Rh7CG422900

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000226
Physical Location & Seq
Forward (+)
54759285 .. 54759863
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG422900.1

Sequence Viewer

Length: 579 bp
ATGTGCCGTTTTCTTGTGGAGTTAGTAATTCGACATTCTGAAGAAGTGAGACCAACTATCTTGTGGCATTTATCAACCATCGTTTCAGTGTTTTTTTTCTCATATTTGAATAAGATCCTAATGCTTATCCTTCTGCTTTATTTGCAAGGAGTGCAATTTTATCTTTGTATTGCATGTGTTAAATTATCTCCTACTGCTAGGCACCGGTACGACGAGCATCCTCTCAAGCTCGCTTATGCTAGCATTGAACACGAGCTAGGTGAACATTATTGTGAAATATGTGTAGGAACACGAGATCCGACACATTGGTTCTACCAGTGCGATGATTGTGAGTTTGATCGTCATCCTCATTGCATTCTAGGGAGATATCCACGAGTTAATTTAGGGAGTGCCTGCAAGCACGACGCTCATGTCCCACCCCTTGTCATCCTTGTTAGTAAGTCAAGGAGCTCCATTCCGTTTGATAAGAGTGACAACATCCGTCCTTGTGAGGAGTGCGGTAAAGATTACATAGGATTGTTCTTTGAATGTAGAGAGTACAATACCCACCGTGAAGGATGTTGCCGGATTATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

192

Amino Acids

22.5

Weight (kDa)

6.44

Isoelectric Point (pI)

54.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 69 - 119 7.5e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 1 cut(s) 498
AclWI GGATC 2 cut(s) 109, 290
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 2 cut(s) 209, 539
AgeI ACCGGT 1 cut(s) 204
AgsI TTSAA 3 cut(s) 109, 248, 527
AloI GAACNNNNNNTCC 2 cut(s) 280, 312
AluBI AGCT 3 cut(s) 229, 256, 450
AluI AGCT 3 cut(s) 229, 256, 450
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 43
AlwI GGATC 2 cut(s) 109, 290
AsiGI ACCGGT 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 272
AsuNHI GCTAGC 1 cut(s) 239
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 452
BauI CACGAG 3 cut(s) 251, 291, 372
Bbv12I GWGCWC 1 cut(s) 452
BccI CCATC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 43
BfaI CTAG 4 cut(s) 198, 240, 257, 359
BmiI GGNNCC 1 cut(s) 203
BmsI GCATC 1 cut(s) 226
BmtI GCTAGC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 43
BsaWI WCCGGW 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 1 cut(s) 349
Bse8I GATNNNNATC 1 cut(s) 342
BseGI GGATG 5 cut(s) 217, 343, 426, 477, 563
BseJI GATNNNNATC 1 cut(s) 342
BseMI GCAATG 1 cut(s) 349
BseNI ACTGG 1 cut(s) 316
BseRI GAGGAG 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 201
BshTI ACCGGT 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 2 cut(s) 205, 565
BslFI GGGAC 1 cut(s) 398
BsmAI GTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 452
Bsp143I GATC 3 cut(s) 114, 295, 337
BspACI CCGC 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 203
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 2 cut(s) 109, 290
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 204
BsrI ACTGG 1 cut(s) 316
BssAI RCCGGY 1 cut(s) 204
BssMI GATC 3 cut(s) 114, 295, 337
BssSI CACGAG 3 cut(s) 251, 291, 372
Bst2BI CACGAG 3 cut(s) 251, 291, 372
Bst4CI ACNGT 1 cut(s) 551
BstAPI GCANNNNNTGC 1 cut(s) 151
BstC8I GCNNGC 4 cut(s) 231, 241, 394, 398
BstF5I GGATG 5 cut(s) 217, 343, 426, 477, 563
BstKTI GATC 3 cut(s) 117, 298, 340
BstMAI GTCTC 1 cut(s) 43
BstMBI GATC 3 cut(s) 114, 295, 337
BstMWI GCNNNNNNNGC 2 cut(s) 142, 151
BstNSI RCATGY 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 114, 295
BstYI RGATCY 2 cut(s) 114, 295
BtgZI GCGATG 1 cut(s) 336
BtsCI GGATG 5 cut(s) 217, 343, 426, 477, 563
BtsIMutI CAGTG 2 cut(s) 93, 323
Cac8I GCNNGC 4 cut(s) 231, 241, 394, 398
Cfr10I RCCGGY 1 cut(s) 204
CseI GACGC 1 cut(s) 413
Csp6I GTAC 2 cut(s) 208, 538
CspAI ACCGGT 1 cut(s) 204
CviAII CATG 2 cut(s) 174, 410
CviJI RGCY 3 cut(s) 229, 256, 450
CviKI_1 RGCY 3 cut(s) 229, 256, 450
CviQI GTAC 2 cut(s) 208, 538
DpnI GATC 3 cut(s) 116, 297, 339
DpnII GATC 3 cut(s) 114, 295, 337
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 452
Eco31I GGTCTC 1 cut(s) 43
Eco32I GATATC 1 cut(s) 368
Eco53kI GAGCTC 1 cut(s) 450
Eco57I CTGAAG 1 cut(s) 60
EcoICRI GAGCTC 1 cut(s) 450
EcoRV GATATC 1 cut(s) 368
EcoT38I GRGCYC 1 cut(s) 452
FaeI CATG 2 cut(s) 177, 413
FaiI YATR 7 cut(s) 103, 175, 237, 280, 411, 512, 572
FaqI GGGAC 1 cut(s) 398
FatI CATG 2 cut(s) 173, 409
FokI GGATG 5 cut(s) 204, 330, 413, 464, 570
FriOI GRGCYC 1 cut(s) 452
FspBI CTAG 4 cut(s) 198, 240, 257, 359
HapII CCGG 2 cut(s) 205, 565
HgaI GACGC 1 cut(s) 413
Hin1II CATG 2 cut(s) 177, 413
HpaII CCGG 2 cut(s) 205, 565
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 40, 300
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 2 cut(s) 215, 407
HpyAV CCTTC 2 cut(s) 140, 548
HpyCH4III ACNGT 1 cut(s) 551
HpyCH4V TGCA 5 cut(s) 145, 154, 173, 354, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 151
Hsp92II CATG 2 cut(s) 177, 413
Kzo9I GATC 3 cut(s) 114, 295, 337
LmnI GCTCC 2 cut(s) 447, 455
LpnPI CCDG 3 cut(s) 218, 329, 406
LweI GCATC 1 cut(s) 226
MaeI CTAG 4 cut(s) 198, 240, 257, 359
MaeIII GTNAC 1 cut(s) 470
MalI GATC 3 cut(s) 116, 297, 339
MboI GATC 3 cut(s) 114, 295, 337
MboII GAAGA 1 cut(s) 53
MflI RGATCY 2 cut(s) 114, 295
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 4 cut(s) 27, 155, 182, 379
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 3 cut(s) 231, 357, 484
MseI TTAA 2 cut(s) 180, 378
MslI CAYNNNNRTG 1 cut(s) 270
MspI CCGG 2 cut(s) 205, 565
Mva1269I GAATGC 1 cut(s) 354
MwoI GCNNNNNNNGC 2 cut(s) 142, 151
NdeII GATC 3 cut(s) 114, 295, 337
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 177, 413
NlaIV GGNNCC 1 cut(s) 203
NmuCI GTSAC 1 cut(s) 470
NspI RCATGY 1 cut(s) 177
PctI GAATGC 1 cut(s) 354
PinAI ACCGGT 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 452
PspN4I GGNNCC 1 cut(s) 203
PsuI RGATCY 2 cut(s) 114, 295
RsaI GTAC 2 cut(s) 209, 539
RsaNI GTAC 2 cut(s) 208, 538
RseI CAYNNNNRTG 1 cut(s) 270
SacI GAGCTC 1 cut(s) 452
SaqAI TTAA 2 cut(s) 180, 378
Sau3AI GATC 3 cut(s) 114, 295, 337
SduI GDGCHC 1 cut(s) 452
SetI ASST 4 cut(s) 231, 258, 262, 452
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 4 cut(s) 27, 155, 182, 379
SsiI CCGC 1 cut(s) 498
SspMI CTAG 4 cut(s) 198, 240, 257, 359
SstI GAGCTC 1 cut(s) 452
TaaI ACNGT 1 cut(s) 551
TaqI TCGA 1 cut(s) 31
TasI AATT 4 cut(s) 27, 155, 182, 379
TatI WGTACW 1 cut(s) 537
Tru1I TTAA 2 cut(s) 180, 378
Tru9I TTAA 2 cut(s) 180, 378
TscAI CASTG 2 cut(s) 93, 323
TseFI GTSAC 1 cut(s) 470
Tsp45I GTSAC 1 cut(s) 470
TspGWI ACGGA 2 cut(s) 447, 470
TspRI CASTG 2 cut(s) 93, 323
XceI RCATGY 1 cut(s) 177
XcmI CCANNNNNNNNNTGG 1 cut(s) 60
XspI CTAG 4 cut(s) 198, 240, 257, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.