AT4G16015

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000226
Physical Location & Seq
Forward (+)
9072908 .. 9074999
2092 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G16015.1

Sequence Viewer

Length: 1608 bp
ATGGAAATAATTGAGGGTCCAAAAGCACATGAGCATCCTTTATTCCTTCTTCCAAAGATGACTATGTTTACTTGTCATTTATGTGGGCTGCAAGATGACCGGTTCCCTTATGCATGTAACTTATGCAATTTGAGTTTTCACAAAGATTGTGCCGAATCCACACCAGAGATGAAGTATTCTTGTCATCCTAAACACATTCTCAAGCGTCTCACACGTGTTCCAAGGTACACAGATGGAAAATGTTGTTTGTGTGAAAACAAACTTCATTACATATTTTATCATTGTTCTATTTGCAATTTCAGTGTGGATATCAATTGTGCAAAGAATCCACTTCCTTCCACTATTGTTCACCTTAAGGCTCATGAGCATTTACTCACCCTTATGCCTCAACGGAATTTTGTTTGTGATGCTTGTGGAATGGATGACGACCCAAATCCATATGTATGTCTTCCATGTAATTTCATGATCCATCAAAATTGTATTGATAAACCAAGCATCATAAAGATTTATCGTCATGATCATCGTCTTTATTACAATCATTGCCTTGACGCTGGAGATTGGAAATGTGGAGTGTGTAATAAAGAGATAAACTGGACATGTGGGGCTTATTCTTGTTCAAAGTGTCCTGATTTTGCCATTCATCCAAGATGTGTCAAAAGGTTTGGCATTTGGGATGGGATTGAACTCGAAGGAATACCAGAAAATAATGTAGAGGTAAAGTCATACGAGGTGATAGAAGAAGGAGAAATAAGGCATTTTAGTCACGAGAAGCATAATTTAAAGCTTCAAGAAGAAAGTGATGCTAATAATGAATGCATGTTGTGTAAAGCATGCAATTATCCTATATATTCTAACTCATTCTACAGTTGCATGGAATGTGATGATTTCATCCTTCATAAAAAATGTGCTGACCTCCCAAAAAAGAAAATAGATCCCTTCTACAACATGTTGACTACTTTAATCACAAATGATATTCGCATAAGCATTTGCAATGCTTGTCAAAACGTTTCTCAAGGTTTTACTTACGTAAGTGATGATCATAAGATTATCTTGGATGTGCGATGCGGTTCTATTTCGGAACCTTTTGTCCATGAAAGTCATCCTCTTCATTCGTTATACATCAGCCGCTCAACAGAAGAAAAGTTTTGTATTGCTTGCGGAGATAAGGCTACTATGGTTTTGAGTTGCGAGGAGTGTGACTTTATTTTAGACATTAAATGTTCTAATTTGCCAAAGATGGTTAAACACAAAAATGATAAAGACCATTTGTTGTCCCTATGTTACGGAGAAAAAACAAGTGAGCAGTACTGGTGCGAGATATGCGAGGAAGCACTAAACGCAAAGAAATGGTTTTATTCATGTGATGATTGTGACATTACTTTTCATATCAAATGTACGCTTGGAGACTTCGTAGGGATGTATCAGGAAGCTAAGGATGAGTCATTCCAAACTTATATGATTCTTAATAATCATATAAATCGACCAGTTTGTTGCTGTTGTGAGTCTCGCTGTCAATTCTCTTCCATCTTAAGGTTTTATGGAAAATTAATATGTTCTCTACAATGTTTGCAAAAGAAGTTCCAAGAATTACATGATGATATATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

535

Amino Acids

62.0

Weight (kDa)

6.02

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 9 - 51 9.3e-09 C1 domain
C1_2 PF03107 61 - 107 2e-07 C1 domain
C1_2 PF03107 120 - 161 8.3e-11 C1 domain
C1_2 PF03107 171 - 218 1.1e-09 C1 domain
C1_2 PF03107 253 - 303 4.5e-11 C1 domain
C1_2 PF03107 366 - 407 4.1e-08 C1 domain
C1_2 PF03107 421 - 465 3.4e-11 C1 domain
C1-like_CT PF22926 486 - 523 5e-10 C1 domain-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1128
AciI CCGC 3 cut(s) 1065, 1126, 1158
AclI AACGTT 1 cut(s) 1005
AclWI GGATC 2 cut(s) 460, 926
AcsI RAATTY 1 cut(s) 394
AcvI CACGTG 1 cut(s) 215
AfaI GTAC 3 cut(s) 227, 1307, 1396
AfiI CCNNNNNNNGG 1 cut(s) 1530
AflII CTTAAG 2 cut(s) 353, 1528
AflIII ACRYGT 4 cut(s) 212, 214, 596, 945
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 3 cut(s) 618, 683, 788
AloI GAACNNNNNNTCC 2 cut(s) 1071, 1103
AluBI AGCT 2 cut(s) 784, 1430
AluI AGCT 2 cut(s) 784, 1430
Alw26I GTCTC 3 cut(s) 212, 1398, 1509
AlwI GGATC 2 cut(s) 460, 926
ApeKI GCWGC 1 cut(s) 88
ApoI RAATTY 1 cut(s) 394
AseI ATTAAT 1 cut(s) 1547
AsiGI ACCGGT 1 cut(s) 99
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 3 cut(s) 341, 367, 742
AvaII GGWCC 1 cut(s) 17
BauI CACGAG 1 cut(s) 764
BbrPI CACGTG 1 cut(s) 215
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 75
BccI CCATC 5 cut(s) 227, 477, 668, 1231, 1532
BclI TGATCA 2 cut(s) 517, 1036
BcoDI GTCTC 3 cut(s) 212, 1398, 1509
BfmI CTRYAG 1 cut(s) 862
BfrI CTTAAG 2 cut(s) 353, 1528
BisI GCNGC 2 cut(s) 89, 1126
BlsI GCNGC 2 cut(s) 90, 1127
BmcAI AGTACT 1 cut(s) 1307
Bme18I GGWCC 1 cut(s) 17
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 3 cut(s) 18, 104, 1080
BmsI GCATC 5 cut(s) 43, 397, 504, 790, 1052
BpiI GAAGAC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 573
Bpu10I CCTNAGC 1 cut(s) 1431
BpuEI CTTGAG 2 cut(s) 185, 996
BsaAI YACGTR 2 cut(s) 215, 1027
BsaJI CCNNGG 1 cut(s) 221
BsaWI WCCGGW 1 cut(s) 99
BsaXI ACNNNNNCTCC 2 cut(s) 1395, 1425
Bsc4I CCNNNNNNNGG 1 cut(s) 1530
Bse118I RCCGGY 1 cut(s) 99
Bse1I ACTGG 3 cut(s) 596, 1313, 1484
Bse3DI GCAATG 2 cut(s) 538, 997
BseDI CCNNGG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 1530
BseMI GCAATG 2 cut(s) 538, 997
BseNI ACTGG 3 cut(s) 596, 1313, 1484
BseRI GAGGAG 1 cut(s) 1205
BseXI GCAGC 1 cut(s) 75
BshTI ACCGGT 1 cut(s) 99
BsiSI CCGG 1 cut(s) 100
BslFI GGGAC 1 cut(s) 1258
BslI CCNNNNNNNGG 1 cut(s) 1530
BsmAI GTCTC 3 cut(s) 212, 1398, 1509
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 1258
BsmI GAATGC 1 cut(s) 818
Bsp143I GATC 4 cut(s) 465, 517, 931, 1036
BspACI CCGC 3 cut(s) 1065, 1126, 1158
BspHI TCATGA 3 cut(s) 361, 462, 514
BspLI GGNNCC 3 cut(s) 18, 104, 1080
BspPI GGATC 2 cut(s) 460, 926
BspTI CTTAAG 2 cut(s) 353, 1528
BsrBI CCGCTC 1 cut(s) 1128
BsrDI GCAATG 2 cut(s) 538, 997
BsrFI RCCGGY 1 cut(s) 99
BsrI ACTGG 3 cut(s) 596, 1313, 1484
BssAI RCCGGY 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 4 cut(s) 465, 517, 931, 1036
BssSI CACGAG 1 cut(s) 764
BssT1I CCWWGG 1 cut(s) 221
Bst2BI CACGAG 1 cut(s) 764
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 2 cut(s) 1110, 1525
BstAFI CTTAAG 2 cut(s) 353, 1528
BstBAI YACGTR 2 cut(s) 215, 1027
BstC8I GCNNGC 2 cut(s) 832, 1156
BstDEI CTNAG 1 cut(s) 1431
BstKTI GATC 4 cut(s) 468, 520, 934, 1039
BstMAI GTCTC 3 cut(s) 212, 1398, 1509
BstMBI GATC 4 cut(s) 465, 517, 931, 1036
BstMWI GCNNNNNNNGC 2 cut(s) 1320, 1337
BstNSI RCATGY 5 cut(s) 117, 600, 820, 834, 949
BstSFI CTRYAG 1 cut(s) 862
BstSNI TACGTA 1 cut(s) 1027
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 931
BstYI RGATCY 1 cut(s) 931
BtgZI GCGATG 1 cut(s) 1075
BtsIMutI CAGTG 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 832, 1156
CciI TCATGA 3 cut(s) 361, 462, 514
Cfr10I RCCGGY 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 17
CseI GACGC 2 cut(s) 194, 557
Csp6I GTAC 3 cut(s) 226, 1306, 1395
CspAI ACCGGT 1 cut(s) 99
CviJI RGCY 7 cut(s) 88, 359, 605, 784, 1125, 1169, 1430
CviKI_1 RGCY 7 cut(s) 88, 359, 605, 784, 1125, 1169, 1430
CviQI GTAC 3 cut(s) 226, 1306, 1395
DdeI CTNAG 1 cut(s) 1431
DpnI GATC 4 cut(s) 467, 519, 933, 1038
DpnII GATC 4 cut(s) 465, 517, 931, 1036
DraI TTTAAA 1 cut(s) 780
Eam1104I CTCTTC 2 cut(s) 1110, 1525
EarI CTCTTC 2 cut(s) 1110, 1525
Eco105I TACGTA 1 cut(s) 1027
Eco130I CCWWGG 1 cut(s) 221
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 17
Eco72I CACGTG 1 cut(s) 215
EcoRV GATATC 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 221
EcoT22I ATGCAT 2 cut(s) 115, 818
ErhI CCWWGG 1 cut(s) 221
Esp3I CGTCTC 1 cut(s) 212
FalI AAGNNNNNCTT 2 cut(s) 1034, 1066
FaqI GGGAC 1 cut(s) 1258
FauNDI CATATG 1 cut(s) 439
FbaI TGATCA 2 cut(s) 517, 1036
Fnu4HI GCNGC 2 cut(s) 89, 1126
Fsp4HI GCNGC 2 cut(s) 89, 1126
GluI GCNGC 2 cut(s) 89, 1126
GsuI CTGGAG 1 cut(s) 573
HapII CCGG 1 cut(s) 100
HgaI GACGC 2 cut(s) 194, 557
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 5 cut(s) 155, 325, 1439, 1459, 1502
HpaII CCGG 1 cut(s) 100
HphI GGTGA 3 cut(s) 341, 367, 742
Hpy166II GTNNAC 4 cut(s) 69, 228, 349, 951
Hpy188I TCNGA 1 cut(s) 1078
Hpy188III TCNNGA 8 cut(s) 362, 463, 515, 626, 764, 788, 1424, 1605
Hpy8I GTNNAC 4 cut(s) 69, 228, 349, 951
HpyAV CCTTC 6 cut(s) 56, 345, 683, 734, 902, 946
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4IV ACGT 3 cut(s) 214, 1005, 1026
HpyF10VI GCNNNNNNNGC 2 cut(s) 1320, 1337
HpyF3I CTNAG 1 cut(s) 1431
HpySE526I ACGT 3 cut(s) 214, 1005, 1026
Ksp22I TGATCA 2 cut(s) 517, 1036
Kzo9I GATC 4 cut(s) 465, 517, 931, 1036
LpnPI CCDG 9 cut(s) 113, 177, 537, 577, 639, 711, 1294, 1409, 1497
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 5 cut(s) 43, 397, 504, 790, 1052
MaeII ACGT 3 cut(s) 214, 1005, 1026
MaeIII GTNAC 5 cut(s) 116, 761, 1196, 1280, 1370
MalI GATC 4 cut(s) 467, 519, 933, 1038
MbiI CCGCTC 1 cut(s) 1128
MboI GATC 4 cut(s) 465, 517, 931, 1036
MboII GAAGA 7 cut(s) 41, 440, 749, 803, 1097, 1148, 1512
MfeI CAATTG 1 cut(s) 313
MflI RGATCY 1 cut(s) 931
MlyI GAGTC 2 cut(s) 1448, 1511
MnlI CCTC 8 cut(s) 7, 396, 706, 721, 923, 1113, 1183, 1318
Mph1103I ATGCAT 2 cut(s) 115, 818
MseI TTAA 8 cut(s) 354, 779, 959, 1215, 1242, 1464, 1529, 1547
MslI CAYNNNNRTG 4 cut(s) 81, 380, 442, 1251
MspCI CTTAAG 2 cut(s) 353, 1528
MspI CCGG 1 cut(s) 100
MunI CAATTG 1 cut(s) 313
Mva1269I GAATGC 1 cut(s) 818
MwoI GCNNNNNNNGC 2 cut(s) 1320, 1337
NdeI CATATG 1 cut(s) 439
NdeII GATC 4 cut(s) 465, 517, 931, 1036
NlaIV GGNNCC 3 cut(s) 18, 104, 1080
NmuCI GTSAC 3 cut(s) 761, 1196, 1370
NsiI ATGCAT 2 cut(s) 115, 818
NspI RCATGY 5 cut(s) 117, 600, 820, 834, 949
PaeI GCATGC 1 cut(s) 834
PagI TCATGA 3 cut(s) 361, 462, 514
PciI ACATGT 2 cut(s) 596, 945
PctI GAATGC 1 cut(s) 818
PfeI GAWTC 3 cut(s) 155, 325, 1459
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 2 cut(s) 90, 1127
PleI GAGTC 2 cut(s) 1447, 1510
PmaCI CACGTG 1 cut(s) 215
PmlI CACGTG 1 cut(s) 215
PpsI GAGTC 2 cut(s) 1447, 1510
Ppu21I YACGTR 2 cut(s) 215, 1027
PscI ACATGT 2 cut(s) 596, 945
PshBI ATTAAT 1 cut(s) 1547
Psp1406I AACGTT 1 cut(s) 1005
PspCI CACGTG 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 18, 104, 1080
PspPI GGNCC 1 cut(s) 17
PsuI RGATCY 1 cut(s) 931
RsaI GTAC 3 cut(s) 227, 1307, 1396
RsaNI GTAC 3 cut(s) 226, 1306, 1395
RseI CAYNNNNRTG 4 cut(s) 81, 380, 442, 1251
SaqAI TTAA 8 cut(s) 354, 779, 959, 1215, 1242, 1464, 1529, 1547
SatI GCNGC 2 cut(s) 89, 1126
Sau3AI GATC 4 cut(s) 465, 517, 931, 1036
Sau96I GGNCC 1 cut(s) 17
ScaI AGTACT 1 cut(s) 1307
SchI GAGTC 2 cut(s) 1448, 1511
SfaNI GCATC 5 cut(s) 43, 397, 504, 790, 1052
SfcI CTRYAG 1 cut(s) 862
SinI GGWCC 1 cut(s) 17
SmiMI CAYNNNNRTG 4 cut(s) 81, 380, 442, 1251
SmlI CTYRAG 4 cut(s) 200, 353, 1011, 1528
SmoI CTYRAG 4 cut(s) 200, 353, 1011, 1528
SnaBI TACGTA 1 cut(s) 1027
SphI GCATGC 1 cut(s) 834
SsiI CCGC 3 cut(s) 1065, 1126, 1158
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 866
TaiI ACGT 3 cut(s) 217, 1008, 1029
TaqI TCGA 2 cut(s) 687, 1480
TatI WGTACW 1 cut(s) 1305
TauI GCSGC 1 cut(s) 1128
TfiI GAWTC 3 cut(s) 155, 325, 1459
Tru1I TTAA 8 cut(s) 354, 779, 959, 1215, 1242, 1464, 1529, 1547
Tru9I TTAA 8 cut(s) 354, 779, 959, 1215, 1242, 1464, 1529, 1547
TscAI CASTG 1 cut(s) 307
TseFI GTSAC 3 cut(s) 761, 1196, 1370
TseI GCWGC 1 cut(s) 88
Tsp45I GTSAC 3 cut(s) 761, 1196, 1370
TspGWI ACGGA 2 cut(s) 406, 1299
TspRI CASTG 1 cut(s) 307
Vha464I CTTAAG 2 cut(s) 353, 1528
VpaK11BI GGWCC 1 cut(s) 17
VspI ATTAAT 1 cut(s) 1547
XapI RAATTY 1 cut(s) 394
XceI RCATGY 5 cut(s) 117, 600, 820, 834, 949
ZrmI AGTACT 1 cut(s) 1307
Zsp2I ATGCAT 2 cut(s) 115, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.