Prupe.7G081900_v2.0.a1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000226
Physical Location & Seq
Reverse (-)
11712253 .. 11713934
1682 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G081900.1

Sequence Viewer

Length: 783 bp
ATGGAGGCTCAACATTCCAGTAGTAGCCATCCATCAAAACTTGATCATTTCAGTCACAGCCATGAATTGATGTTCAAAGAAGAACAGAAAGAGAAAAACTATGATGACGAAGTAGTTTTTTGCAATGCGTGCGAAGAGCCAGTGTTTGGCCCTAGATACAGTTGCAACACATGTGTCGACCCCAATTCCACCTTCAACCTCCATAAATCATGTGCGGAAGAGTTATCCCGCGAGATCATCGAGCACCCGATTCACTCGCACAAACTGACATTCGAATGCAAAACAGAGCTTTCCGCAGAACTTTTCACTTGTAATGCCTGCCACCAACCTTGCAGATTAGCCTACACTTGTTTCCAATGTCATATCGCCTTTGACCTCAAATGTGCCTCCAATTGGCGCCACATTCTTGACAACGAAGGGTACCACGTGCATCAATTCAGCGTCCTTCGGAAAGGAATACCATTTGATTGTGAGGTCTGTGGCAAAAGTCAGGATTCACTCCCCTACCTATCTACCATCTGCCACCTCTTGGTCGGTAAGGAATGCACACAATCACTACCACACACCATCAAAATTACCTTGCACGAACACCCTCTCAGGCTCATCTGGTTCCTTGAAGAAGGTTACCCAAATGACCAAATTTGTAAAATCTGCTATACAAGCACGAACAAAAGTCGCGCTGTTTATCAATGTAAAGATTGTGATTACGTTGCCACACTCTATGCTTCAGGCTCAAAGGCAACCAGGTTGACTACCGAATTGCAATTTGGGAGAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

261

Amino Acids

29.93

Weight (kDa)

6.03

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 420
AccB1I GGYRCC 2 cut(s) 396, 420
AccB7I CCANNNNNTGG 2 cut(s) 146, 529
AccI GTMKAC 1 cut(s) 177
AccII CGCG 2 cut(s) 231, 678
AciI CCGC 3 cut(s) 215, 229, 294
AcsI RAATTY 1 cut(s) 639
AcuI CTGAAG 1 cut(s) 711
AcvI CACGTG 1 cut(s) 427
AcyI GRCGYC 1 cut(s) 397
AfaI GTAC 1 cut(s) 422
AfiI CCNNNNNNNGG 3 cut(s) 146, 393, 529
AflIII ACRYGT 1 cut(s) 170
AgsI TTSAA 3 cut(s) 76, 196, 617
AjnI CCWGG 1 cut(s) 743
AjuI GAANNNNNNNTTGG 4 cut(s) 176, 208, 750, 782
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 768
AoxI GGCC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 639
Asp718I GGTACC 1 cut(s) 420
AspLEI GCGC 2 cut(s) 399, 680
AspS9I GGNCC 1 cut(s) 149
AsuII TTCGAA 1 cut(s) 273
BanI GGYRCC 2 cut(s) 396, 420
BbrPI CACGTG 1 cut(s) 427
Bbv12I GWGCWC 1 cut(s) 246
BccI CCATC 4 cut(s) 36, 40, 524, 575
BciT130I CCWGG 1 cut(s) 745
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 768
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 400
Bme1390I CCNGG 1 cut(s) 745
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 3 cut(s) 398, 422, 611
BmrFI CCNGG 1 cut(s) 745
BmsI GCATC 1 cut(s) 439
Bpu14I TTCGAA 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 397
Bsc4I CCNNNNNNNGG 3 cut(s) 146, 393, 529
Bse1I ACTGG 2 cut(s) 18, 140
Bse3DI GCAATG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 745
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 146, 393, 529
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 1 cut(s) 610
BseNI ACTGG 2 cut(s) 18, 140
Bsh1236I CGCG 2 cut(s) 231, 678
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 2 cut(s) 396, 420
BsiHKAI GWGCWC 1 cut(s) 246
BslI CCNNNNNNNGG 3 cut(s) 146, 393, 529
BsmAI GTCTC 1 cut(s) 768
BsmI GAATGC 2 cut(s) 281, 548
BsnI GGCC 1 cut(s) 150
Bsp119I TTCGAA 1 cut(s) 273
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 43, 234
BspACI CCGC 3 cut(s) 215, 229, 294
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 609
BspFNI CGCG 2 cut(s) 231, 678
BspLI GGNNCC 3 cut(s) 398, 422, 611
BspQI GCTCTTC 1 cut(s) 129
BspT104I TTCGAA 1 cut(s) 273
BspT107I GGYRCC 2 cut(s) 396, 420
BsrDI GCAATG 1 cut(s) 130
BsrI ACTGG 2 cut(s) 18, 140
BssMI GATC 2 cut(s) 43, 234
BssNI GRCGYC 1 cut(s) 397
Bst2UI CCWGG 1 cut(s) 745
Bst4CI ACNGT 1 cut(s) 161
Bst6I CTCTTC 2 cut(s) 129, 213
BstACI GRCGYC 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 427
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 130, 319
BstDEI CTNAG 1 cut(s) 596
BstEII GGTNACC 1 cut(s) 623
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 2 cut(s) 231, 678
BstH2I RGCGCY 1 cut(s) 400
BstHHI GCGC 2 cut(s) 399, 680
BstKTI GATC 2 cut(s) 46, 237
BstMAI GTCTC 1 cut(s) 768
BstMBI GATC 2 cut(s) 43, 234
BstMWI GCNNNNNNNGC 2 cut(s) 129, 660
BstNI CCWGG 1 cut(s) 745
BstNSI RCATGY 1 cut(s) 174
BstPI GGTNACC 1 cut(s) 623
BstSCI CCNGG 1 cut(s) 743
BstUI CGCG 2 cut(s) 231, 678
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 28
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 130, 319
CfoI GCGC 2 cut(s) 399, 680
Cfr13I GGNCC 1 cut(s) 149
CseI GACGC 1 cut(s) 430
CsiI ACCWGGT 1 cut(s) 743
Csp6I GTAC 1 cut(s) 421
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 3 cut(s) 62, 171, 210
CviJI RGCY 9 cut(s) 8, 27, 60, 139, 150, 289, 341, 601, 732
CviKI_1 RGCY 9 cut(s) 8, 27, 60, 139, 150, 289, 341, 601, 732
CviQI GTAC 1 cut(s) 421
DdeI CTNAG 1 cut(s) 596
DinI GGCGCC 1 cut(s) 398
DpnI GATC 2 cut(s) 45, 236
DpnII GATC 2 cut(s) 43, 234
Eam1104I CTCTTC 2 cut(s) 129, 213
EarI CTCTTC 2 cut(s) 129, 213
Eco57I CTGAAG 1 cut(s) 711
Eco72I CACGTG 1 cut(s) 427
Eco91I GGTNACC 1 cut(s) 623
EcoO65I GGTNACC 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 743
EgeI GGCGCC 1 cut(s) 398
EheI GGCGCC 1 cut(s) 398
FaeI CATG 3 cut(s) 65, 174, 213
FaiI YATR 8 cut(s) 63, 102, 172, 204, 211, 363, 657, 723
FatI CATG 3 cut(s) 61, 170, 209
FauI CCCGC 1 cut(s) 236
FbaI TGATCA 1 cut(s) 43
FblI GTMKAC 1 cut(s) 177
FokI GGATG 1 cut(s) 15
FspBI CTAG 1 cut(s) 153
GlaI GCGC 2 cut(s) 398, 679
HaeII RGCGCY 1 cut(s) 400
HaeIII GGCC 1 cut(s) 150
HgaI GACGC 1 cut(s) 430
HhaI GCGC 2 cut(s) 399, 680
Hin1I GRCGYC 1 cut(s) 397
Hin1II CATG 3 cut(s) 65, 174, 213
Hin6I GCGC 2 cut(s) 397, 678
HinP1I GCGC 2 cut(s) 397, 678
HincII GTYRAC 2 cut(s) 178, 750
HindII GTYRAC 2 cut(s) 178, 750
HinfI GANTC 2 cut(s) 250, 494
Hpy166II GTNNAC 2 cut(s) 178, 750
Hpy188I TCNGA 1 cut(s) 450
Hpy188III TCNNGA 2 cut(s) 407, 491
Hpy8I GTNNAC 2 cut(s) 178, 750
HpyAV CCTTC 4 cut(s) 202, 410, 455, 614
HpyCH4III ACNGT 1 cut(s) 161
HpyCH4IV ACGT 2 cut(s) 426, 708
HpyCH4V TGCA 8 cut(s) 123, 165, 279, 333, 430, 546, 583, 763
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 660
HpyF3I CTNAG 1 cut(s) 596
HpySE526I ACGT 2 cut(s) 426, 708
Hsp92I GRCGYC 1 cut(s) 397
Hsp92II CATG 3 cut(s) 65, 174, 213
HspAI GCGC 2 cut(s) 397, 678
KasI GGCGCC 1 cut(s) 396
KpnI GGTACC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 2 cut(s) 43, 234
LguI GCTCTTC 1 cut(s) 129
LpnPI CCDG 9 cut(s) 31, 153, 331, 476, 583, 592, 714, 730, 757
LweI GCATC 1 cut(s) 439
MabI ACCWGGT 1 cut(s) 743
MaeI CTAG 1 cut(s) 153
MaeII ACGT 2 cut(s) 426, 708
MaeIII GTNAC 2 cut(s) 53, 623
MalI GATC 2 cut(s) 45, 236
MboI GATC 2 cut(s) 43, 234
MboII GAAGA 4 cut(s) 92, 146, 230, 629
MfeI CAATTG 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 8 cut(s) 65, 184, 391, 434, 573, 639, 758, 764
Mly113I GGCGCC 1 cut(s) 397
MnlI CCTC 6 cut(s) 209, 386, 397, 466, 536, 603
MslI CAYNNNNRTG 2 cut(s) 60, 274
MspR9I CCNGG 1 cut(s) 745
MunI CAATTG 1 cut(s) 391
Mva1269I GAATGC 2 cut(s) 281, 548
MvaI CCWGG 1 cut(s) 745
MvnI CGCG 2 cut(s) 231, 678
MwoI GCNNNNNNNGC 2 cut(s) 129, 660
NarI GGCGCC 1 cut(s) 397
NdeII GATC 2 cut(s) 43, 234
NlaIII CATG 3 cut(s) 65, 174, 213
NlaIV GGNNCC 3 cut(s) 398, 422, 611
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 1 cut(s) 174
NspV TTCGAA 1 cut(s) 273
PciI ACATGT 1 cut(s) 170
PciSI GCTCTTC 1 cut(s) 129
PctI GAATGC 2 cut(s) 281, 548
PfeI GAWTC 2 cut(s) 250, 494
PflMI CCANNNNNTGG 2 cut(s) 146, 529
PluTI GGCGCC 1 cut(s) 400
PmaCI CACGTG 1 cut(s) 427
PmlI CACGTG 1 cut(s) 427
Ppu21I YACGTR 1 cut(s) 427
PscI ACATGT 1 cut(s) 170
Psp6I CCWGG 1 cut(s) 743
PspCI CACGTG 1 cut(s) 427
PspEI GGTNACC 1 cut(s) 623
PspGI CCWGG 1 cut(s) 743
PspN4I GGNNCC 3 cut(s) 398, 422, 611
PspPI GGNCC 1 cut(s) 149
RsaI GTAC 1 cut(s) 422
RsaNI GTAC 1 cut(s) 421
RseI CAYNNNNRTG 2 cut(s) 60, 274
SalI GTCGAC 1 cut(s) 176
SapI GCTCTTC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 43, 234
Sau96I GGNCC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 745
SduI GDGCHC 1 cut(s) 246
SexAI ACCWGGT 1 cut(s) 743
SfaNI GCATC 1 cut(s) 439
SfoI GGCGCC 1 cut(s) 398
SfuI TTCGAA 1 cut(s) 273
SmiMI CAYNNNNRTG 2 cut(s) 60, 274
Sse9I AATT 8 cut(s) 65, 184, 391, 434, 573, 639, 758, 764
SsiI CCGC 3 cut(s) 215, 229, 294
SspDI GGCGCC 1 cut(s) 396
SspMI CTAG 1 cut(s) 153
StyD4I CCNGG 1 cut(s) 743
TaaI ACNGT 1 cut(s) 161
TaiI ACGT 2 cut(s) 429, 711
TaqI TCGA 3 cut(s) 177, 240, 273
TasI AATT 8 cut(s) 65, 184, 391, 434, 573, 639, 758, 764
TfiI GAWTC 2 cut(s) 250, 494
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 78
TspRI CASTG 1 cut(s) 147
Van91I CCANNNNNTGG 2 cut(s) 146, 529
XapI RAATTY 1 cut(s) 639
XceI RCATGY 1 cut(s) 174
XmiI GTMKAC 1 cut(s) 177
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.