RLG00000027637

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000226
Physical Location & Seq
Reverse (-)
13404079 .. 13406599
2521 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027637

Sequence Viewer

Length: 2415 bp
ATGGAAGAGAAATCAAATATGGATGAGCAGCAGCTTACACACTTCAGTCATGAGCATCCATTGATGCTCAAGGAACAATATGATGGTCCACCAGTTTCATGCGAGGCATGTGAAGATCCAGTGCTAGGTCCTTACTACAATTGCAACCAATGTTCCAACAAATTCATTCTCCATAAGTCATGTGCGCAGCTACCGAGGCAGATCCTCCACCACCCTTTGCACAGCAAGCACCCACTTAGAGTTAGGACGAAGAGGTCAAGAAGCACAGACACGGACTGTATAGTACATTTCAGTCACAAGCATCTATTGAACTTGAGTACTGAAAATCAATCTGAAGAGGGACCACCAGTCTTTTGTACTGGGTGCTTAGAGCAAGTGGTTGGTCCTAGATACATTTGCAAATTGGGTGTGATGAGGGAGAGAAGCTGCTCATCCATTGTTCTGCATCAATCTTGTGCGAAGCTAGATCGTGTGAACAAGCACCCGATGCACCGCCAACACCCACTTACTCTCAATCTAAATGGAGCCCGAGAATCCCACTGTGATGCTTGTGACAAAGATTGCAGCCGCAGATTCAGTTACAGTTGTTTCCGATGTGACTTCAACATTGACCTCAACTGTGCTTCCGAGAAAGGCTTCGAACATTTCAGTCACAACCATCCATTAATGTTCAAGAAGCTGGGAGCGAGACAAAAAAAAAAAAAAGAGTCTGTTCCATTAGTTATTTGCGATGCTTGCCAGGACCCGATAGTTGGCCCTAGTTACACTTGCATCAATACCTACCTACGTCGCAAATGCTGCTTCAATCTCCACAAGTCATGTGCAGAGTTACCCGTTGAGATCCAGCACCCGGTGCACCATCAACACCCACTTTTTCTGCTCAATACATTTCCAATTCAAAAAATCAAAGTTCGTTGCTCATGTAATGCCTGCAATCAACCTTGTATATACCGCTACAGCTGCTTCACATGTGATTTCAACCTTGACCTCAAATGTGCCTCCAATTGGCAAAAAATTATCGAAAATGAATCTCATGAGCATCAATTTACGGTCCCCCGTAAGGAAATGACCCAGCTCCACCTTACATGTGACGTTTGTGGGGAGTTCCGGAGTGACACAGACTACTACGTCTGTGGCATCTGCCAGCTCTGGGTCCATAAGGAATGTGCTTCATTTCCACGCGACACCAAAATACCCGGCCACCAACACAGCCTCAAGCTAACCTGGTTCCTTGAAGACATTTACCCCAAGGACCAGGTTTGTATAATCTGCTCTACAAATATTGATAAGTGTCGTACTGTATATTATTGTCAGGAATGTTGCGGTTATGTTGCCCACACTACATGCATATTCCAGAAAGAAGAAGACCAAGACAGTACCGTTAATATTGAAGATGATGATTTTAAGTCTGGTGATGCTGGGGAGATCAAACACTTCAGTCATCAACATCCTTTAGTCGCTAATAAGGTTTCGCGATGGACACATGTTAGCAGAGCTCATTTTGACTCTGGTTATCATCAATGTGAGGGTTGCATTCGACCCATCATTAGTAAAGACTTCTACAGCTGTACTAGACAAGAAGAAGAGTCTTGCCATTTCTATCTCCACAAAACATGTGCCCGGTTACCAGAAAAGATGATTCTCCCTTTGCTTGACCAACAGCAGTTCATACTCCACTCTCGGGCTCCTTCTATTGACGAGGTGTTTCAGTGTTATATGTGTGGTATCTTTCACCAAGGCTTTGTATACTGTTGTGCTTTGCCAAAGGGCGAAAAACCTGTTTACCTTGACCCTGAGTGCAGTATTTATTGGGAAAACAGGGATCTTAAACACGAGTCTCATGCTCACCGCCTCCTCCTCGACTGGGAGGACGTCCATTGCAGGGGTTGTGGTTCAAAAATAATTTTCTGCTTCAGTTGTAAGAGATGCAATTTTCATCTTTGCACAGCCTGTGTTAGATTACCTCTTACTGCTGAGCACCAATACGACACGCATCCTCTAAAGCTGACCTATGAAAGTATTGAAGACGACCTAGGTGAATACTACTGTGAGATATGTGAAGGAAAAAGGGATCCAGCACATTGGTTCTACTGGTGCAAGGAGTGCGAGTTTGATTGTCATCCTCATTGCATCATGAGGAGGTATCCACGAGTCAAGTTGGAGAGGAATTACAAGCACGAGGCTCATGTCCAACACCCCGTCACTCTTGTCAGCAAGTGGAAGAGCCCCATTCCGGGCGATAAGAGAGACAACATTCTTCCTTGTGAGAAGTGCTGTGAACTTTGCCAAGGATTAGTATTTGAATGCAGAGAGTGCAATATCAATTTCCATCGAGACGGATGTTGTGGAACTACAGATTCGGAAATAAGTTCTCACAGGTCTCCTCAGATCGAAGAGCTTAGCTCTTGTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

805

Amino Acids

93.6

Weight (kDa)

6.68

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 15 - 62 1.4e-09 C1 domain
C1_2 PF03107 163 - 208 1e-08 C1 domain
C1_2 PF03107 286 - 333 3e-06 C1 domain
C1_2 PF03107 400 - 450 7.2e-07 C1 domain
C1_2 PF03107 662 - 711 2.4e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 253, 1127
AatII GACGTC 1 cut(s) 1875
Acc16I TGCGCA 1 cut(s) 186
AccI GTMKAC 1 cut(s) 1746
AccII CGCG 2 cut(s) 1182, 1474
AccIII TCCGGA 1 cut(s) 1107
AciI CCGC 5 cut(s) 493, 568, 952, 1323, 1849
AclWI GGATC 6 cut(s) 110, 196, 835, 1830, 2066, 2079
AcoI YGGCCR 1 cut(s) 1198
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 4 cut(s) 28, 354, 1420, 1897
AcyI GRCGYC 1 cut(s) 1872
AdeI CACNNNGTG 1 cut(s) 853
AfaI GTAC 6 cut(s) 285, 319, 358, 1297, 1378, 1570
AflIII ACRYGT 4 cut(s) 968, 1085, 1483, 1613
AhdI GACNNNNNGTC 1 cut(s) 347
AjnI CCWGG 3 cut(s) 738, 1223, 1254
Alw21I GWGCWC 3 cut(s) 858, 1498, 1980
Alw26I GTCTC 5 cut(s) 682, 1842, 2241, 2328, 2385
Alw44I GTGCAC 1 cut(s) 854
AlwI GGATC 6 cut(s) 110, 196, 835, 1830, 2066, 2079
Ama87I CYCGRG 2 cut(s) 528, 1680
Aor13HI TCCGGA 1 cut(s) 1107
AoxI GGCC 2 cut(s) 754, 1198
ApaLI GTGCAC 1 cut(s) 854
ApeKI GCWGC 7 cut(s) 28, 31, 187, 426, 564, 798, 960
ApoI RAATTY 1 cut(s) 161
AseI ATTAAT 1 cut(s) 665
Asp700I GAANNNNTTC 1 cut(s) 635
AspA2I CCTAGG 1 cut(s) 2032
AspLEI GCGC 1 cut(s) 187
AspS9I GGNCC 9 cut(s) 86, 128, 341, 383, 742, 755, 1051, 1153, 1252
AsuC2I CCSGG 4 cut(s) 851, 1197, 1621, 2235
AsuHPI GGTGA 4 cut(s) 1424, 1724, 1838, 2048
AsuII TTCGAA 1 cut(s) 639
AvaI CYCGRG 2 cut(s) 528, 1680
AvaII GGWCC 8 cut(s) 86, 128, 341, 383, 742, 1051, 1153, 1252
AvrII CCTAGG 1 cut(s) 2032
BaeGI GKGCMC 2 cut(s) 858, 1621
BamHI GGATCC 1 cut(s) 2071
BanII GRGCYC 4 cut(s) 529, 1498, 1687, 2228
BauI CACGAG 3 cut(s) 1832, 2148, 2177
BbsI GAAGAC 3 cut(s) 1242, 1371, 2031
Bbv12I GWGCWC 3 cut(s) 858, 1498, 1980
BbvI GCAGC 7 cut(s) 40, 43, 199, 413, 576, 785, 947
BccI CCATC 6 cut(s) 77, 666, 867, 1470, 1550, 2337
BcgI CGANNNNNNTGC 2 cut(s) 1823, 1857
BciT130I CCWGG 3 cut(s) 740, 1225, 1256
BciVI GTATCC 1 cut(s) 2154
BcnI CCSGG 4 cut(s) 851, 1197, 1621, 2235
BcoDI GTCTC 5 cut(s) 682, 1842, 2241, 2328, 2385
BfaI CTAG 6 cut(s) 125, 387, 464, 759, 1572, 2033
BfmI CTRYAG 3 cut(s) 955, 1561, 2352
BfuI GTATCC 1 cut(s) 2154
BisI GCNGC 8 cut(s) 29, 32, 188, 427, 565, 568, 799, 961
BlnI CCTAGG 1 cut(s) 2032
BlpI GCTNAGC 2 cut(s) 1974, 2399
BlsI GCNGC 8 cut(s) 30, 33, 189, 428, 566, 569, 800, 962
BmcAI AGTACT 1 cut(s) 319
Bme1390I CCNGG 7 cut(s) 740, 851, 1197, 1225, 1256, 1621, 2235
Bme18I GGWCC 8 cut(s) 86, 128, 341, 383, 742, 1051, 1153, 1252
BmeRI GACNNNNNGTC 1 cut(s) 347
BmeT110I CYCGRG 2 cut(s) 528, 1680
BmgT120I GGNCC 9 cut(s) 86, 128, 341, 383, 742, 755, 1051, 1153, 1252
BmiI GGNNCC 8 cut(s) 342, 526, 744, 1053, 1154, 1229, 1686, 2073
BmrFI CCNGG 7 cut(s) 740, 851, 1197, 1225, 1256, 1621, 2235
BmrI ACTGGG 2 cut(s) 369, 1873
BmuI ACTGGG 2 cut(s) 369, 1873
BpiI GAAGAC 3 cut(s) 1242, 1371, 2031
BplI GAGNNNNNCTC 1 cut(s) 2387
Bpu1102I GCTNAGC 2 cut(s) 1974, 2399
Bpu14I TTCGAA 1 cut(s) 639
BpuEI CTTGAG 3 cut(s) 53, 334, 1199
BpuMI CCSGG 4 cut(s) 851, 1197, 1621, 2235
BsaBI GATNNNNATC 1 cut(s) 2118
BsaHI GRCGYC 1 cut(s) 1872
BsaI GGTCTC 1 cut(s) 2385
BsaJI CCNNGG 5 cut(s) 194, 1248, 1735, 2032, 2287
BsaWI WCCGGW 1 cut(s) 1107
BsaXI ACNNNNNCTCC 2 cut(s) 2093, 2123
Bse1I ACTGG 6 cut(s) 92, 119, 347, 364, 1868, 2096
Bse3DI GCAATG 2 cut(s) 1876, 2125
Bse8I GATNNNNATC 1 cut(s) 2118
BseAI TCCGGA 1 cut(s) 1107
BseBI CCWGG 3 cut(s) 740, 1225, 1256
BseDI CCNNGG 5 cut(s) 194, 1248, 1735, 2032, 2287
BseGI GGATG 8 cut(s) 28, 55, 431, 658, 1447, 1993, 2119, 2345
BseJI GATNNNNATC 1 cut(s) 2118
BseMI GCAATG 2 cut(s) 1876, 2125
BseMII CTCAG 3 cut(s) 1785, 1965, 2399
BseNI ACTGG 6 cut(s) 92, 119, 347, 364, 1868, 2096
BseRI GAGGAG 4 cut(s) 1844, 1847, 2152, 2373
BseSI GKGCMC 2 cut(s) 858, 1621
BseXI GCAGC 7 cut(s) 40, 43, 199, 413, 576, 785, 947
BseYI CCCAGC 3 cut(s) 679, 1071, 1418
BsgI GTGCAG 2 cut(s) 843, 1819
Bsh1236I CGCG 2 cut(s) 1182, 1474
BshFI GGCC 2 cut(s) 756, 1200
BsiHKAI GWGCWC 3 cut(s) 858, 1498, 1980
BsiHKCI CYCGRG 2 cut(s) 528, 1680
BsiSI CCGG 5 cut(s) 851, 1108, 1197, 1621, 2234
BslFI GGGAC 3 cut(s) 354, 1037, 2394
BsmAI GTCTC 5 cut(s) 682, 1842, 2241, 2328, 2385
BsmBI CGTCTC 1 cut(s) 2328
BsmFI GGGAC 3 cut(s) 354, 1037, 2394
BsmI GAATGC 2 cut(s) 1533, 2309
BsnI GGCC 2 cut(s) 756, 1200
Bso31I GGTCTC 1 cut(s) 2385
BsoBI CYCGRG 2 cut(s) 528, 1680
Bsp119I TTCGAA 1 cut(s) 639
Bsp1286I GDGCHC 7 cut(s) 529, 858, 1498, 1621, 1687, 1980, 2228
Bsp13I TCCGGA 1 cut(s) 1107
Bsp143I GATC 8 cut(s) 115, 201, 466, 840, 1425, 1822, 2071, 2388
Bsp1720I GCTNAGC 2 cut(s) 1974, 2399
Bsp68I TCGCGA 1 cut(s) 1474
BspACI CCGC 5 cut(s) 493, 568, 952, 1323, 1849
BspANI GGCC 2 cut(s) 756, 1200
BspCNI CTCAG 3 cut(s) 1786, 1966, 2398
BspEI TCCGGA 1 cut(s) 1107
BspFNI CGCG 2 cut(s) 1182, 1474
BspHI TCATGA 3 cut(s) 49, 1033, 2133
BspLI GGNNCC 8 cut(s) 342, 526, 744, 1053, 1154, 1229, 1686, 2073
BspPI GGATC 6 cut(s) 110, 196, 835, 1830, 2066, 2079
BspQI GCTCTTC 2 cut(s) 2216, 2388
BspT104I TTCGAA 1 cut(s) 639
BspTNI GGTCTC 1 cut(s) 2385
BsrDI GCAATG 2 cut(s) 1876, 2125
BsrI ACTGG 6 cut(s) 92, 119, 347, 364, 1868, 2096
BssECI CCNNGG 5 cut(s) 194, 1248, 1735, 2032, 2287
BssMI GATC 8 cut(s) 115, 201, 466, 840, 1425, 1822, 2071, 2388
BssNAI GTATAC 1 cut(s) 1747
BssNI GRCGYC 1 cut(s) 1872
BssSI CACGAG 3 cut(s) 1832, 2148, 2177
BssT1I CCWWGG 4 cut(s) 1248, 1735, 2032, 2287
Bst1107I GTATAC 1 cut(s) 1747
Bst2BI CACGAG 3 cut(s) 1832, 2148, 2177
Bst2UI CCWGG 3 cut(s) 740, 1225, 1256
Bst6I CTCTTC 5 cut(s) 245, 330, 1578, 2216, 2388
BstACI GRCGYC 1 cut(s) 1872
BstAPI GCANNNNNTGC 5 cut(s) 487, 798, 853, 2103, 2313
BstBI TTCGAA 1 cut(s) 639
BstC8I GCNNGC 4 cut(s) 227, 736, 931, 1145
BstDEI CTNAG 6 cut(s) 236, 367, 1794, 1974, 2385, 2399
BstEII GGTNACC 1 cut(s) 1623
BstF5I GGATG 8 cut(s) 28, 55, 431, 658, 1447, 1993, 2119, 2345
BstFNI CGCG 2 cut(s) 1182, 1474
BstHHI GCGC 1 cut(s) 187
BstKTI GATC 8 cut(s) 118, 204, 469, 843, 1428, 1825, 2074, 2391
BstMAI GTCTC 5 cut(s) 682, 1842, 2241, 2328, 2385
BstMBI GATC 8 cut(s) 115, 201, 466, 840, 1425, 1822, 2071, 2388
BstMWI GCNNNNNNNGC 9 cut(s) 196, 226, 487, 735, 798, 853, 960, 2103, 2313
BstNI CCWGG 3 cut(s) 740, 1225, 1256
BstNSI RCATGY 6 cut(s) 111, 972, 1089, 1347, 1487, 1617
BstPI GGTNACC 1 cut(s) 1623
BstSCI CCNGG 7 cut(s) 738, 849, 1195, 1223, 1254, 1619, 2233
BstSFI CTRYAG 3 cut(s) 955, 1561, 2352
BstSLI GKGCMC 2 cut(s) 858, 1621
BstUI CGCG 2 cut(s) 1182, 1474
BstV1I GCAGC 7 cut(s) 40, 43, 199, 413, 576, 785, 947
BstV2I GAAGAC 3 cut(s) 1242, 1371, 2031
BstX2I RGATCY 5 cut(s) 115, 201, 840, 1822, 2071
BstXI CCANNNNNNTGG 1 cut(s) 2082
BstYI RGATCY 5 cut(s) 115, 201, 840, 1822, 2071
BstZ17I GTATAC 1 cut(s) 1747
BsuI GTATCC 1 cut(s) 2154
BsuRI GGCC 2 cut(s) 756, 1200
BtgZI GCGATG 2 cut(s) 744, 1489
BtsCI GGATG 8 cut(s) 28, 55, 431, 658, 1447, 1993, 2119, 2345
BtsIMutI CAGTG 3 cut(s) 126, 538, 1715
BtuMI TCGCGA 1 cut(s) 1474
Cac8I GCNNGC 4 cut(s) 227, 736, 931, 1145
CciI TCATGA 3 cut(s) 49, 1033, 2133
CfoI GCGC 1 cut(s) 187
Cfr13I GGNCC 9 cut(s) 86, 128, 341, 383, 742, 755, 1051, 1153, 1252
CsiI ACCWGGT 2 cut(s) 1223, 1254
Csp6I GTAC 6 cut(s) 284, 318, 357, 1296, 1377, 1569
CviQI GTAC 6 cut(s) 284, 318, 357, 1296, 1377, 1569
DdeI CTNAG 6 cut(s) 236, 367, 1794, 1974, 2385, 2399
DpnI GATC 8 cut(s) 117, 203, 468, 842, 1427, 1824, 2073, 2390
DpnII GATC 8 cut(s) 115, 201, 466, 840, 1425, 1822, 2071, 2388
DraIII CACNNNGTG 1 cut(s) 853
DrdI GACNNNNNNGTC 2 cut(s) 253, 1127
DriI GACNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 2 cut(s) 253, 1127
EaeI YGGCCR 1 cut(s) 1198
Eam1104I CTCTTC 5 cut(s) 245, 330, 1578, 2216, 2388
Eam1105I GACNNNNNGTC 1 cut(s) 347
EarI CTCTTC 5 cut(s) 245, 330, 1578, 2216, 2388
Ecl136II GAGCTC 1 cut(s) 1496
Eco130I CCWWGG 4 cut(s) 1248, 1735, 2032, 2287
Eco24I GRGCYC 4 cut(s) 529, 1498, 1687, 2228
Eco31I GGTCTC 1 cut(s) 2385
Eco47I GGWCC 8 cut(s) 86, 128, 341, 383, 742, 1051, 1153, 1252
Eco53kI GAGCTC 1 cut(s) 1496
Eco57I CTGAAG 4 cut(s) 28, 354, 1420, 1897
Eco88I CYCGRG 2 cut(s) 528, 1680
Eco91I GGTNACC 1 cut(s) 1623
EcoICRI GAGCTC 1 cut(s) 1496
EcoO109I RGGNCCY 2 cut(s) 128, 742
EcoO65I GGTNACC 1 cut(s) 1623
EcoRII CCWGG 3 cut(s) 738, 1223, 1254
EcoT14I CCWWGG 4 cut(s) 1248, 1735, 2032, 2287
EcoT22I ATGCAT 1 cut(s) 1349
EcoT38I GRGCYC 4 cut(s) 529, 1498, 1687, 2228
ErhI CCWWGG 4 cut(s) 1248, 1735, 2032, 2287
Esp3I CGTCTC 1 cut(s) 2328
FaqI GGGAC 3 cut(s) 354, 1037, 2394
FblI GTMKAC 1 cut(s) 1746
Fnu4HI GCNGC 8 cut(s) 29, 32, 188, 427, 565, 568, 799, 961
FokI GGATG 8 cut(s) 35, 42, 418, 645, 1434, 1980, 2106, 2352
FriOI GRGCYC 4 cut(s) 529, 1498, 1687, 2228
Fsp4HI GCNGC 8 cut(s) 29, 32, 188, 427, 565, 568, 799, 961
FspBI CTAG 6 cut(s) 125, 387, 464, 759, 1572, 2033
FspI TGCGCA 1 cut(s) 186
GlaI GCGC 1 cut(s) 186
GluI GCNGC 8 cut(s) 29, 32, 188, 427, 565, 568, 799, 961
GsaI CCCAGC 3 cut(s) 683, 1075, 1422
HaeIII GGCC 2 cut(s) 756, 1200
HapII CCGG 5 cut(s) 851, 1108, 1197, 1621, 2234
HhaI GCGC 1 cut(s) 187
Hin1I GRCGYC 1 cut(s) 1872
Hin6I GCGC 1 cut(s) 185
HinP1I GCGC 1 cut(s) 185
HpaII CCGG 5 cut(s) 851, 1108, 1197, 1621, 2234
HphI GGTGA 4 cut(s) 1424, 1724, 1838, 2048
Hpy166II GTNNAC 6 cut(s) 89, 475, 856, 1747, 1783, 2279
Hpy188I TCNGA 5 cut(s) 334, 593, 628, 2362, 2388
Hpy8I GTNNAC 6 cut(s) 89, 475, 856, 1747, 1783, 2279
Hpy99I CGWCG 1 cut(s) 792
HpyAV CCTTC 2 cut(s) 1698, 2054
HpyCH4IV ACGT 4 cut(s) 787, 1092, 1128, 1872
HpyF10VI GCNNNNNNNGC 9 cut(s) 196, 226, 487, 735, 798, 853, 960, 2103, 2313
HpyF3I CTNAG 6 cut(s) 236, 367, 1794, 1974, 2385, 2399
HpySE526I ACGT 4 cut(s) 787, 1092, 1128, 1872
Hsp92I GRCGYC 1 cut(s) 1872
HspAI GCGC 1 cut(s) 185
Kpn2I TCCGGA 1 cut(s) 1107
Kzo9I GATC 8 cut(s) 115, 201, 466, 840, 1425, 1822, 2071, 2388
LguI GCTCTTC 2 cut(s) 2216, 2388
LmnI GCTCC 4 cut(s) 524, 683, 1080, 1690
Lsp1109I GCAGC 7 cut(s) 40, 43, 199, 413, 576, 785, 947
MabI ACCWGGT 2 cut(s) 1223, 1254
MaeI CTAG 6 cut(s) 125, 387, 464, 759, 1572, 2033
MaeII ACGT 4 cut(s) 787, 1092, 1128, 1872
MalI GATC 8 cut(s) 117, 203, 468, 842, 1427, 1824, 2073, 2390
MboI GATC 8 cut(s) 115, 201, 466, 840, 1425, 1822, 2071, 2388
MfeI CAATTG 2 cut(s) 139, 1003
MflI RGATCY 5 cut(s) 115, 201, 840, 1822, 2071
MhlI GDGCHC 7 cut(s) 529, 858, 1498, 1621, 1687, 1980, 2228
MlyI GAGTC 5 cut(s) 716, 1499, 1595, 1844, 2160
MmeI TCCRAC 3 cut(s) 180, 2139, 2215
Mph1103I ATGCAT 1 cut(s) 1349
MroI TCCGGA 1 cut(s) 1107
MroXI GAANNNNTTC 1 cut(s) 635
MseI TTAA 4 cut(s) 665, 1383, 1404, 1827
MslI CAYNNNNRTG 2 cut(s) 543, 1521
MspA1I CMGCKG 2 cut(s) 960, 1566
MspI CCGG 5 cut(s) 851, 1108, 1197, 1621, 2234
MspR9I CCNGG 7 cut(s) 740, 851, 1197, 1225, 1256, 1621, 2235
MunI CAATTG 2 cut(s) 139, 1003
Mva1269I GAATGC 2 cut(s) 1533, 2309
MvaI CCWGG 3 cut(s) 740, 1225, 1256
MvnI CGCG 2 cut(s) 1182, 1474
MwoI GCNNNNNNNGC 9 cut(s) 196, 226, 487, 735, 798, 853, 960, 2103, 2313
NciI CCSGG 4 cut(s) 851, 1197, 1621, 2235
NdeII GATC 8 cut(s) 115, 201, 466, 840, 1425, 1822, 2071, 2388
NlaIV GGNNCC 8 cut(s) 342, 526, 744, 1053, 1154, 1229, 1686, 2073
NmuCI GTSAC 7 cut(s) 293, 551, 596, 650, 1088, 1112, 2200
NruI TCGCGA 1 cut(s) 1474
NsbI TGCGCA 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 1349
NspI RCATGY 6 cut(s) 111, 972, 1089, 1347, 1487, 1617
NspV TTCGAA 1 cut(s) 639
PagI TCATGA 3 cut(s) 49, 1033, 2133
PciI ACATGT 4 cut(s) 968, 1085, 1483, 1613
PciSI GCTCTTC 2 cut(s) 2216, 2388
PctI GAATGC 2 cut(s) 1533, 2309
PdmI GAANNNNTTC 1 cut(s) 635
PfeI GAWTC 5 cut(s) 533, 573, 1028, 1639, 2357
PkrI GCNGC 8 cut(s) 30, 33, 189, 428, 566, 569, 800, 962
PleI GAGTC 5 cut(s) 715, 1499, 1594, 1843, 2159
PpsI GAGTC 5 cut(s) 715, 1499, 1594, 1843, 2159
PpuMI RGGWCCY 2 cut(s) 128, 742
PscI ACATGT 4 cut(s) 968, 1085, 1483, 1613
PshBI ATTAAT 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 1498
Psp5II RGGWCCY 2 cut(s) 128, 742
Psp6I CCWGG 3 cut(s) 738, 1223, 1254
PspEI GGTNACC 1 cut(s) 1623
PspFI CCCAGC 3 cut(s) 679, 1071, 1418
PspGI CCWGG 3 cut(s) 738, 1223, 1254
PspN4I GGNNCC 8 cut(s) 342, 526, 744, 1053, 1154, 1229, 1686, 2073
PspPI GGNCC 9 cut(s) 86, 128, 341, 383, 742, 755, 1051, 1153, 1252
PspPPI RGGWCCY 2 cut(s) 128, 742
PsuI RGATCY 5 cut(s) 115, 201, 840, 1822, 2071
PvuII CAGCTG 2 cut(s) 960, 1566
RruI TCGCGA 1 cut(s) 1474
RsaI GTAC 6 cut(s) 285, 319, 358, 1297, 1378, 1570
RsaNI GTAC 6 cut(s) 284, 318, 357, 1296, 1377, 1569
RseI CAYNNNNRTG 2 cut(s) 543, 1521
SacI GAGCTC 1 cut(s) 1498
SapI GCTCTTC 2 cut(s) 2216, 2388
SaqAI TTAA 4 cut(s) 665, 1383, 1404, 1827
SatI GCNGC 8 cut(s) 29, 32, 188, 427, 565, 568, 799, 961
Sau3AI GATC 8 cut(s) 115, 201, 466, 840, 1425, 1822, 2071, 2388
Sau96I GGNCC 9 cut(s) 86, 128, 341, 383, 742, 755, 1051, 1153, 1252
ScaI AGTACT 1 cut(s) 319
SchI GAGTC 5 cut(s) 716, 1499, 1595, 1844, 2160
ScrFI CCNGG 7 cut(s) 740, 851, 1197, 1225, 1256, 1621, 2235
SduI GDGCHC 7 cut(s) 529, 858, 1498, 1621, 1687, 1980, 2228
SexAI ACCWGGT 2 cut(s) 1223, 1254
SfcI CTRYAG 3 cut(s) 955, 1561, 2352
SfuI TTCGAA 1 cut(s) 639
SinI GGWCC 8 cut(s) 86, 128, 341, 383, 742, 1051, 1153, 1252
SmiMI CAYNNNNRTG 2 cut(s) 543, 1521
SmlI CTYRAG 3 cut(s) 68, 313, 1214
SmoI CTYRAG 3 cut(s) 68, 313, 1214
SsiI CCGC 5 cut(s) 493, 568, 952, 1323, 1849
SspI AATATT 2 cut(s) 1282, 1387
SspMI CTAG 6 cut(s) 125, 387, 464, 759, 1572, 2033
SstI GAGCTC 1 cut(s) 1498
StyD4I CCNGG 7 cut(s) 738, 849, 1195, 1223, 1254, 1619, 2233
StyI CCWWGG 4 cut(s) 1248, 1735, 2032, 2287
TaiI ACGT 4 cut(s) 790, 1095, 1131, 1875
TaqI TCGA 6 cut(s) 639, 1020, 1537, 1860, 2332, 2391
TatI WGTACW 4 cut(s) 283, 317, 356, 1568
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 5 cut(s) 533, 573, 1028, 1639, 2357
Tru1I TTAA 4 cut(s) 665, 1383, 1404, 1827
Tru9I TTAA 4 cut(s) 665, 1383, 1404, 1827
TscAI CASTG 3 cut(s) 126, 545, 1715
TseFI GTSAC 7 cut(s) 293, 551, 596, 650, 1088, 1112, 2200
TseI GCWGC 7 cut(s) 28, 31, 187, 426, 564, 798, 960
Tsp45I GTSAC 7 cut(s) 293, 551, 596, 650, 1088, 1112, 2200
TspDTI ATGAA 7 cut(s) 87, 154, 1041, 1161, 1657, 1925, 2028
TspGWI ACGGA 2 cut(s) 287, 2352
TspRI CASTG 3 cut(s) 126, 545, 1715
VneI GTGCAC 1 cut(s) 854
VpaK11BI GGWCC 8 cut(s) 86, 128, 341, 383, 742, 1051, 1153, 1252
VspI ATTAAT 1 cut(s) 665
XapI RAATTY 1 cut(s) 161
XceI RCATGY 6 cut(s) 111, 972, 1089, 1347, 1487, 1617
XmaJI CCTAGG 1 cut(s) 2032
XmiI GTMKAC 1 cut(s) 1746
XmnI GAANNNNTTC 1 cut(s) 635
XspI CTAG 6 cut(s) 125, 387, 464, 759, 1572, 2033
ZraI GACGTC 1 cut(s) 1873
ZrmI AGTACT 1 cut(s) 319
Zsp2I ATGCAT 1 cut(s) 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.