AT4G01925

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000226
Physical Location & Seq
Reverse (-)
833063 .. 834340
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01925.1

Sequence Viewer

Length: 843 bp
ATGTGGGAGGAATGTGAATTACATTTCCATGTGGATTGTGTATGGCACCCAACGGAGTTAAAACACCCTTTGGAGGTAAACCATCCTTACCATGCCTTACACCCTCTTAAGCTCTTAACTGCTAGATTTCCGGATTATTCTGATGGAAAATGTCGTCTTTGTGGAAGTAAGATTGATGATAGGTTGTTTTATCATTGTTCTTCTTGTAACTTCACCTTGGGTTTGTGTTGTGTTTTACGCCCACCACAACCGTCTCTTCTGAACTTGAAAGCTCATGATCACCAACTCACTCTTCTCCCAAGACTCGATTCTTTTACATGTAATGCTTGCGGGCTGAAGGGAGATCGAAGCCCTTACATATGTTTTCAATGTGGTTTCATGATCCATCAAGATTGTCTTGGCCCTCCACGCCTCATAAACATCAATCGGCATGATCACCGTGTTGTTCGCACTTCTGTTCTTGGTGTCGTGAACTCTGTATGTGGAGTATGTCGTCAGAAGGTGGACTGGACTTGTGGAGGTTTTTCTTGTCAGAGGTGCCCCGATTATGTCGCTCATTCGAAATGTGCTACCAGAGAAGATGTATGGAACGGAGAAGAACTCGAAGGAGTACCTGAAGAAATAGAAGATATAGAGCCATATGTGGTAATAGATGACAATACAATACAGCATTTCAGCCACAAAGAGCATTACCTAAGGCTCCACGATAATGGTCTTCTTTGTGACGACAACAAGCGCTGTTGTGAGTTGCGTTGCATTTTTCCTATCATCTTGAAGAGACTTGGAGCCTCACAAAAATACTGTTGCTCTCCTTATTGCGCTAATGCAATGAGTGTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

280

Amino Acids

32.08

Weight (kDa)

6.39

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 29 - 78 1.2e-09 C1 domain
C1_2 PF03107 91 - 132 1.4e-13 C1 domain
C1_2 PF03107 142 - 190 2.9e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 45, 537
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 1 cut(s) 330
AclWI GGATC 1 cut(s) 376
AcuI CTGAAG 2 cut(s) 356, 636
AfaI GTAC 1 cut(s) 612
AfeI AGCGCT 1 cut(s) 737
AfiI CCNNNNNNNGG 1 cut(s) 73
AflII CTTAAG 1 cut(s) 107
AflIII ACRYGT 1 cut(s) 317
AgsI TTSAA 3 cut(s) 268, 368, 775
AjuI GAANNNNNNNTTGG 4 cut(s) 276, 292, 308, 324
AluBI AGCT 2 cut(s) 112, 272
AluI AGCT 2 cut(s) 112, 272
Alw26I GTCTC 2 cut(s) 258, 772
AlwI GGATC 1 cut(s) 376
Aor13HI TCCGGA 1 cut(s) 130
Aor51HI AGCGCT 1 cut(s) 737
AoxI GGCC 1 cut(s) 400
AspLEI GCGC 2 cut(s) 738, 821
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 3 cut(s) 205, 272, 428
AsuII TTCGAA 1 cut(s) 560
AxyI CCTNAGG 1 cut(s) 695
BaeGI GKGCMC 1 cut(s) 542
BanI GGYRCC 2 cut(s) 45, 537
BbsI GAAGAC 1 cut(s) 707
BccI CCATC 3 cut(s) 90, 137, 393
BclI TGATCA 2 cut(s) 277, 433
BcoDI GTCTC 2 cut(s) 258, 772
BfaI CTAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 739
BfrI CTTAAG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 401
BmiI GGNNCC 4 cut(s) 47, 539, 701, 787
BpiI GAAGAC 1 cut(s) 707
BplI GAGNNNNNCTC 2 cut(s) 585, 617
Bpu14I TTCGAA 1 cut(s) 560
BsaJI CCNNGG 1 cut(s) 216
BsaWI WCCGGW 1 cut(s) 130
Bsc4I CCNNNNNNNGG 1 cut(s) 73
Bse1I ACTGG 1 cut(s) 512
Bse21I CCTNAGG 1 cut(s) 695
Bse3DI GCAATG 1 cut(s) 834
BseAI TCCGGA 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 73
BseMI GCAATG 1 cut(s) 834
BseNI ACTGG 1 cut(s) 512
BseSI GKGCMC 1 cut(s) 542
BshFI GGCC 1 cut(s) 402
BshNI GGYRCC 2 cut(s) 45, 537
BsiSI CCGG 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 258, 772
BsmBI CGTCTC 1 cut(s) 258
BsnI GGCC 1 cut(s) 402
Bsp119I TTCGAA 1 cut(s) 560
Bsp1286I GDGCHC 1 cut(s) 542
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 4 cut(s) 277, 343, 381, 433
BspACI CCGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 402
BspEI TCCGGA 1 cut(s) 130
BspHI TCATGA 2 cut(s) 274, 378
BspLI GGNNCC 4 cut(s) 47, 539, 701, 787
BspPI GGATC 1 cut(s) 376
BspT104I TTCGAA 1 cut(s) 560
BspT107I GGYRCC 2 cut(s) 45, 537
BspTI CTTAAG 1 cut(s) 107
BsrDI GCAATG 1 cut(s) 834
BsrI ACTGG 1 cut(s) 512
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 4 cut(s) 277, 343, 381, 433
BssT1I CCWWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 252, 440, 803
Bst6I CTCTTC 3 cut(s) 261, 297, 770
BstAFI CTTAAG 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 560
BstC8I GCNNGC 2 cut(s) 328, 332
BstDEI CTNAG 1 cut(s) 695
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 739
BstHHI GCGC 2 cut(s) 738, 821
BstKTI GATC 4 cut(s) 280, 346, 384, 436
BstMAI GTCTC 2 cut(s) 258, 772
BstMBI GATC 4 cut(s) 277, 343, 381, 433
BstMWI GCNNNNNNNGC 1 cut(s) 408
BstNSI RCATGY 1 cut(s) 321
BstSLI GKGCMC 1 cut(s) 542
BstV2I GAAGAC 1 cut(s) 707
BstXI CCANNNNNNTGG 1 cut(s) 710
Bsu36I CCTNAGG 1 cut(s) 695
BsuRI GGCC 1 cut(s) 402
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 328, 332
CciI TCATGA 2 cut(s) 274, 378
CfoI GCGC 2 cut(s) 738, 821
Cfr13I GGNCC 1 cut(s) 401
Csp6I GTAC 1 cut(s) 611
CviAII CATG 6 cut(s) 29, 92, 275, 318, 379, 431
CviJI RGCY 9 cut(s) 112, 272, 334, 351, 402, 637, 678, 700, 788
CviKI_1 RGCY 9 cut(s) 112, 272, 334, 351, 402, 637, 678, 700, 788
CviQI GTAC 1 cut(s) 611
DdeI CTNAG 1 cut(s) 695
DpnI GATC 4 cut(s) 279, 345, 383, 435
DpnII GATC 4 cut(s) 277, 343, 381, 433
Eam1104I CTCTTC 3 cut(s) 261, 297, 770
EarI CTCTTC 3 cut(s) 261, 297, 770
Eco130I CCWWGG 1 cut(s) 216
Eco47III AGCGCT 1 cut(s) 737
Eco57I CTGAAG 2 cut(s) 356, 636
Eco81I CCTNAGG 1 cut(s) 695
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 6 cut(s) 32, 95, 278, 321, 382, 434
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 6 cut(s) 28, 91, 274, 317, 378, 430
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 2 cut(s) 359, 640
FbaI TGATCA 2 cut(s) 277, 433
FokI GGATG 1 cut(s) 69
FspBI CTAG 1 cut(s) 123
GlaI GCGC 2 cut(s) 737, 820
HaeII RGCGCY 1 cut(s) 739
HaeIII GGCC 1 cut(s) 402
HapII CCGG 1 cut(s) 131
HhaI GCGC 2 cut(s) 738, 821
Hin1II CATG 6 cut(s) 32, 95, 278, 321, 382, 434
Hin6I GCGC 2 cut(s) 736, 819
HinP1I GCGC 2 cut(s) 736, 819
HinfI GANTC 2 cut(s) 303, 308
HpaII CCGG 1 cut(s) 131
HphI GGTGA 3 cut(s) 205, 272, 428
Hpy166II GTNNAC 3 cut(s) 79, 472, 505
Hpy188I TCNGA 4 cut(s) 142, 261, 498, 534
Hpy188III TCNNGA 6 cut(s) 131, 275, 379, 389, 469, 772
Hpy8I GTNNAC 3 cut(s) 79, 472, 505
HpyAV CCTTC 3 cut(s) 331, 493, 599
HpyCH4III ACNGT 3 cut(s) 252, 440, 803
HpyCH4V TGCA 2 cut(s) 756, 827
HpyF10VI GCNNNNNNNGC 1 cut(s) 408
HpyF3I CTNAG 1 cut(s) 695
Hsp92II CATG 6 cut(s) 32, 95, 278, 321, 382, 434
HspAI GCGC 2 cut(s) 736, 819
Kpn2I TCCGGA 1 cut(s) 130
Ksp22I TGATCA 2 cut(s) 277, 433
Kzo9I GATC 4 cut(s) 277, 343, 381, 433
LmnI GCTCC 2 cut(s) 705, 785
LpnPI CCDG 4 cut(s) 144, 493, 586, 627
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 206, 722
MalI GATC 4 cut(s) 279, 345, 383, 435
MboI GATC 4 cut(s) 277, 343, 381, 433
MboII GAAGA 9 cut(s) 192, 248, 284, 590, 608, 629, 638, 707, 787
MhlI GDGCHC 1 cut(s) 542
MluCI AATT 2 cut(s) 17, 838
MlyI GAGTC 1 cut(s) 297
MnlI CCTC 7 cut(s) 67, 114, 414, 422, 512, 528, 799
MroI TCCGGA 1 cut(s) 130
MseI TTAA 4 cut(s) 59, 108, 116, 841
MslI CAYNNNNRTG 2 cut(s) 27, 708
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 408
NdeI CATATG 2 cut(s) 359, 640
NdeII GATC 4 cut(s) 277, 343, 381, 433
NlaIII CATG 6 cut(s) 32, 95, 278, 321, 382, 434
NlaIV GGNNCC 4 cut(s) 47, 539, 701, 787
NmuCI GTSAC 1 cut(s) 722
NspI RCATGY 1 cut(s) 321
NspV TTCGAA 1 cut(s) 560
PagI TCATGA 2 cut(s) 274, 378
PciI ACATGT 1 cut(s) 317
PfeI GAWTC 1 cut(s) 308
PleI GAGTC 1 cut(s) 297
PpsI GAGTC 1 cut(s) 297
PscI ACATGT 1 cut(s) 317
PspN4I GGNNCC 4 cut(s) 47, 539, 701, 787
PspPI GGNCC 1 cut(s) 401
RsaI GTAC 1 cut(s) 612
RsaNI GTAC 1 cut(s) 611
RseI CAYNNNNRTG 2 cut(s) 27, 708
SaqAI TTAA 4 cut(s) 59, 108, 116, 841
Sau3AI GATC 4 cut(s) 277, 343, 381, 433
Sau96I GGNCC 1 cut(s) 401
SchI GAGTC 1 cut(s) 297
SduI GDGCHC 1 cut(s) 542
SfuI TTCGAA 1 cut(s) 560
SmiMI CAYNNNNRTG 2 cut(s) 27, 708
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 17, 838
SsiI CCGC 1 cut(s) 330
SspMI CTAG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 252, 440, 803
TaqI TCGA 4 cut(s) 306, 346, 560, 603
TasI AATT 2 cut(s) 17, 838
TfiI GAWTC 1 cut(s) 308
Tru1I TTAA 4 cut(s) 59, 108, 116, 841
Tru9I TTAA 4 cut(s) 59, 108, 116, 841
TseFI GTSAC 1 cut(s) 722
Tsp45I GTSAC 1 cut(s) 722
TspDTI ATGAA 1 cut(s) 367
TspGWI ACGGA 2 cut(s) 68, 606
Vha464I CTTAAG 1 cut(s) 107
XceI RCATGY 1 cut(s) 321
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.