AT5G59920

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000226
Physical Location & Seq
Forward (+)
24128491 .. 24131081
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G59920.1

Sequence Viewer

Length: 2133 bp
ATGGCTACAGAAGCAGTAGACCTACCAATTCATGAGCACCCTCTTTTTCCTTCGGCTCGATGTATTGATGATGAATGTGATGGCTGCCATGTAAATGGTTTCATGTACGCCGGCTACTTTTGCAATGAACCTTACTGTTATGTTTGGTTCCATAAGGACTGTGCTGAGGCCCCAGGGGAGATCAGCCATAGTTCCCACCCTGAACATCCTCTCCTGCTCACCAATGACTCGAAAGATGGTCCATGTGATTTGTGTGGACAAAAGCTATTGACTCCCTGTTATAGTTGTCCCACATGTGAGTTCAAGGTGGATTTGACTTGTGGTATGAAACCGTCACCGCCTGCTATCGAACATCCGCTGTGTCATGATCATGCTGTCGTCTTCTTGAAGATACGAGAGGAGAAGGTTCCTTGTGAATTATGCAAGGAGTCTATTGAAGGTCCATCCTATTCATGTCTTGAATGCGATATGTATTTCCACGTGAACTGCGTCCATCTCTCGGAAGAGGTAAATCATCCTTGTCATTCTATTCATCCTCTCAAGTTAATCACATCTGAGTCACTTACGGATGATGCCGAGAAAAGTTGTCTTTTATGTGGAAATATACCAGCTGAAAATATGCTTTATCATTGTTCCGTTTGCAATTTCACATCGTGCCTTGGTTGTACCAAAAACCCACCACTCCTTGTTATTGAGCATATGAAGACCCACAAACACCCACTTACTCTCTTACCTAGAAGAATCTCATGTATCTGTGACGTTTGTGGGAAGAAATGCCAGTTTACGGCGTATGTATGTCTTCAGTGTGATTTTGTTACCGCAAGAAAGTGTATCGACAGGCCCCGTGTCATCAATATCAATCGTCATGATCATCGCATATATTTAACTCATCATCTCGGCACTGGGTATTCGGAATGCGGAGTTTGTCACAAAAATGTAAGTCAGTACAAGGGGGCTTACTCTTGCTCTGTTTGCCCTAACTATGCTGTTCATTCTACATGTGCCGTGAGAACTGACGTATGGGATGGCGTAGAATTGGAAGGGACCACTGAGATCACAGAAGACATTTCACCATTCAAGGTGGTGGGTGATAACTTGATATGCCATTTTAGTCATGAAGAGCATCAATTAAAGCTTCACAAAGAAGACGTCATTCATGATGAGCGCAGACGCTGTGAAGCATGTATCCATCCAGTTCAATTTGGCTCCATCTATGTTTGTGAAGAAGAGGAATGTTGCTTTGTTCTCCATGAAAAGTGTGCTAATCTTCCTATGAAGAAAAGACTTGTCTTTGGCACCAGACCGTACACATTAATGAAAGAAACTACCGAAATTACACACTGCGAGTTGTGTGGAATATTATCTGATGGTTTCGCGTACAGCTCCCATGAGTGGTCGGATGTAGATGTGCATTGTGGTTCCCTTAATGAGCCGCTCGTCCATGATGGCCATATACATCCCTTATATTTTGCAAAAAAAGAGGAACACACTTGCGATGGATGCCAAAAGAGTATAGAAGATTATATGCTTCGTTGTAAAGCTTGTGACTTTGATTTGTGTTTGTATTGTGCTACTTTACCAGAAAAGATTTGGCATAGGAACGATGGGCACCCTCTCACTTTATGTTGTGGTGAGAAGGAAGAGGCGAGCGGTAAATATTGGTGCGACATTTGTGAGAAGGAATTAGATCCAAGTATATGGTTCTATACATGTTATGATTGTGGAGTCACCTTGCATGCTCAGTGCGTACTAGGAGATTTCTCACGTCTCGTGCTAGGACAAATCTACTCCTTTGGGGAAAAAGAAATCGAGTTTGAGGCGGTTCCTAACAATATCAACACTCGGCCATTTTGCATCCAGTGTAACTCTCGATGCAAGGTCTCCGTCATCCTAAAGATCCTAAAGGATTCTGAAGATGGTTCTGATGATGGTTCTGATGATGTTTCTGATGATGTTTCTGATGATCCTTCTAATGATGTTTCTGATGATACTTCTGATGATGATTCTGATGTTGTTTCTGATGTTGTTTCTGATGATGCTTCTAATGATGATTCTGATGATACGTCGGATGATCACAATGGGTATATCTGCTCCCGATCATGTTTATCGAGTTATTTGGGTGAAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

710

Amino Acids

79.92

Weight (kDa)

4.93

Isoelectric Point (pI)

51.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 65 - 107 4.6e-09 C1 domain
C1_2 PF03107 121 - 164 5.2e-07 C1 domain
C1_2 PF03107 173 - 222 4e-06 C1 domain
C1_2 PF03107 235 - 278 3.9e-08 C1 domain
C1_2 PF03107 287 - 335 4e-09 C1 domain
C1_2 PF03107 370 - 421 1.9e-10 C1 domain
C1_2 PF03107 533 - 583 1.1e-11 C1 domain
C1-like_CT PF22926 605 - 637 1.6e-10 C1 domain-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1152
AccB1I GGYRCC 2 cut(s) 1295, 1608
AccBSI CCGCTC 2 cut(s) 1435, 1650
AccI GTMKAC 1 cut(s) 18
AccII CGCG 1 cut(s) 1376
AciI CCGC 7 cut(s) 338, 356, 819, 918, 1433, 1650, 1820
AclWI GGATC 3 cut(s) 1682, 1891, 1958
AcoI YGGCCR 2 cut(s) 1447, 1844
AcsI RAATTY 1 cut(s) 2127
AcuI CTGAAG 2 cut(s) 785, 1932
AcvI CACGTG 1 cut(s) 481
AcyI GRCGYC 1 cut(s) 1149
AdeI CACNNNGTG 1 cut(s) 654
AfaI GTAC 6 cut(s) 107, 667, 947, 1307, 1379, 1749
AfiI CCNNNNNNNGG 3 cut(s) 499, 784, 1392
AflIII ACRYGT 3 cut(s) 293, 998, 1709
AgsI TTSAA 6 cut(s) 304, 388, 437, 461, 1078, 1199
AjiI CACGTC 1 cut(s) 1766
AjnI CCWGG 1 cut(s) 172
AloI GAACNNNNNNTCC 2 cut(s) 195, 227
AluBI AGCT 5 cut(s) 265, 611, 1135, 1383, 1541
AluI AGCT 5 cut(s) 265, 611, 1135, 1383, 1541
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 1772, 1885
AlwI GGATC 3 cut(s) 1682, 1891, 1958
AlwNI CAGNNNCTG 1 cut(s) 1173
AoxI GGCC 4 cut(s) 168, 839, 1447, 1844
ApeKI GCWGC 1 cut(s) 84
ApoI RAATTY 1 cut(s) 2127
ArsI GACNNNNNNTTYG 2 cut(s) 1134, 1166
AseI ATTAAT 1 cut(s) 1313
AspLEI GCGC 1 cut(s) 1167
AspS9I GGNCC 5 cut(s) 169, 239, 440, 840, 1044
AsuHPI GGTGA 7 cut(s) 211, 327, 1062, 1100, 1643, 1720, 2132
AvaII GGWCC 3 cut(s) 239, 440, 1044
BaeGI GKGCMC 1 cut(s) 1611
BalI TGGCCA 1 cut(s) 1449
BanI GGYRCC 2 cut(s) 1295, 1608
BauI CACGAG 1 cut(s) 1769
BbrPI CACGTG 1 cut(s) 481
BbsI GAAGAC 5 cut(s) 373, 710, 791, 1068, 1152
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 71
BceAI ACGGC 2 cut(s) 801, 989
BciT130I CCWGG 1 cut(s) 174
BciVI GTATCC 1 cut(s) 1196
BclI TGATCA 3 cut(s) 367, 868, 2071
BcoDI GTCTC 2 cut(s) 1772, 1885
BfaI CTAG 3 cut(s) 735, 1751, 1775
BfmI CTRYAG 1 cut(s) 6
BfuI GTATCC 1 cut(s) 1196
BisI GCNGC 2 cut(s) 85, 1433
BlsI GCNGC 2 cut(s) 86, 1434
Bme1390I CCNGG 1 cut(s) 174
Bme18I GGWCC 3 cut(s) 239, 440, 1044
BmgBI CACGTC 1 cut(s) 1766
BmgT120I GGNCC 5 cut(s) 169, 239, 440, 840, 1044
BmrFI CCNGG 1 cut(s) 174
BmrI ACTGGG 1 cut(s) 912
BmsI GCATC 6 cut(s) 562, 1132, 1490, 1862, 1863, 2026
BmuI ACTGGG 1 cut(s) 912
BpiI GAAGAC 5 cut(s) 373, 710, 791, 1068, 1152
Bpu10I CCTNAGC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 524
BsaAI YACGTR 1 cut(s) 481
BsaHI GRCGYC 1 cut(s) 1149
BsaI GGTCTC 1 cut(s) 1885
BsaJI CCNNGG 3 cut(s) 172, 173, 658
BsaXI ACNNNNNCTCC 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 3 cut(s) 499, 784, 1392
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 4 cut(s) 778, 907, 1193, 1858
Bse3DI GCAATG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 172, 173, 658
BseLI CCNNNNNNNGG 3 cut(s) 499, 784, 1392
BseMI GCAATG 1 cut(s) 130
BseMII CTCAG 4 cut(s) 156, 546, 1041, 1754
BseNI ACTGG 4 cut(s) 778, 907, 1193, 1858
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 1611
BseXI GCAGC 1 cut(s) 71
Bsh1236I CGCG 1 cut(s) 1376
BshFI GGCC 4 cut(s) 170, 841, 1449, 1846
BshNI GGYRCC 2 cut(s) 1295, 1608
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 1 cut(s) 111
BslFI GGGAC 2 cut(s) 273, 1057
BslI CCNNNNNNNGG 3 cut(s) 499, 784, 1392
BsmAI GTCTC 2 cut(s) 1772, 1885
BsmBI CGTCTC 1 cut(s) 1772
BsmFI GGGAC 2 cut(s) 273, 1057
BsmI GAATGC 2 cut(s) 467, 920
BsnI GGCC 4 cut(s) 170, 841, 1449, 1846
Bso31I GGTCTC 1 cut(s) 1885
Bsp1286I GDGCHC 2 cut(s) 39, 1611
Bsp143I GATC 9 cut(s) 180, 367, 868, 1053, 1687, 1896, 1963, 2071, 2096
BspACI CCGC 7 cut(s) 338, 356, 819, 918, 1433, 1650, 1820
BspANI GGCC 4 cut(s) 170, 841, 1449, 1846
BspCNI CTCAG 4 cut(s) 157, 547, 1042, 1753
BspFNI CGCG 1 cut(s) 1376
BspHI TCATGA 5 cut(s) 31, 364, 865, 1114, 1156
BspPI GGATC 3 cut(s) 1682, 1891, 1958
BspQI GCTCTTC 1 cut(s) 1113
BspT107I GGYRCC 2 cut(s) 1295, 1608
BspTNI GGTCTC 1 cut(s) 1885
BsrBI CCGCTC 2 cut(s) 1435, 1650
BsrDI GCAATG 1 cut(s) 130
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 4 cut(s) 778, 907, 1193, 1858
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 3 cut(s) 172, 173, 658
BssMI GATC 9 cut(s) 180, 367, 868, 1053, 1687, 1896, 1963, 2071, 2096
BssNI GRCGYC 1 cut(s) 1149
BssSI CACGAG 1 cut(s) 1769
BssT1I CCWWGG 1 cut(s) 658
Bst2BI CACGAG 1 cut(s) 1769
Bst2UI CCWGG 1 cut(s) 174
Bst4CI ACNGT 4 cut(s) 137, 161, 333, 1305
Bst6I CTCTTC 4 cut(s) 498, 1113, 1221, 1635
BstACI GRCGYC 1 cut(s) 1149
BstBAI YACGTR 1 cut(s) 481
BstC8I GCNNGC 4 cut(s) 112, 342, 1648, 1737
BstDEI CTNAG 4 cut(s) 165, 555, 1050, 1740
BstFNI CGCG 1 cut(s) 1376
BstHHI GCGC 1 cut(s) 1167
BstKTI GATC 9 cut(s) 183, 370, 871, 1056, 1690, 1899, 1966, 2074, 2099
BstMAI GTCTC 2 cut(s) 1772, 1885
BstMBI GATC 9 cut(s) 180, 367, 868, 1053, 1687, 1896, 1963, 2071, 2096
BstMWI GCNNNNNNNGC 4 cut(s) 11, 120, 972, 1500
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 5 cut(s) 297, 1002, 1185, 1713, 1739
BstSCI CCNGG 1 cut(s) 172
BstSFI CTRYAG 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 1611
BstUI CGCG 1 cut(s) 1376
BstV1I GCAGC 1 cut(s) 71
BstV2I GAAGAC 5 cut(s) 373, 710, 791, 1068, 1152
BstX2I RGATCY 2 cut(s) 1687, 1896
BstXI CCANNNNNNTGG 2 cut(s) 95, 1698
BstYI RGATCY 2 cut(s) 1687, 1896
BsuI GTATCC 1 cut(s) 1196
BsuRI GGCC 4 cut(s) 170, 841, 1449, 1846
BtgZI GCGATG 2 cut(s) 857, 1509
BtrI CACGTC 1 cut(s) 1766
BtsI GCAGTG 1 cut(s) 1339
BtsIMutI CAGTG 6 cut(s) 809, 900, 1047, 1339, 1748, 1865
Cac8I GCNNGC 4 cut(s) 112, 342, 1648, 1737
CaiI CAGNNNCTG 1 cut(s) 1173
CciI TCATGA 5 cut(s) 31, 364, 865, 1114, 1156
CfoI GCGC 1 cut(s) 1167
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 5 cut(s) 169, 239, 440, 840, 1044
CseI GACGC 2 cut(s) 478, 1179
Csp6I GTAC 6 cut(s) 106, 666, 946, 1306, 1378, 1748
CviQI GTAC 6 cut(s) 106, 666, 946, 1306, 1378, 1748
DdeI CTNAG 4 cut(s) 165, 555, 1050, 1740
DpnI GATC 9 cut(s) 182, 369, 870, 1055, 1689, 1898, 1965, 2073, 2098
DpnII GATC 9 cut(s) 180, 367, 868, 1053, 1687, 1896, 1963, 2071, 2096
DraIII CACNNNGTG 1 cut(s) 654
EaeI YGGCCR 2 cut(s) 1447, 1844
Eam1104I CTCTTC 4 cut(s) 498, 1113, 1221, 1635
EarI CTCTTC 4 cut(s) 498, 1113, 1221, 1635
Eco130I CCWWGG 1 cut(s) 658
Eco31I GGTCTC 1 cut(s) 1885
Eco47I GGWCC 3 cut(s) 239, 440, 1044
Eco57I CTGAAG 2 cut(s) 785, 1932
Eco72I CACGTG 1 cut(s) 481
EcoO109I RGGNCCY 2 cut(s) 169, 840
EcoRII CCWGG 1 cut(s) 172
EcoT14I CCWWGG 1 cut(s) 658
ErhI CCWWGG 1 cut(s) 658
Esp3I CGTCTC 1 cut(s) 1772
FaqI GGGAC 2 cut(s) 273, 1057
FauNDI CATATG 1 cut(s) 699
FbaI TGATCA 3 cut(s) 367, 868, 2071
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 2 cut(s) 85, 1433
Fsp4HI GCNGC 2 cut(s) 85, 1433
FspBI CTAG 3 cut(s) 735, 1751, 1775
GlaI GCGC 1 cut(s) 1166
GluI GCNGC 2 cut(s) 85, 1433
HaeIII GGCC 4 cut(s) 170, 841, 1449, 1846
HapII CCGG 1 cut(s) 111
HgaI GACGC 2 cut(s) 478, 1179
HhaI GCGC 1 cut(s) 1167
Hin1I GRCGYC 1 cut(s) 1149
Hin6I GCGC 1 cut(s) 1165
HinP1I GCGC 1 cut(s) 1165
HindIII AAGCTT 2 cut(s) 1133, 1539
HinfI GANTC 9 cut(s) 227, 271, 428, 557, 741, 1725, 1907, 2003, 2051
HpaII CCGG 1 cut(s) 111
HphI GGTGA 7 cut(s) 211, 327, 1062, 1100, 1643, 1720, 2132
Hpy166II GTNNAC 5 cut(s) 19, 257, 484, 783, 1308
Hpy188III TCNNGA 9 cut(s) 32, 365, 385, 458, 866, 1115, 1157, 1869, 2094
Hpy8I GTNNAC 5 cut(s) 19, 257, 484, 783, 1308
Hpy99I CGWCG 1 cut(s) 2068
HpyAV CCTTC 7 cut(s) 60, 397, 431, 1034, 1630, 1672, 1977
HpyCH4III ACNGT 4 cut(s) 137, 161, 333, 1305
HpyCH4IV ACGT 6 cut(s) 480, 759, 1017, 1149, 1765, 2063
HpyCH4V TGCA 8 cut(s) 123, 423, 642, 1411, 1472, 1735, 1854, 1875
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 120, 972, 1500
HpyF3I CTNAG 4 cut(s) 165, 555, 1050, 1740
HpySE526I ACGT 6 cut(s) 480, 759, 1017, 1149, 1765, 2063
Hsp92I GRCGYC 1 cut(s) 1149
HspAI GCGC 1 cut(s) 1165
KroI GCCGGC 1 cut(s) 110
KroNI GCCGGC 1 cut(s) 112
Ksp22I TGATCA 3 cut(s) 367, 868, 2071
Kzo9I GATC 9 cut(s) 180, 367, 868, 1053, 1687, 1896, 1963, 2071, 2096
LguI GCTCTTC 1 cut(s) 1113
LmnI GCTCC 3 cut(s) 1211, 1388, 2096
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 6 cut(s) 562, 1132, 1490, 1862, 1863, 2026
MaeI CTAG 3 cut(s) 735, 1751, 1775
MaeII ACGT 6 cut(s) 480, 759, 1017, 1149, 1765, 2063
MaeIII GTNAC 8 cut(s) 333, 558, 755, 814, 926, 1544, 1726, 1862
MalI GATC 9 cut(s) 182, 369, 870, 1055, 1689, 1898, 1965, 2073, 2098
MbiI CCGCTC 2 cut(s) 1435, 1650
MboI GATC 9 cut(s) 180, 367, 868, 1053, 1687, 1896, 1963, 2071, 2096
MflI RGATCY 2 cut(s) 1687, 1896
MhlI GDGCHC 2 cut(s) 39, 1611
MlsI TGGCCA 1 cut(s) 1449
MluCI AATT 9 cut(s) 27, 416, 643, 1034, 1127, 1199, 1332, 1682, 2127
MluNI TGGCCA 1 cut(s) 1449
MlyI GAGTC 5 cut(s) 221, 265, 437, 566, 1734
MmeI TCCRAC 2 cut(s) 1377, 2046
Mox20I TGGCCA 1 cut(s) 1449
MroNI GCCGGC 1 cut(s) 110
MscI TGGCCA 1 cut(s) 1449
MseI TTAA 5 cut(s) 545, 884, 1130, 1313, 1425
MslI CAYNNNNRTG 4 cut(s) 93, 369, 933, 1313
Msp20I TGGCCA 1 cut(s) 1449
MspA1I CMGCKG 2 cut(s) 358, 611
MspI CCGG 1 cut(s) 111
MspR9I CCNGG 1 cut(s) 174
Mva1269I GAATGC 2 cut(s) 467, 920
MvaI CCWGG 1 cut(s) 174
MvnI CGCG 1 cut(s) 1376
MwoI GCNNNNNNNGC 4 cut(s) 11, 120, 972, 1500
NaeI GCCGGC 1 cut(s) 112
NdeI CATATG 1 cut(s) 699
NdeII GATC 9 cut(s) 180, 367, 868, 1053, 1687, 1896, 1963, 2071, 2096
NgoMIV GCCGGC 1 cut(s) 110
NmeAIII GCCGAG 3 cut(s) 601, 876, 1822
NmuCI GTSAC 6 cut(s) 333, 558, 755, 926, 1544, 1726
NspI RCATGY 5 cut(s) 297, 1002, 1185, 1713, 1739
PaeI GCATGC 1 cut(s) 1739
PagI TCATGA 5 cut(s) 31, 364, 865, 1114, 1156
PasI CCCWGGG 1 cut(s) 173
PciI ACATGT 3 cut(s) 293, 998, 1709
PciSI GCTCTTC 1 cut(s) 1113
PcsI WCGNNNNNNNCGW 1 cut(s) 486
PctI GAATGC 2 cut(s) 467, 920
PdiI GCCGGC 1 cut(s) 112
PfeI GAWTC 4 cut(s) 741, 1907, 2003, 2051
PkrI GCNGC 2 cut(s) 86, 1434
PleI GAGTC 5 cut(s) 221, 265, 436, 565, 1733
PmaCI CACGTG 1 cut(s) 481
PmlI CACGTG 1 cut(s) 481
PpsI GAGTC 5 cut(s) 221, 265, 436, 565, 1733
Ppu21I YACGTR 1 cut(s) 481
PscI ACATGT 3 cut(s) 293, 998, 1709
PshBI ATTAAT 1 cut(s) 1313
Psp6I CCWGG 1 cut(s) 172
PspCI CACGTG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 172
PspPI GGNCC 5 cut(s) 169, 239, 440, 840, 1044
PstNI CAGNNNCTG 1 cut(s) 1173
PsuI RGATCY 2 cut(s) 1687, 1896
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 6 cut(s) 107, 667, 947, 1307, 1379, 1749
RsaNI GTAC 6 cut(s) 106, 666, 946, 1306, 1378, 1748
RseI CAYNNNNRTG 4 cut(s) 93, 369, 933, 1313
SapI GCTCTTC 1 cut(s) 1113
SaqAI TTAA 5 cut(s) 545, 884, 1130, 1313, 1425
SatI GCNGC 2 cut(s) 85, 1433
Sau3AI GATC 9 cut(s) 180, 367, 868, 1053, 1687, 1896, 1963, 2071, 2096
Sau96I GGNCC 5 cut(s) 169, 239, 440, 840, 1044
SchI GAGTC 5 cut(s) 221, 265, 437, 566, 1734
ScrFI CCNGG 1 cut(s) 174
SduI GDGCHC 2 cut(s) 39, 1611
SfaNI GCATC 6 cut(s) 562, 1132, 1490, 1862, 1863, 2026
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 3 cut(s) 239, 440, 1044
SmiMI CAYNNNNRTG 4 cut(s) 93, 369, 933, 1313
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
SphI GCATGC 1 cut(s) 1739
Sse9I AATT 9 cut(s) 27, 416, 643, 1034, 1127, 1199, 1332, 1682, 2127
SsiI CCGC 7 cut(s) 338, 356, 819, 918, 1433, 1650, 1820
SspI AATATT 2 cut(s) 1359, 1658
SspMI CTAG 3 cut(s) 735, 1751, 1775
StyD4I CCNGG 1 cut(s) 172
StyI CCWWGG 1 cut(s) 658
TaaI ACNGT 4 cut(s) 137, 161, 333, 1305
TaiI ACGT 6 cut(s) 483, 762, 1020, 1152, 1768, 2066
TaqI TCGA 7 cut(s) 58, 230, 348, 834, 1809, 1870, 2108
TasI AATT 9 cut(s) 27, 416, 643, 1034, 1127, 1199, 1332, 1682, 2127
TatI WGTACW 1 cut(s) 945
TauI GCSGC 1 cut(s) 1435
TfiI GAWTC 4 cut(s) 741, 1907, 2003, 2051
Tru1I TTAA 5 cut(s) 545, 884, 1130, 1313, 1425
Tru9I TTAA 5 cut(s) 545, 884, 1130, 1313, 1425
TscAI CASTG 6 cut(s) 809, 907, 1054, 1346, 1748, 1865
TseFI GTSAC 6 cut(s) 333, 558, 755, 926, 1544, 1726
TseI GCWGC 1 cut(s) 84
Tsp45I GTSAC 6 cut(s) 333, 558, 755, 926, 1544, 1726
TspGWI ACGGA 3 cut(s) 581, 625, 1873
TspRI CASTG 6 cut(s) 809, 907, 1054, 1346, 1748, 1865
VpaK11BI GGWCC 3 cut(s) 239, 440, 1044
VspI ATTAAT 1 cut(s) 1313
XapI RAATTY 1 cut(s) 2127
XceI RCATGY 5 cut(s) 297, 1002, 1185, 1713, 1739
XcmI CCANNNNNNNNNTGG 1 cut(s) 1587
XmiI GTMKAC 1 cut(s) 18
XspI CTAG 3 cut(s) 735, 1751, 1775
ZraI GACGTC 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.