FvH4_4g12791

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000226
Physical Location & Seq
Forward (+)
16461472 .. 16462227
756 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12791.t1

Sequence Viewer

Length: 681 bp
ATGTGTTTTCAACCTTCACCTCATAGGCTCAAATGTGCCTCCAATTGGCAGAACATCATTGAAAATGCCTCTCACCAGCATCCGTTCATTGTCCCACCCTTGGAGTTGGCCGACCTCCAAATCAATTGTCACATTTGTGGTGACTACTGGAGTGGCAGCGCCTACTATAGGGAATGTGCTGCATTACCGCGCGACATTAAAATGTCCGGGCACCAACATCGCGTCAAGCTAACCTGGTTTCTTGAAGATATTTACCCCAAGAACCAGCTTTGTGACGCATGTCACACAAGTTATTCTCGGGAAGAAGAAAACCCAAGCGGGTTCTCTGCTGCTGATGATGATGAGTTTGTTGATGCTGGGGAGATAGAAAACTTCAGTCATCAGCACTGGTTACTCGTTAATGGTCAGCGAGGGATGGTTCAAGATGAGAGGATGATTACTTGTGAAGGTTGCATTCGACCCATCACTCGAATTTCGACCCATCAATACCGGCTCAATAAAGAGTGCAGTACTTATTGGAGGGACAAAACATGTCTCATGCTCACCAGCTCCTTAATACAGAATGGGAGGACTTACAAGCATGATGCTCATGCAGCACACAACGTCACTCTTTGTAGTCTTGTTAGCAAGTGGAAGAGCCCCATTCGGTTTGATAAGAGGGATTTGGCTCCTCTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

227

Amino Acids

26.17

Weight (kDa)

6.48

Isoelectric Point (pI)

45.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 210
AccII CGCG 3 cut(s) 190, 192, 222
AciI CCGC 2 cut(s) 188, 318
AcoI YGGCCR 1 cut(s) 108
AcsI RAATTY 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 358
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 3 cut(s) 45, 100, 168
AflIII ACRYGT 1 cut(s) 530
AgsI TTSAA 4 cut(s) 11, 62, 245, 422
AjnI CCWGG 1 cut(s) 233
AleI CACNNNNGTG 1 cut(s) 135
AluBI AGCT 3 cut(s) 229, 268, 549
AluI AGCT 3 cut(s) 229, 268, 549
Alw26I GTCTC 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 4 cut(s) 156, 179, 329, 593
ApoI RAATTY 1 cut(s) 471
ArsI GACNNNNNNTTYG 2 cut(s) 112, 144
AspLEI GCGC 2 cut(s) 161, 192
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 4 cut(s) 9, 65, 152, 535
AvaI CYCGRG 1 cut(s) 297
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 641
BbvI GCAGC 4 cut(s) 166, 168, 316, 605
BccI CCATC 3 cut(s) 409, 470, 489
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BciT130I CCWGG 1 cut(s) 235
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 539
BfmI CTRYAG 2 cut(s) 166, 674
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 4 cut(s) 157, 180, 330, 594
BlsI GCNGC 4 cut(s) 158, 181, 331, 595
BmcAI AGTACT 1 cut(s) 511
Bme1390I CCNGG 2 cut(s) 208, 235
BmeT110I CYCGRG 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 212, 669
BmrFI CCNGG 2 cut(s) 208, 235
BmsI GCATC 3 cut(s) 88, 343, 574
BoxI GACNNNNGTC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 169
BpuMI CCSGG 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 99
Bsc4I CCNNNNNNNGG 3 cut(s) 45, 100, 168
Bse118I RCCGGY 1 cut(s) 489
Bse1I ACTGG 2 cut(s) 152, 392
BseBI CCWGG 1 cut(s) 235
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 3 cut(s) 79, 420, 438
BseLI CCNNNNNNNGG 3 cut(s) 45, 100, 168
BseNI ACTGG 2 cut(s) 152, 392
BseRI GAGGAG 1 cut(s) 660
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 4 cut(s) 166, 168, 316, 605
BseYI CCCAGC 1 cut(s) 356
BsgI GTGCAG 1 cut(s) 526
Bsh1236I CGCG 3 cut(s) 190, 192, 222
BshFI GGCC 1 cut(s) 110
BshNI GGYRCC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 2 cut(s) 207, 490
BslFI GGGAC 2 cut(s) 77, 536
BslI CCNNNNNNNGG 3 cut(s) 45, 100, 168
BsmAI GTCTC 1 cut(s) 539
BsmFI GGGAC 2 cut(s) 77, 536
BsmI GAATGC 1 cut(s) 453
BsnI GGCC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 2 cut(s) 213, 641
BspACI CCGC 2 cut(s) 188, 318
BspANI GGCC 1 cut(s) 110
BspFNI CGCG 3 cut(s) 190, 192, 222
BspLI GGNNCC 2 cut(s) 212, 669
BspMAI CTGCAG 1 cut(s) 678
BspQI GCTCTTC 1 cut(s) 629
BspT107I GGYRCC 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 489
BsrI ACTGG 2 cut(s) 152, 392
BssAI RCCGGY 1 cut(s) 489
BssECI CCNNGG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 629
BstENI CCTNNNNNAGG 1 cut(s) 166
BstF5I GGATG 3 cut(s) 79, 420, 438
BstFNI CGCG 3 cut(s) 190, 192, 222
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 2 cut(s) 161, 192
BstMAI GTCTC 1 cut(s) 539
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstNI CCWGG 1 cut(s) 235
BstNSI RCATGY 2 cut(s) 282, 534
BstPAI GACNNNNGTC 1 cut(s) 279
BstSCI CCNGG 2 cut(s) 206, 233
BstSFI CTRYAG 2 cut(s) 166, 674
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 3 cut(s) 190, 192, 222
BstV1I GCAGC 4 cut(s) 166, 168, 316, 605
BsuRI GGCC 1 cut(s) 110
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 3 cut(s) 79, 420, 438
BtsIMutI CAGTG 1 cut(s) 385
CfoI GCGC 2 cut(s) 161, 192
Cfr10I RCCGGY 1 cut(s) 489
CseI GACGC 2 cut(s) 211, 284
CsiI ACCWGGT 1 cut(s) 233
Csp6I GTAC 1 cut(s) 510
CviAII CATG 5 cut(s) 279, 531, 538, 581, 590
CviJI RGCY 8 cut(s) 28, 110, 229, 268, 493, 549, 639, 668
CviKI_1 RGCY 8 cut(s) 28, 110, 229, 268, 493, 549, 639, 668
CviQI GTAC 1 cut(s) 510
EaeI YGGCCR 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 629
EarI CTCTTC 1 cut(s) 629
Eco130I CCWWGG 1 cut(s) 99
Eco24I GRGCYC 1 cut(s) 641
Eco57I CTGAAG 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 297
EcoNI CCTNNNNNAGG 1 cut(s) 166
EcoRII CCWGG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 99
EcoT38I GRGCYC 1 cut(s) 641
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 282, 534, 541, 584, 593
FaiI YATR 7 cut(s) 24, 168, 280, 532, 539, 582, 591
FaqI GGGAC 2 cut(s) 77, 536
FatI CATG 5 cut(s) 278, 530, 537, 580, 589
FauI CCCGC 1 cut(s) 311
Fnu4HI GCNGC 4 cut(s) 157, 180, 330, 594
FokI GGATG 3 cut(s) 66, 427, 445
FriOI GRGCYC 1 cut(s) 641
Fsp4HI GCNGC 4 cut(s) 157, 180, 330, 594
GlaI GCGC 2 cut(s) 160, 191
GluI GCNGC 4 cut(s) 157, 180, 330, 594
GsaI CCCAGC 1 cut(s) 360
GsuI CTGGAG 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 1 cut(s) 110
HapII CCGG 2 cut(s) 207, 490
HgaI GACGC 2 cut(s) 211, 284
HhaI GCGC 2 cut(s) 161, 192
Hin1II CATG 5 cut(s) 282, 534, 541, 584, 593
Hin6I GCGC 2 cut(s) 159, 190
HinP1I GCGC 2 cut(s) 159, 190
HpaII CCGG 2 cut(s) 207, 490
HphI GGTGA 4 cut(s) 9, 65, 152, 535
Hpy188III TCNNGA 3 cut(s) 242, 299, 422
HpyAV CCTTC 2 cut(s) 24, 440
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 5 cut(s) 182, 453, 507, 593, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 5 cut(s) 282, 534, 541, 584, 593
HspAI GCGC 2 cut(s) 159, 190
LguI GCTCTTC 1 cut(s) 629
LmnI GCTCC 2 cut(s) 554, 673
Lsp1109I GCAGC 4 cut(s) 166, 168, 316, 605
LweI GCATC 3 cut(s) 88, 343, 574
MabI ACCWGGT 1 cut(s) 233
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 6 cut(s) 128, 140, 272, 281, 390, 604
MboII GAAGA 4 cut(s) 257, 314, 317, 646
MfeI CAATTG 2 cut(s) 43, 124
MhlI GDGCHC 2 cut(s) 213, 641
MluCI AATT 3 cut(s) 43, 124, 471
MseI TTAA 3 cut(s) 198, 399, 554
MslI CAYNNNNRTG 2 cut(s) 135, 200
MspI CCGG 2 cut(s) 207, 490
MspR9I CCNGG 2 cut(s) 208, 235
MunI CAATTG 2 cut(s) 43, 124
Mva1269I GAATGC 1 cut(s) 453
MvaI CCWGG 1 cut(s) 235
MvnI CGCG 3 cut(s) 190, 192, 222
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 1 cut(s) 208
NlaIII CATG 5 cut(s) 282, 534, 541, 584, 593
NlaIV GGNNCC 2 cut(s) 212, 669
NmuCI GTSAC 5 cut(s) 128, 140, 272, 281, 604
NspI RCATGY 2 cut(s) 282, 534
OliI CACNNNNGTG 1 cut(s) 135
PciI ACATGT 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 629
PctI GAATGC 1 cut(s) 453
PkrI GCNGC 4 cut(s) 158, 181, 331, 595
PscI ACATGT 1 cut(s) 530
PshAI GACNNNNGTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 233
PspFI CCCAGC 1 cut(s) 356
PspGI CCWGG 1 cut(s) 233
PspN4I GGNNCC 2 cut(s) 212, 669
PstI CTGCAG 1 cut(s) 678
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
RseI CAYNNNNRTG 2 cut(s) 135, 200
SapI GCTCTTC 1 cut(s) 629
SaqAI TTAA 3 cut(s) 198, 399, 554
SatI GCNGC 4 cut(s) 157, 180, 330, 594
ScaI AGTACT 1 cut(s) 511
ScrFI CCNGG 2 cut(s) 208, 235
SduI GDGCHC 2 cut(s) 213, 641
SetI ASST 9 cut(s) 16, 22, 117, 231, 236, 270, 451, 551, 606
SexAI ACCWGGT 1 cut(s) 233
SfaNI GCATC 3 cut(s) 88, 343, 574
SfcI CTRYAG 2 cut(s) 166, 674
SmiMI CAYNNNNRTG 2 cut(s) 135, 200
Sse9I AATT 3 cut(s) 43, 124, 471
SsiI CCGC 2 cut(s) 188, 318
StyD4I CCNGG 2 cut(s) 206, 233
StyI CCWWGG 1 cut(s) 99
TaiI ACGT 1 cut(s) 606
TaqI TCGA 3 cut(s) 457, 469, 476
TasI AATT 3 cut(s) 43, 124, 471
TatI WGTACW 1 cut(s) 509
Tru1I TTAA 3 cut(s) 198, 399, 554
Tru9I TTAA 3 cut(s) 198, 399, 554
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 5 cut(s) 128, 140, 272, 281, 604
TseI GCWGC 4 cut(s) 156, 179, 329, 593
Tsp45I GTSAC 5 cut(s) 128, 140, 272, 281, 604
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 72
TspRI CASTG 1 cut(s) 392
XagI CCTNNNNNAGG 1 cut(s) 166
XapI RAATTY 1 cut(s) 471
XceI RCATGY 2 cut(s) 282, 534
ZrmI AGTACT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.