Rh1DG302500

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000226
Physical Location & Seq
Forward (+)
52934752 .. 52935273
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG302500.1

Sequence Viewer

Length: 522 bp
ATGGGTTGTGGTTCAAAAATATTTTTCTGCTTCAGTTGTAAGAGATGCAATTTTCATCTTTGCATAGCCTGTGTTAGATTACCTCTTACTGCTGAGCACCGATACGACACGCATCCTCTAAAGCTCACCTATGAAAGTATTGAGGACGACCTAGGTGAATACTACTGTGAGATATGTGAAGGAAAAAGGGATCCGTCACATTGGTTCTACTGGTGCAAAGAGTGCGAGTTTGACTGTCATCCTCATTGCATTATAGGGAGGTATCCGCGAGTCAAGTTGGGGAGCACTTACGAGCATGAGGCTCATGTCCAACACCCCGTCACTCTTGTTAGCAAGTGGAAGAGCCCCATTCGGGGCGATAAAAGAGACAACATTCTTCCTTGTGAGAAGTGCGGTGAACTTTGCGAAGGATTAGTATTTGAATGCGGAGAATGCAACATAAATTTCCATCGAGACGGATGTTGTGGAACTATAGCTTCGGAAAGTTCTCGCAGGTCTCCTCAGATCGAAGAGCTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

173

Amino Acids

20.01

Weight (kDa)

6.05

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 34 - 84 5.9e-09 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 483
AccII CGCG 1 cut(s) 268
AciI CCGC 3 cut(s) 266, 393, 426
AclWI GGATC 2 cut(s) 185, 198
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 16
AfiI CCNNNNNNNGG 2 cut(s) 352, 353
AgsI TTSAA 2 cut(s) 15, 422
AluBI AGCT 3 cut(s) 124, 476, 514
AluI AGCT 3 cut(s) 124, 476, 514
Alw21I GWGCWC 2 cut(s) 99, 287
Alw26I GTCTC 3 cut(s) 360, 447, 501
AlwI GGATC 2 cut(s) 185, 198
ApoI RAATTY 1 cut(s) 442
AspA2I CCTAGG 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 118, 167, 407
AvrII CCTAGG 1 cut(s) 151
BamHI GGATCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 347
Bbv12I GWGCWC 2 cut(s) 99, 287
BccI CCATC 1 cut(s) 456
BciVI GTATCC 1 cut(s) 273
BcoDI GTCTC 3 cut(s) 360, 447, 501
BfaI CTAG 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 483
BfuI GTATCC 1 cut(s) 273
BlnI CCTAGG 1 cut(s) 151
BlpI GCTNAGC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 192
BmsI GCATC 2 cut(s) 35, 121
Bpu1102I GCTNAGC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 353
Bse1I ACTGG 1 cut(s) 215
Bse3DI GCAATG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 151
BseGI GGATG 3 cut(s) 112, 238, 464
BseLI CCNNNNNNNGG 2 cut(s) 352, 353
BseMI GCAATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 84, 515
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 268
BsiHKAI GWGCWC 2 cut(s) 99, 287
BslI CCNNNNNNNGG 2 cut(s) 352, 353
BsmAI GTCTC 3 cut(s) 360, 447, 501
BsmBI CGTCTC 1 cut(s) 447
BsmI GAATGC 2 cut(s) 428, 437
Bso31I GGTCTC 1 cut(s) 501
Bsp1286I GDGCHC 3 cut(s) 99, 287, 347
Bsp143I GATC 2 cut(s) 190, 504
Bsp1720I GCTNAGC 1 cut(s) 93
BspACI CCGC 3 cut(s) 266, 393, 426
BspCNI CTCAG 2 cut(s) 85, 514
BspFNI CGCG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 192
BspMI ACCTGC 1 cut(s) 483
BspPI GGATC 2 cut(s) 185, 198
BspQI GCTCTTC 2 cut(s) 335, 504
BspTNI GGTCTC 1 cut(s) 501
BsrDI GCAATG 1 cut(s) 244
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 2 cut(s) 190, 504
BssT1I CCWWGG 1 cut(s) 151
Bst4CI ACNGT 2 cut(s) 167, 236
Bst6I CTCTTC 2 cut(s) 335, 504
BstAPI GCANNNNNTGC 1 cut(s) 222
BstDEI CTNAG 3 cut(s) 93, 501, 515
BstF5I GGATG 3 cut(s) 112, 238, 464
BstFNI CGCG 1 cut(s) 268
BstKTI GATC 2 cut(s) 193, 507
BstMAI GTCTC 3 cut(s) 360, 447, 501
BstMBI GATC 2 cut(s) 190, 504
BstMWI GCNNNNNNNGC 2 cut(s) 222, 432
BstSFI CTRYAG 1 cut(s) 471
BstUI CGCG 1 cut(s) 268
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 1 cut(s) 273
BtsCI GGATG 3 cut(s) 112, 238, 464
BveI ACCTGC 1 cut(s) 483
CviAII CATG 2 cut(s) 296, 305
CviJI RGCY 6 cut(s) 68, 124, 302, 345, 476, 514
CviKI_1 RGCY 6 cut(s) 68, 124, 302, 345, 476, 514
DdeI CTNAG 3 cut(s) 93, 501, 515
DpnI GATC 2 cut(s) 192, 506
DpnII GATC 2 cut(s) 190, 504
Eam1104I CTCTTC 2 cut(s) 335, 504
EarI CTCTTC 2 cut(s) 335, 504
Eco130I CCWWGG 1 cut(s) 151
Eco24I GRGCYC 1 cut(s) 347
Eco31I GGTCTC 1 cut(s) 501
Eco57I CTGAAG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 347
ErhI CCWWGG 1 cut(s) 151
Esp3I CGTCTC 1 cut(s) 447
FaeI CATG 2 cut(s) 299, 308
FaiI YATR 8 cut(s) 65, 132, 175, 254, 297, 306, 440, 473
FatI CATG 2 cut(s) 295, 304
FokI GGATG 3 cut(s) 99, 225, 471
FriOI GRGCYC 1 cut(s) 347
FspBI CTAG 1 cut(s) 152
Hin1II CATG 2 cut(s) 299, 308
HinfI GANTC 1 cut(s) 270
HphI GGTGA 3 cut(s) 118, 167, 407
Hpy166II GTNNAC 1 cut(s) 398
Hpy188I TCNGA 2 cut(s) 481, 504
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 173, 401
HpyCH4III ACNGT 2 cut(s) 167, 236
HpyCH4V TGCA 5 cut(s) 48, 63, 216, 249, 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 432
HpyF3I CTNAG 3 cut(s) 93, 501, 515
Hsp92II CATG 2 cut(s) 299, 308
Kzo9I GATC 2 cut(s) 190, 504
LguI GCTCTTC 2 cut(s) 335, 504
LmnI GCTCC 1 cut(s) 282
LpnPI CCDG 3 cut(s) 82, 196, 478
LweI GCATC 2 cut(s) 35, 121
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 2 cut(s) 195, 319
MalI GATC 2 cut(s) 192, 506
MboI GATC 2 cut(s) 190, 504
MboII GAAGA 3 cut(s) 352, 368, 521
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 3 cut(s) 99, 287, 347
MluCI AATT 2 cut(s) 49, 442
MlyI GAGTC 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 7 cut(s) 93, 126, 136, 252, 252, 292, 510
MseI TTAA 1 cut(s) 520
Mva1269I GAATGC 2 cut(s) 428, 437
MvnI CGCG 1 cut(s) 268
MwoI GCNNNNNNNGC 2 cut(s) 222, 432
NdeII GATC 2 cut(s) 190, 504
NlaIII CATG 2 cut(s) 299, 308
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 2 cut(s) 195, 319
PciSI GCTCTTC 2 cut(s) 335, 504
PctI GAATGC 2 cut(s) 428, 437
PleI GAGTC 1 cut(s) 278
PpsI GAGTC 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 192
PsuI RGATCY 1 cut(s) 190
SapI GCTCTTC 2 cut(s) 335, 504
SaqAI TTAA 1 cut(s) 520
Sau3AI GATC 2 cut(s) 190, 504
SchI GAGTC 1 cut(s) 279
SduI GDGCHC 3 cut(s) 99, 287, 347
SetI ASST 9 cut(s) 85, 126, 131, 153, 157, 263, 478, 497, 516
SfaNI GCATC 2 cut(s) 35, 121
SfcI CTRYAG 1 cut(s) 471
Sse9I AATT 2 cut(s) 49, 442
SsiI CCGC 3 cut(s) 266, 393, 426
SspI AATATT 1 cut(s) 21
SspMI CTAG 1 cut(s) 152
StyI CCWWGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 167, 236
TaqI TCGA 2 cut(s) 451, 507
TasI AATT 2 cut(s) 49, 442
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TseFI GTSAC 2 cut(s) 195, 319
Tsp45I GTSAC 2 cut(s) 195, 319
TspDTI ATGAA 2 cut(s) 44, 147
TspGWI ACGGA 2 cut(s) 183, 471
XapI RAATTY 1 cut(s) 442
XmaJI CCTAGG 1 cut(s) 151
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.