C1 domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 32 |
| AccB1I | GGYRCC | 1 cut(s) | 183 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 106 |
| AccII | CGCG | 1 cut(s) | 252 |
| AciI | CCGC | 2 cut(s) | 411, 1048 |
| AcsI | RAATTY | 1 cut(s) | 484 |
| AcuI | CTGAAG | 2 cut(s) | 373, 731 |
| AfaI | GTAC | 5 cut(s) | 23, 59, 317, 938, 1123 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 106, 638, 1244 |
| AflII | CTTAAG | 1 cut(s) | 622 |
| AflIII | ACRYGT | 1 cut(s) | 84 |
| AgsI | TTSAA | 4 cut(s) | 191, 725, 1032, 1259 |
| AjiI | CACGTC | 1 cut(s) | 34 |
| AjnI | CCWGG | 3 cut(s) | 320, 488, 1348 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 848, 880 |
| AluBI | AGCT | 8 cut(s) | 103, 175, 311, 510, 876, 964, 991, 1114 |
| AluI | AGCT | 8 cut(s) | 103, 175, 311, 510, 876, 964, 991, 1114 |
| Alw21I | GWGCWC | 1 cut(s) | 565 |
| Alw26I | GTCTC | 3 cut(s) | 519, 590, 1338 |
| ApeKI | GCWGC | 2 cut(s) | 510, 1050 |
| ApoI | RAATTY | 1 cut(s) | 484 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1209 |
| AspLEI | GCGC | 2 cut(s) | 125, 254 |
| AsuHPI | GGTGA | 4 cut(s) | 65, 386, 590, 1150 |
| BanI | GGYRCC | 1 cut(s) | 183 |
| BanII | GRGCYC | 3 cut(s) | 631, 1184, 1349 |
| BauI | CACGAG | 1 cut(s) | 573 |
| BbsI | GAAGAC | 1 cut(s) | 198 |
| Bbv12I | GWGCWC | 1 cut(s) | 565 |
| BbvI | GCAGC | 2 cut(s) | 497, 1037 |
| BccI | CCATC | 3 cut(s) | 216, 220, 903 |
| BceAI | ACGGC | 1 cut(s) | 859 |
| BciT130I | CCWGG | 3 cut(s) | 322, 490, 1350 |
| BclI | TGATCA | 1 cut(s) | 418 |
| BcoDI | GTCTC | 3 cut(s) | 519, 590, 1338 |
| BfaI | CTAG | 4 cut(s) | 716, 975, 992, 1115 |
| BfrI | CTTAAG | 1 cut(s) | 622 |
| BisI | GCNGC | 3 cut(s) | 411, 511, 1051 |
| BlsI | GCNGC | 3 cut(s) | 412, 512, 1052 |
| BmcAI | AGTACT | 3 cut(s) | 59, 317, 1123 |
| Bme1390I | CCNGG | 3 cut(s) | 322, 490, 1350 |
| BmgBI | CACGTC | 1 cut(s) | 34 |
| BmiI | GGNNCC | 3 cut(s) | 185, 630, 853 |
| BmrFI | CCNGG | 3 cut(s) | 322, 490, 1350 |
| BmsI | GCATC | 4 cut(s) | 361, 480, 875, 1126 |
| BpiI | GAAGAC | 1 cut(s) | 198 |
| BpmI | CTGGAG | 1 cut(s) | 82 |
| BpuEI | CTTGAG | 1 cut(s) | 944 |
| BsaBI | GATNNNNATC | 1 cut(s) | 894 |
| BsaJI | CCNNGG | 2 cut(s) | 321, 1348 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 106, 638, 1244 |
| Bse1I | ACTGG | 3 cut(s) | 65, 414, 607 |
| Bse3DI | GCAATG | 2 cut(s) | 294, 1081 |
| Bse8I | GATNNNNATC | 1 cut(s) | 894 |
| BseBI | CCWGG | 3 cut(s) | 322, 490, 1350 |
| BseDI | CCNNGG | 2 cut(s) | 321, 1348 |
| BseGI | GGATG | 4 cut(s) | 208, 471, 952, 1301 |
| BseJI | GATNNNNATC | 1 cut(s) | 894 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 106, 638, 1244 |
| BseMI | GCAATG | 2 cut(s) | 294, 1081 |
| BseMII | CTCAG | 2 cut(s) | 303, 578 |
| BseNI | ACTGG | 3 cut(s) | 65, 414, 607 |
| BseRI | GAGGAG | 1 cut(s) | 797 |
| BseXI | GCAGC | 2 cut(s) | 497, 1037 |
| BsgI | GTGCAG | 2 cut(s) | 496, 772 |
| Bsh1236I | CGCG | 1 cut(s) | 252 |
| BshNI | GGYRCC | 1 cut(s) | 183 |
| BsiHKAI | GWGCWC | 1 cut(s) | 565 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 106, 638, 1244 |
| BsmAI | GTCTC | 3 cut(s) | 519, 590, 1338 |
| BsmBI | CGTCTC | 1 cut(s) | 519 |
| BsmI | GAATGC | 2 cut(s) | 125, 1086 |
| Bsp1286I | GDGCHC | 4 cut(s) | 565, 631, 1184, 1349 |
| Bsp143I | GATC | 4 cut(s) | 378, 418, 742, 949 |
| BspACI | CCGC | 2 cut(s) | 411, 1048 |
| BspCNI | CTCAG | 2 cut(s) | 304, 577 |
| BspFNI | CGCG | 1 cut(s) | 252 |
| BspLI | GGNNCC | 3 cut(s) | 185, 630, 853 |
| BspQI | GCTCTTC | 1 cut(s) | 1337 |
| BspT107I | GGYRCC | 1 cut(s) | 183 |
| BspTI | CTTAAG | 1 cut(s) | 622 |
| BsrDI | GCAATG | 2 cut(s) | 294, 1081 |
| BsrI | ACTGG | 3 cut(s) | 65, 414, 607 |
| BssECI | CCNNGG | 2 cut(s) | 321, 1348 |
| BssMI | GATC | 4 cut(s) | 378, 418, 742, 949 |
| BssSI | CACGAG | 1 cut(s) | 573 |
| Bst2BI | CACGAG | 1 cut(s) | 573 |
| Bst2UI | CCWGG | 3 cut(s) | 322, 490, 1350 |
| Bst4CI | ACNGT | 1 cut(s) | 446 |
| Bst6I | CTCTTC | 2 cut(s) | 1260, 1337 |
| BstAFI | CTTAAG | 1 cut(s) | 622 |
| BstC8I | GCNNGC | 4 cut(s) | 101, 235, 301, 340 |
| BstDEI | CTNAG | 2 cut(s) | 312, 564 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1242 |
| BstF5I | GGATG | 4 cut(s) | 208, 471, 952, 1301 |
| BstFNI | CGCG | 1 cut(s) | 252 |
| BstHHI | GCGC | 2 cut(s) | 125, 254 |
| BstKTI | GATC | 4 cut(s) | 381, 421, 745, 952 |
| BstMAI | GTCTC | 3 cut(s) | 519, 590, 1338 |
| BstMBI | GATC | 4 cut(s) | 378, 418, 742, 949 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 225, 234, 296, 344, 1111 |
| BstNI | CCWGG | 3 cut(s) | 322, 490, 1350 |
| BstNSI | RCATGY | 2 cut(s) | 88, 303 |
| BstSCI | CCNGG | 3 cut(s) | 320, 488, 1348 |
| BstUI | CGCG | 1 cut(s) | 252 |
| BstV1I | GCAGC | 2 cut(s) | 497, 1037 |
| BstV2I | GAAGAC | 1 cut(s) | 198 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1229 |
| BtgZI | GCGATG | 3 cut(s) | 149, 282, 785 |
| BtrI | CACGTC | 1 cut(s) | 34 |
| BtsCI | GGATG | 4 cut(s) | 208, 471, 952, 1301 |
| BtsIMutI | CAGTG | 3 cut(s) | 421, 659, 755 |
| Cac8I | GCNNGC | 4 cut(s) | 101, 235, 301, 340 |
| CfoI | GCGC | 2 cut(s) | 125, 254 |
| Csp6I | GTAC | 5 cut(s) | 22, 58, 316, 937, 1122 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 20, 55, 829, 864 |
| CviAII | CATG | 6 cut(s) | 85, 300, 785, 909, 986, 1142 |
| CviQI | GTAC | 5 cut(s) | 22, 58, 316, 937, 1122 |
| DdeI | CTNAG | 2 cut(s) | 312, 564 |
| DpnI | GATC | 4 cut(s) | 380, 420, 744, 951 |
| DpnII | GATC | 4 cut(s) | 378, 418, 742, 949 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 32 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 32 |
| Eam1104I | CTCTTC | 2 cut(s) | 1260, 1337 |
| EarI | CTCTTC | 2 cut(s) | 1260, 1337 |
| Eco24I | GRGCYC | 3 cut(s) | 631, 1184, 1349 |
| Eco57I | CTGAAG | 2 cut(s) | 373, 731 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1242 |
| EcoRII | CCWGG | 3 cut(s) | 320, 488, 1348 |
| EcoT38I | GRGCYC | 3 cut(s) | 631, 1184, 1349 |
| Esp3I | CGTCTC | 1 cut(s) | 519 |
| FaeI | CATG | 6 cut(s) | 88, 303, 788, 912, 989, 1145 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 616, 648 |
| FatI | CATG | 6 cut(s) | 84, 299, 784, 908, 985, 1141 |
| FauNDI | CATATG | 1 cut(s) | 970 |
| FbaI | TGATCA | 1 cut(s) | 418 |
| Fnu4HI | GCNGC | 3 cut(s) | 411, 511, 1051 |
| FokI | GGATG | 4 cut(s) | 195, 458, 939, 1308 |
| FriOI | GRGCYC | 3 cut(s) | 631, 1184, 1349 |
| Fsp4HI | GCNGC | 3 cut(s) | 411, 511, 1051 |
| FspBI | CTAG | 4 cut(s) | 716, 975, 992, 1115 |
| GlaI | GCGC | 2 cut(s) | 124, 253 |
| GluI | GCNGC | 3 cut(s) | 411, 511, 1051 |
| GsuI | CTGGAG | 1 cut(s) | 82 |
| HhaI | GCGC | 2 cut(s) | 125, 254 |
| Hin1II | CATG | 6 cut(s) | 88, 303, 788, 912, 989, 1145 |
| Hin6I | GCGC | 2 cut(s) | 123, 252 |
| HinP1I | GCGC | 2 cut(s) | 123, 252 |
| HincII | GTYRAC | 1 cut(s) | 1148 |
| HindII | GTYRAC | 1 cut(s) | 1148 |
| HinfI | GANTC | 6 cut(s) | 71, 362, 497, 583, 788, 1028 |
| HphI | GGTGA | 4 cut(s) | 65, 386, 590, 1150 |
| Hpy166II | GTNNAC | 2 cut(s) | 612, 1148 |
| Hpy188I | TCNGA | 3 cut(s) | 367, 378, 917 |
| Hpy188III | TCNNGA | 1 cut(s) | 1032 |
| Hpy8I | GTNNAC | 2 cut(s) | 612, 1148 |
| Hpy99I | CGWCG | 1 cut(s) | 950 |
| HpyAV | CCTTC | 4 cut(s) | 642, 820, 1238, 1286 |
| HpyCH4III | ACNGT | 1 cut(s) | 446 |
| HpyCH4IV | ACGT | 3 cut(s) | 33, 720, 795 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 225, 234, 296, 344, 1111 |
| HpyF3I | CTNAG | 2 cut(s) | 312, 564 |
| HpySE526I | ACGT | 3 cut(s) | 33, 720, 795 |
| Hsp92II | CATG | 6 cut(s) | 88, 303, 788, 912, 989, 1145 |
| HspAI | GCGC | 2 cut(s) | 123, 252 |
| Ksp22I | TGATCA | 1 cut(s) | 418 |
| Kzo9I | GATC | 4 cut(s) | 378, 418, 742, 949 |
| LguI | GCTCTTC | 1 cut(s) | 1337 |
| LmnI | GCTCC | 2 cut(s) | 379, 634 |
| Lsp1109I | GCAGC | 2 cut(s) | 497, 1037 |
| LweI | GCATC | 4 cut(s) | 361, 480, 875, 1126 |
| MaeI | CTAG | 4 cut(s) | 716, 975, 992, 1115 |
| MaeII | ACGT | 3 cut(s) | 33, 720, 795 |
| MaeIII | GTNAC | 6 cut(s) | 68, 392, 567, 1061, 1156, 1306 |
| MalI | GATC | 4 cut(s) | 380, 420, 744, 951 |
| MboI | GATC | 4 cut(s) | 378, 418, 742, 949 |
| MboII | GAAGA | 7 cut(s) | 203, 338, 341, 737, 1205, 1277, 1354 |
| MfeI | CAATTG | 2 cut(s) | 37, 694 |
| MhlI | GDGCHC | 4 cut(s) | 565, 631, 1184, 1349 |
| MluCI | AATT | 5 cut(s) | 37, 178, 453, 484, 694 |
| MlyI | GAGTC | 3 cut(s) | 65, 592, 782 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1209 |
| MseI | TTAA | 7 cut(s) | 170, 204, 435, 623, 771, 780, 813 |
| MspA1I | CMGCKG | 2 cut(s) | 311, 1050 |
| MspCI | CTTAAG | 1 cut(s) | 622 |
| MspR9I | CCNGG | 3 cut(s) | 322, 490, 1350 |
| MunI | CAATTG | 2 cut(s) | 37, 694 |
| Mva1269I | GAATGC | 2 cut(s) | 125, 1086 |
| MvaI | CCWGG | 3 cut(s) | 322, 490, 1350 |
| MvnI | CGCG | 1 cut(s) | 252 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 225, 234, 296, 344, 1111 |
| NdeI | CATATG | 1 cut(s) | 970 |
| NdeII | GATC | 4 cut(s) | 378, 418, 742, 949 |
| NlaIII | CATG | 6 cut(s) | 88, 303, 788, 912, 989, 1145 |
| NlaIV | GGNNCC | 3 cut(s) | 185, 630, 853 |
| NmuCI | GTSAC | 4 cut(s) | 68, 392, 1061, 1156 |
| NspI | RCATGY | 2 cut(s) | 88, 303 |
| PaeI | GCATGC | 1 cut(s) | 303 |
| PciI | ACATGT | 1 cut(s) | 84 |
| PciSI | GCTCTTC | 1 cut(s) | 1337 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 30 |
| PctI | GAATGC | 2 cut(s) | 125, 1086 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1209 |
| PfeI | GAWTC | 3 cut(s) | 362, 497, 1028 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 106 |
| PfoI | TCCNGGA | 1 cut(s) | 488 |
| PkrI | GCNGC | 3 cut(s) | 412, 512, 1052 |
| PleI | GAGTC | 3 cut(s) | 65, 591, 782 |
| PpsI | GAGTC | 3 cut(s) | 65, 591, 782 |
| PscI | ACATGT | 1 cut(s) | 84 |
| Psp6I | CCWGG | 3 cut(s) | 320, 488, 1348 |
| PspGI | CCWGG | 3 cut(s) | 320, 488, 1348 |
| PspN4I | GGNNCC | 3 cut(s) | 185, 630, 853 |
| PvuII | CAGCTG | 1 cut(s) | 311 |
| RsaI | GTAC | 5 cut(s) | 23, 59, 317, 938, 1123 |
| RsaNI | GTAC | 5 cut(s) | 22, 58, 316, 937, 1122 |
| SapI | GCTCTTC | 1 cut(s) | 1337 |
| SaqAI | TTAA | 7 cut(s) | 170, 204, 435, 623, 771, 780, 813 |
| SatI | GCNGC | 3 cut(s) | 411, 511, 1051 |
| Sau3AI | GATC | 4 cut(s) | 378, 418, 742, 949 |
| ScaI | AGTACT | 3 cut(s) | 59, 317, 1123 |
| SchI | GAGTC | 3 cut(s) | 65, 592, 782 |
| ScrFI | CCNGG | 3 cut(s) | 322, 490, 1350 |
| SduI | GDGCHC | 4 cut(s) | 565, 631, 1184, 1349 |
| SfaNI | GCATC | 4 cut(s) | 361, 480, 875, 1126 |
| SmlI | CTYRAG | 2 cut(s) | 622, 959 |
| SmoI | CTYRAG | 2 cut(s) | 622, 959 |
| SphI | GCATGC | 1 cut(s) | 303 |
| Sse9I | AATT | 5 cut(s) | 37, 178, 453, 484, 694 |
| SsiI | CCGC | 2 cut(s) | 411, 1048 |
| SspMI | CTAG | 4 cut(s) | 716, 975, 992, 1115 |
| StyD4I | CCNGG | 3 cut(s) | 320, 488, 1348 |
| TaaI | ACNGT | 1 cut(s) | 446 |
| TaiI | ACGT | 3 cut(s) | 36, 723, 798 |
| TaqI | TCGA | 3 cut(s) | 824, 981, 1194 |
| TasI | AATT | 5 cut(s) | 37, 178, 453, 484, 694 |
| TatI | WGTACW | 3 cut(s) | 57, 315, 1121 |
| TauI | GCSGC | 1 cut(s) | 413 |
| TfiI | GAWTC | 3 cut(s) | 362, 497, 1028 |
| Tru1I | TTAA | 7 cut(s) | 170, 204, 435, 623, 771, 780, 813 |
| Tru9I | TTAA | 7 cut(s) | 170, 204, 435, 623, 771, 780, 813 |
| TscAI | CASTG | 3 cut(s) | 421, 659, 755 |
| TseFI | GTSAC | 4 cut(s) | 68, 392, 1061, 1156 |
| TseI | GCWGC | 2 cut(s) | 510, 1050 |
| Tsp45I | GTSAC | 4 cut(s) | 68, 392, 1061, 1156 |
| TspDTI | ATGAA | 4 cut(s) | 101, 117, 285, 788 |
| TspRI | CASTG | 3 cut(s) | 421, 659, 755 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 106 |
| Vha464I | CTTAAG | 1 cut(s) | 622 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1242 |
| XapI | RAATTY | 1 cut(s) | 484 |
| XceI | RCATGY | 2 cut(s) | 88, 303 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1209 |
| XspI | CTAG | 4 cut(s) | 716, 975, 992, 1115 |
| ZrmI | AGTACT | 3 cut(s) | 59, 317, 1123 |