIMutI CAGTG 8 cut(s) 143, 737, 1010, 1211, 1730, 1972, 2819, 2915
BveI ACCTGC 1 cut(s) 1692
Cac8I GCNNGC 6 cut(s) 381, 560, 735, 961, 1449, 2258
CciI TCATGA 3 cut(s) 373, 727, 1441
CfoI GCGC 3 cut(s) 58, 385, 2411
Cfr13I GGNCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
CseI GACGC 2 cut(s) 675, 2732
CsiI ACCWGGT 1 cut(s) 2336
Csp6I GTAC 8 cut(s) 586, 847, 1032, 1822, 2024, 2460, 2473, 3285
CspCI CAANNNNNGTGG 2 cut(s) 1219, 1254
CviQI GTAC 8 cut(s) 586, 847, 1032, 1822, 2024, 2460, 2473, 3285
DdeI CTNAG 4 cut(s) 712, 1600, 2310, 2469
DraI TTTAAA 1 cut(s) 1774
EaeI YGGCCR 3 cut(s) 28, 133, 964
Eam1104I CTCTTC 2 cut(s) 45, 3504
EarI CTCTTC 2 cut(s) 45, 3504
EciI GGCGGA 3 cut(s) 1134, 1889, 2624
Ecl136II GAGCTC 1 cut(s) 526
Eco130I CCWWGG 1 cut(s) 2839
Eco24I GRGCYC 1 cut(s) 528
Eco32I GATATC 2 cut(s) 821, 2014
Eco47I GGWCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
Eco53kI GAGCTC 1 cut(s) 526
Eco57I CTGAAG 4 cut(s) 706, 2348, 2533, 2891
Eco88I CYCGRG 2 cut(s) 2478, 3186
Eco91I GGTNACC 2 cut(s) 423, 1491
EcoICRI GAGCTC 1 cut(s) 526
EcoNI CCTNNNNNAGG 1 cut(s) 3405
EcoO109I RGGNCCY 1 cut(s) 103
EcoO65I GGTNACC 2 cut(s) 423, 1491
EcoRII CCWGG 6 cut(s) 447, 466, 1515, 1534, 2053, 2336
EcoRV GATATC 2 cut(s) 821, 2014
EcoT14I CCWWGG 1 cut(s) 2839
EcoT22I ATGCAT 6 cut(s) 195, 543, 903, 1623, 1889, 2633
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 1 cut(s) 2839
Esp3I CGTCTC 2 cut(s) 2750, 3065
FalI AAGNNNNNCTT 2 cut(s) 2776, 2808
FaqI GGGAC 2 cut(s) 116, 3002
FauI CCCGC 3 cut(s) 1257, 2013, 3005
FauNDI CATATG 2 cut(s) 2081, 3133
FbaI TGATCA 1 cut(s) 741
FblI GTMKAC 1 cut(s) 3144
FriOI GRGCYC 1 cut(s) 528
FspBI CTAG 5 cut(s) 1188, 1875, 2534, 3096, 3138
GlaI GCGC 3 cut(s) 57, 384, 2410
GsuI CTGGAG 1 cut(s) 954
HaeIII GGCC 5 cut(s) 30, 135, 301, 966, 3338
HapII CCGG 4 cut(s) 107, 276, 1344, 2009
HgaI GACGC 2 cut(s) 675, 2732
HhaI GCGC 3 cut(s) 58, 385, 2411
Hin6I GCGC 3 cut(s) 56, 383, 2409
HinP1I GCGC 3 cut(s) 56, 383, 2409
HinfI GANTC 7 cut(s) 663, 886, 1665, 1742, 2141, 2657, 2951
HpaII CCGG 4 cut(s) 107, 276, 1344, 2009
HphI GGTGA 9 cut(s) 188, 884, 1604, 2090, 2225, 2438, 2546, 2750, 2954
Hpy166II GTNNAC 9 cut(s) 987, 1707, 1764, 2160, 2236, 2497, 2772, 2962, 3145
Hpy8I GTNNAC 9 cut(s) 987, 1707, 1764, 2160, 2236, 2497, 2772, 2962, 3145
Hpy99I CGWCG 4 cut(s) 1908, 2031, 3113, 3323
HpyCH4IV ACGT 5 cut(s) 1057, 1068, 2026, 2193, 2994
HpyF3I CTNAG 4 cut(s) 712, 1600, 2310, 2469
HpySE526I ACGT 5 cut(s) 1057, 1068, 2026, 2193, 2994
HspAI GCGC 3 cut(s) 56, 383, 2409
KflI GGGWCCC 1 cut(s) 103
Kpn2I TCCGGA 1 cut(s) 2008
Ksp22I TGATCA 1 cut(s) 741
LguI GCTCTTC 1 cut(s) 3504
LmnI GCTCC 7 cut(s) 146, 531, 935, 1096, 1214, 2390, 2781
MabI ACCWGGT 1 cut(s) 2336
MaeI CTAG 5 cut(s) 1188, 1875, 2534, 3096, 3138
MaeII ACGT 5 cut(s) 1057, 1068, 2026, 2193, 2994
MfeI CAATTG 1 cut(s) 146
MflI RGATCY 9 cut(s) 266, 400, 811, 1171, 1243, 1334, 1468, 1855, 3190
MluCI AATT 9 cut(s) 146, 241, 1214, 1956, 2116, 2437, 2613, 2726, 3053
MlyI GAGTC 3 cut(s) 1736, 2135, 2945
MmeI TCCRAC 3 cut(s) 593, 789, 3218
Mph1103I ATGCAT 6 cut(s) 195, 543, 903, 1623, 1889, 2633
MroI TCCGGA 1 cut(s) 2008
MroXI GAANNNNTTC 1 cut(s) 3372
MseI TTAA 8 cut(s) 341, 1086, 1773, 2196, 2390, 2595, 2835, 2943
MslI CAYNNNNRTG 3 cut(s) 378, 732, 1446
MspA1I CMGCKG 2 cut(s) 2468, 3213
MspCI CTTAAG 2 cut(s) 340, 2389
MspI CCGG 4 cut(s) 107, 276, 1344, 2009
MspR9I CCNGG 7 cut(s) 107, 449, 468, 1517, 1536, 2055, 2338
MunI CAATTG 1 cut(s) 146
Mva1269I GAATGC 1 cut(s) 834
MvaI CCWGG 6 cut(s) 449, 468, 1517, 1536, 2055, 2338
MvnI CGCG 3 cut(s) 184, 1252, 2409
NciI CCSGG 1 cut(s) 107
NdeI CATATG 2 cut(s) 2081, 3133
NmeAIII GCCGAG 1 cut(s) 547
NsiI ATGCAT 6 cut(s) 195, 543, 903, 1623, 1889, 2633
NspI RCATGY 6 cut(s) 383, 737, 1143, 1451, 1887, 2460
NspV TTCGAA 2 cut(s) 666, 758
PaeI GCATGC 3 cut(s) 383, 737, 1451
PaeR7I CTCGAG 2 cut(s) 2478, 3186
PagI TCATGA 3 cut(s) 373, 727, 1441
PciSI GCTCTTC 1 cut(s) 3504
PctI GAATGC 1 cut(s) 834
PdmI GAANNNNTTC 1 cut(s) 3372
PfeI GAWTC 4 cut(s) 663, 886, 1665, 2657
PflFI GACNNNGTC 2 cut(s) 2501, 2993
PflMI CCANNNNNTGG 2 cut(s) 1181, 2263
PleI GAGTC 3 cut(s) 1736, 2135, 2945
PpsI GAGTC 3 cut(s) 1736, 2135, 2945
PpuMI RGGWCCY 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 528
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 6 cut(s) 447, 466, 1515, 1534, 2053, 2336
PspEI GGTNACC 2 cut(s) 423, 1491
PspGI CCWGG 6 cut(s) 447, 466, 1515, 1534, 2053, 2336
PspPI GGNCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
PspPPI RGGWCCY 1 cut(s) 103
PsuI RGATCY 9 cut(s) 266, 400, 811, 1171, 1243, 1334, 1468, 1855, 3190
PsyI GACNNNGTC 2 cut(s) 2501, 2993
PvuII CAGCTG 1 cut(s) 2468
RsaI GTAC 8 cut(s) 587, 848, 1033, 1823, 2025, 2461, 2474, 3286
RsaNI GTAC 8 cut(s) 586, 847, 1032, 1822, 2024, 2460, 2473, 3285
RseI CAYNNNNRTG 3 cut(s) 378, 732, 1446
SacI GAGCTC 1 cut(s) 528
SapI GCTCTTC 1 cut(s) 3504
SaqAI TTAA 8 cut(s) 341, 1086, 1773, 2196, 2390, 2595, 2835, 2943
Sau96I GGNCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
ScaI AGTACT 3 cut(s) 1823, 2474, 3286
SchI GAGTC 3 cut(s) 1736, 2135, 2945
ScrFI CCNGG 7 cut(s) 107, 449, 468, 1517, 1536, 2055, 2338
SexAI ACCWGGT 1 cut(s) 2336
SfcI CTRYAG 3 cut(s) 124, 769, 1192
Sfr274I CTCGAG 2 cut(s) 2478, 3186
SfuI TTCGAA 2 cut(s) 666, 758
SinI GGWCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
SlaI CTCGAG 2 cut(s) 2478, 3186
SmiMI CAYNNNNRTG 3 cut(s) 378, 732, 1446
SmlI CTYRAG 8 cut(s) 340, 1408, 2102, 2389, 2478, 2782, 3122, 3186
SmoI CTYRAG 8 cut(s) 340, 1408, 2102, 2389, 2478, 2782, 3122, 3186
SphI GCATGC 3 cut(s) 383, 737, 1451
Sse9I AATT 9 cut(s) 146, 241, 1214, 1956, 2116, 2437, 2613, 2726, 3053
SspMI CTAG 5 cut(s) 1188, 1875, 2534, 3096, 3138
SstI GAGCTC 1 cut(s) 528
StyD4I CCNGG 7 cut(s) 105, 447, 466, 1515, 1534, 2053, 2336
StyI CCWWGG 1 cut(s) 2839
TaiI ACGT 5 cut(s) 1060, 1071, 2029, 2196, 2997
TaqI TCGA 9 cut(s) 666, 758, 1740, 1803, 2479, 2901, 2976, 3187, 3357
TasI AATT 9 cut(s) 146, 241, 1214, 1956, 2116, 2437, 2613, 2726, 3053
TatI WGTACW 5 cut(s) 1031, 1821, 2459, 2472, 3284
TauI GCSGC 4 cut(s) 135, 966, 1701, 2573
TfiI GAWTC 4 cut(s) 663, 886, 1665, 2657
Tru1I TTAA 8 cut(s) 341, 1086, 1773, 2196, 2390, 2595, 2835, 2943
Tru9I TTAA 8 cut(s) 341, 1086, 1773, 2196, 2390, 2595, 2835, 2943
TscAI CASTG 8 cut(s) 143, 744, 1010, 1211, 1730, 1979, 2819, 2915
TspGWI ACGGA 1 cut(s) 1065
TspRI CASTG 8 cut(s) 143, 744, 1010, 1211, 1730, 1979, 2819, 2915
Tth111I GACNNNGTC 2 cut(s) 2501, 2993
Van91I CCANNNNNTGG 2 cut(s) 1181, 2263
Vha464I CTTAAG 2 cut(s) 340, 2389
VpaK11BI GGWCC 8 cut(s) 103, 116, 464, 1184, 1532, 1764, 1871, 2266
XagI CCTNNNNNAGG 1 cut(s) 3405
XapI RAATTY 1 cut(s) 3053
XbaI TCTAGA 1 cut(s) 2533
XceI RCATGY 6 cut(s) 383, 737, 1143, 1451, 1887, 2460
XcmI CCANNNNNNNNNTGG 2 cut(s) 974, 1235
XhoI CTCGAG 2 cut(s) 2478, 3186
XmiI GTMKAC 1 cut(s) 3144
XmnI GAANNNNTTC 1 cut(s) 3372
XspI CTAG 5 cut(s) 1188, 1875, 2534, 3096, 3138
ZrmI AGTACT 3 cut(s) 1823, 2474, 3286
Zsp2I ATGCAT 6 cut(s) 195, 543, 903, 1623, 1889, 2633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.