RchiOBHm_Chr1g0362581

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000226
Physical Location & Seq
Forward (+)
54209595 .. 54212093
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58739

Sequence Viewer

Length: 2409 bp
ATGGATAAGCAGCAGCTTAAACACTTTGGTCACAGGCACCCATTGATGTTGAAGGAACAATATGGCGGTCTACCAATTTCATGTGAGGCATGTGGCGATGCAGTGCTAGGTCCTCACTACAGTTGCAACCAATGTTTCGACAAATTCATTCTCCATAAGTCATGTGCGCAGCTACCAAGGGAGATGCTTCAACACCCTTTGCACAGCAAGCACCCACTTAAACTTCGGACGAAGATTTCAAGAGGCAAATGGTTTGAATGTGATGCTTGTCGGGCACAATCCAATGCCTTCTCCTATAGATGTCGCCCATGTGAGTTCCACCTCGACGTCAAATGTGCTTTCAATTCCAGAAACACAGACAGTATAGTACATTTCAGTCACAAGCATGTATTGAGCTTGAGTACTGAAAATCAATCTGAAGAGGGACCACCACTCTTGTGTACTGGGTGCTTAGAACAAGTCCTTGGCCCTAGATACATTTGCGAAATTCCTTTCGAGAGGGAGAGAAGCTGCTCATCCATTGTTCTACATCAATCTTGTGCGAAGCTATCTCGTGAGATCCAGCACCCGATGCACCACCAACACCCACTTATTCTCAATCAAAATGGAGCACGAGAATCCCACTGTGATGCTTGTGGCAAAGATTGCAGCCGCAGATTCAATTACAGTTGTTTCCGATGTGACTTCAACCTCGACCTCAAATGTGCTTCCGAGAAAGGCTTCAAACATTTCAGTCACGAGCATCCATTAATGTTCCAGAAGGGGGGAGGAGACGACAAGAAGAAAGGATATACTGGTCCACTAGTTGTTTGCGATGGGTGCCAGAACCACATACTTGGCCCTAGTTACACTTGCATCAGTACATATCGCGGTCTTAAATGCTGTTTCAATCTCCACAAGTCATGTGCAGACTTACCCCTTGAGATTCGGCACCCAGTACACCGTCAACATCCGCTTTTTCTTCTCAATACAATTGAGAATATCAGAGTTAAAAAATGCTCATGTAATGCCTGCAACCAACCTTGCAGATATCGCTACAGCTGTTCCATATGCGATTTCAACCTTGACCTCAATTGTGCCTCCAATTGGCGAAAAATTATAGACACTGAATCTCATGAGCATCAGTTTACGGTGATCCCCAGGAAGGAAATGGCCCAGCTCCACCTTATATGTGACGTTTGTGGGGAGTACTGGAGTCGCGCTGCCTACTACTTCTGTAGCATCTGCCAGCTCTGGGTCCATAAGGAATGTGCTTCATTTCCACGCGACACCAAAATACCGGAGCACCAACACCGCCTCAAGCTAACCTGGTCCCTTGAAGACATTTACCCCAAGGACCACGTTTGTAAAATCTGCTCTACGATTATTGATAAGTGTCGTACTGTATATTATTGTCAGGAATGTTGCGGATATGTTGCCCACACTACATGCATGGCAGTTGAGTACTTCCAGGAGGAAGCAAACAAAAACAGAACCGGTAGTATTGAAGATGATGATTATGAAATAATTTCTTGTCAGGGTTGCATTCGACCCATCACTGAAGACTTCTACAGCTGTACTAAACAAGATGAAGAATCTTGCCATTTCTATCTCCACAAAACTTGTGCTCGATTGCCAGAAAGGACGCTTCTCCCTTTGCTTCACCAACACCAGTTAATACTCCTCGCTCGGGCGCCTTCTATTGACGGCGTGTTTCAATGTTCTATATGTGGTATCTTTCACCAAGGCTTTGTATACAGTTGTGAGGATCAATGTGCTTTGCCAACCGGAAAAAACCCTTTCTACCTTGACCTTGAGTGCAGCATTTATTGGGAGAACAGAGATCTTAAACATGAGTCTCATGCTCACCCCCTCCTCCTCGAAAAAAATTGGGAGGACGTCTGTTGCAGGGGTTGTGGTTCAAAAATATTTTTCTTATTCAGTTGTAAGAGATGCAATTTTCATCTTTGCATAGCCTGTGTTAGATTACCTCTTACTGCTAGGCACCAGTACGACAAGCATCCTCTAAAGCTCACCTATGAAAGTATTGAAGACGAGCTAGGTGAATACTACTGTGAGATATGTGAAGGAAAAAGGTATCCAGCACATTGGTTCTACTGGTGCAAAGAGTGCGAGTTTGACTGTCATCCTCATTGCATTATAGGGAGGTATCCTCAAGTTAAGTTGGGGAGCACTTACAAGCACGACGCTCATGTCCAACACCCCGTCACTCTTGTTAGCAAGTGGAAGAGCCCCATTCGAGGCGATAAGAGAGACAACATTCTTCCTTGTGAGAAGTGCGGTGAACCTTGCCAAGGATTAGTATTTGAATGCAGAGAGTGCAATATAAATTTCCATCGAGACGGATGTTGTGGAACTACACTTTCAGAAAGTTCTCGCAGGTCTCCTCAGATCGAAGAGCTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

802

Amino Acids

92.92

Weight (kDa)

7.42

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 10 - 56 3.6e-08 C1 domain
C1_2 PF03107 66 - 113 3.5e-10 C1 domain
C1_2 PF03107 192 - 236 4.9e-09 C1 domain
C1_2 PF03107 313 - 360 3.6e-08 C1 domain
C1_2 PF03107 371 - 418 7.9e-06 C1 domain
C1_2 PF03107 428 - 478 2.9e-06 C1 domain
C1_2 PF03107 664 - 713 1.2e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2192
AatII GACGTC 2 cut(s) 330, 1881
Acc16I TGCGCA 1 cut(s) 168
Acc36I ACCTGC 1 cut(s) 2370
AccB1I GGYRCC 5 cut(s) 36, 819, 930, 1672, 1983
AccI GTMKAC 2 cut(s) 70, 1734
AccII CGCG 3 cut(s) 870, 1200, 1266
AciI CCGC 7 cut(s) 66, 652, 870, 953, 1294, 1407, 2280
AclWI GGATC 3 cut(s) 553, 1129, 1755
AcsI RAATTY 3 cut(s) 143, 486, 2329
AcuI CTGAAG 2 cut(s) 438, 1560
AcyI GRCGYC 3 cut(s) 327, 1673, 1878
AfiI CCNNNNNNNGG 7 cut(s) 763, 1086, 1144, 1234, 1669, 2240, 2294
AgeI ACCGGT 1 cut(s) 1475
AhlI ACTAGT 1 cut(s) 802
AjnI CCWGG 3 cut(s) 1139, 1307, 1449
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AleI CACNNNNGTG 1 cut(s) 436
Alw21I GWGCWC 4 cut(s) 613, 1287, 1609, 2174
Alw26I GTCTC 5 cut(s) 765, 1842, 2247, 2334, 2388
AlwI GGATC 3 cut(s) 553, 1129, 1755
Ama87I CYCGRG 1 cut(s) 1668
AoxI GGCC 3 cut(s) 466, 838, 1152
ApeKI GCWGC 7 cut(s) 10, 13, 169, 510, 648, 1202, 1800
ApoI RAATTY 3 cut(s) 143, 486, 2329
AseI ATTAAT 1 cut(s) 749
AsiGI ACCGGT 1 cut(s) 1475
Asp700I GAANNNNTTC 1 cut(s) 719
AspLEI GCGC 3 cut(s) 169, 1202, 1675
AspS9I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1237, 1311, 1336
AsuHPI GGTGA 7 cut(s) 1144, 1634, 1712, 1838, 2005, 2054, 2294
AvaI CYCGRG 1 cut(s) 1668
AvaII GGWCC 6 cut(s) 110, 425, 797, 1237, 1311, 1336
BaeGI GKGCMC 1 cut(s) 277
BanI GGYRCC 5 cut(s) 36, 819, 930, 1672, 1983
BanII GRGCYC 1 cut(s) 2234
BauI CACGAG 3 cut(s) 552, 612, 737
BbsI GAAGAC 3 cut(s) 1326, 1548, 2037
Bbv12I GWGCWC 4 cut(s) 613, 1287, 1609, 2174
BbvI GCAGC 7 cut(s) 22, 25, 181, 497, 660, 1189, 1812
BccI CCATC 3 cut(s) 809, 1541, 2343
BceAI ACGGC 1 cut(s) 1702
BciT130I CCWGG 3 cut(s) 1141, 1309, 1451
BciVI GTATCC 2 cut(s) 2088, 2160
BcoDI GTCTC 5 cut(s) 765, 1842, 2247, 2334, 2388
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 6 cut(s) 107, 471, 803, 843, 1980, 2039
BfmI CTRYAG 5 cut(s) 118, 295, 1036, 1216, 1549
BfoI RGCGCY 1 cut(s) 1676
BfuAI ACCTGC 1 cut(s) 2370
BfuI GTATCC 2 cut(s) 2088, 2160
BglII AGATCT 1 cut(s) 1822
BisI GCNGC 8 cut(s) 11, 14, 170, 511, 649, 652, 1203, 1801
BlsI GCNGC 8 cut(s) 12, 15, 171, 512, 650, 653, 1204, 1802
BmcAI AGTACT 3 cut(s) 403, 1190, 1445
Bme1390I CCNGG 3 cut(s) 1141, 1309, 1451
Bme18I GGWCC 6 cut(s) 110, 425, 797, 1237, 1311, 1336
BmeT110I CYCGRG 1 cut(s) 1668
BmgT120I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1237, 1311, 1336
BmiI GGNNCC 8 cut(s) 38, 426, 821, 932, 1238, 1313, 1674, 1985
BmrFI CCNGG 3 cut(s) 1141, 1309, 1451
BmrI ACTGGG 2 cut(s) 453, 929
BmuI ACTGGG 2 cut(s) 453, 929
BpiI GAAGAC 3 cut(s) 1326, 1548, 2037
BplI GAGNNNNNCTC 2 cut(s) 2137, 2169
BpmI CTGGAG 1 cut(s) 1213
BpuEI CTTGAG 5 cut(s) 418, 941, 1283, 1814, 2139
BsaHI GRCGYC 3 cut(s) 327, 1673, 1878
BsaI GGTCTC 1 cut(s) 2388
BsaJI CCNNGG 6 cut(s) 176, 463, 1139, 1332, 1723, 2293
BsaWI WCCGGW 3 cut(s) 1279, 1475, 1766
Bsc4I CCNNNNNNNGG 7 cut(s) 763, 1086, 1144, 1234, 1669, 2240, 2294
Bse118I RCCGGY 1 cut(s) 1475
Bse1I ACTGG 7 cut(s) 448, 799, 935, 1196, 1651, 1987, 2102
Bse3DI GCAATG 1 cut(s) 2131
BseBI CCWGG 3 cut(s) 1141, 1309, 1451
BseDI CCNNGG 6 cut(s) 176, 463, 1139, 1332, 1723, 2293
BseGI GGATG 6 cut(s) 515, 742, 949, 1999, 2125, 2351
BseLI CCNNNNNNNGG 7 cut(s) 763, 1086, 1144, 1234, 1669, 2240, 2294
BseMI GCAATG 1 cut(s) 2131
BseMII CTCAG 1 cut(s) 2402
BseNI ACTGG 7 cut(s) 448, 799, 935, 1196, 1651, 1987, 2102
BseRI GAGGAG 5 cut(s) 783, 1652, 1844, 1847, 2376
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 7 cut(s) 22, 25, 181, 497, 660, 1189, 1812
BseYI CCCAGC 1 cut(s) 1155
BsgI GTGCAG 2 cut(s) 927, 1819
Bsh1236I CGCG 3 cut(s) 870, 1200, 1266
BshFI GGCC 3 cut(s) 468, 840, 1154
BshNI GGYRCC 5 cut(s) 36, 819, 930, 1672, 1983
BshTI ACCGGT 1 cut(s) 1475
BsiHKAI GWGCWC 4 cut(s) 613, 1287, 1609, 2174
BsiHKCI CYCGRG 1 cut(s) 1668
BsiSI CCGG 3 cut(s) 1280, 1476, 1767
BslFI GGGAC 2 cut(s) 438, 1297
BslI CCNNNNNNNGG 7 cut(s) 763, 1086, 1144, 1234, 1669, 2240, 2294
BsmAI GTCTC 5 cut(s) 765, 1842, 2247, 2334, 2388
BsmBI CGTCTC 2 cut(s) 765, 2334
BsmFI GGGAC 2 cut(s) 438, 1297
BsmI GAATGC 2 cut(s) 1524, 2315
BsnI GGCC 3 cut(s) 468, 840, 1154
Bso31I GGTCTC 1 cut(s) 2388
BsoBI CYCGRG 1 cut(s) 1668
Bsp1286I GDGCHC 6 cut(s) 277, 613, 1287, 1609, 2174, 2234
Bsp143I GATC 5 cut(s) 558, 1134, 1747, 1822, 2391
BspACI CCGC 7 cut(s) 66, 652, 870, 953, 1294, 1407, 2280
BspANI GGCC 3 cut(s) 468, 840, 1154
BspCNI CTCAG 1 cut(s) 2401
BspFNI CGCG 3 cut(s) 870, 1200, 1266
BspHI TCATGA 1 cut(s) 1114
BspLI GGNNCC 8 cut(s) 38, 426, 821, 932, 1238, 1313, 1674, 1985
BspMI ACCTGC 1 cut(s) 2370
BspPI GGATC 3 cut(s) 553, 1129, 1755
BspQI GCTCTTC 2 cut(s) 2222, 2391
BspT107I GGYRCC 5 cut(s) 36, 819, 930, 1672, 1983
BspTNI GGTCTC 1 cut(s) 2388
BsrDI GCAATG 1 cut(s) 2131
BsrFI RCCGGY 1 cut(s) 1475
BsrI ACTGG 7 cut(s) 448, 799, 935, 1196, 1651, 1987, 2102
BssAI RCCGGY 1 cut(s) 1475
BssECI CCNNGG 6 cut(s) 176, 463, 1139, 1332, 1723, 2293
BssMI GATC 5 cut(s) 558, 1134, 1747, 1822, 2391
BssNAI GTATAC 1 cut(s) 1735
BssNI GRCGYC 3 cut(s) 327, 1673, 1878
BssSI CACGAG 3 cut(s) 552, 612, 737
BssT1I CCWWGG 5 cut(s) 176, 463, 1332, 1723, 2293
Bst1107I GTATAC 1 cut(s) 1735
Bst2BI CACGAG 3 cut(s) 552, 612, 737
Bst2UI CCWGG 3 cut(s) 1141, 1309, 1451
Bst6I CTCTTC 3 cut(s) 414, 2222, 2391
BstACI GRCGYC 3 cut(s) 327, 1673, 1878
BstAPI GCANNNNNTGC 4 cut(s) 571, 645, 2109, 2319
BstC8I GCNNGC 3 cut(s) 209, 1012, 1229
BstDEI CTNAG 3 cut(s) 451, 2388, 2402
BstENI CCTNNNNNAGG 1 cut(s) 2292
BstF5I GGATG 6 cut(s) 515, 742, 949, 1999, 2125, 2351
BstFNI CGCG 3 cut(s) 870, 1200, 1266
BstH2I RGCGCY 1 cut(s) 1676
BstHHI GCGC 3 cut(s) 169, 1202, 1675
BstKTI GATC 5 cut(s) 561, 1137, 1750, 1825, 2394
BstMAI GTCTC 5 cut(s) 765, 1842, 2247, 2334, 2388
BstMBI GATC 5 cut(s) 558, 1134, 1747, 1822, 2391
BstMWI GCNNNNNNNGC 8 cut(s) 208, 272, 571, 645, 819, 1032, 2109, 2319
BstNI CCWGG 3 cut(s) 1141, 1309, 1451
BstNSI RCATGY 3 cut(s) 93, 389, 1431
BstSCI CCNGG 3 cut(s) 1139, 1307, 1449
BstSFI CTRYAG 5 cut(s) 118, 295, 1036, 1216, 1549
BstSLI GKGCMC 1 cut(s) 277
BstUI CGCG 3 cut(s) 870, 1200, 1266
BstV1I GCAGC 7 cut(s) 22, 25, 181, 497, 660, 1189, 1812
BstV2I GAAGAC 3 cut(s) 1326, 1548, 2037
BstX2I RGATCY 2 cut(s) 558, 1822
BstXI CCANNNNNNTGG 2 cut(s) 836, 2088
BstYI RGATCY 2 cut(s) 558, 1822
BstZ17I GTATAC 1 cut(s) 1735
BsuI GTATCC 2 cut(s) 2088, 2160
BsuRI GGCC 3 cut(s) 468, 840, 1154
BtgZI GCGATG 2 cut(s) 111, 828
BtsCI GGATG 6 cut(s) 515, 742, 949, 1999, 2125, 2351
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 4 cut(s) 108, 622, 1104, 1536
BveI ACCTGC 1 cut(s) 2370
Cac8I GCNNGC 3 cut(s) 209, 1012, 1229
CciI TCATGA 1 cut(s) 1114
CfoI GCGC 3 cut(s) 169, 1202, 1675
Cfr10I RCCGGY 1 cut(s) 1475
Cfr13I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1237, 1311, 1336
CseI GACGC 2 cut(s) 1633, 2195
CsiI ACCWGGT 1 cut(s) 1307
CspAI ACCGGT 1 cut(s) 1475
CspCI CAANNNNNGTGG 4 cut(s) 417, 452, 1583, 1618
DdeI CTNAG 3 cut(s) 451, 2388, 2402
DinI GGCGCC 1 cut(s) 1674
DpnI GATC 5 cut(s) 560, 1136, 1749, 1824, 2393
DpnII GATC 5 cut(s) 558, 1134, 1747, 1822, 2391
DrdI GACNNNNNNGTC 1 cut(s) 2192
DseDI GACNNNNNNGTC 1 cut(s) 2192
Eam1104I CTCTTC 3 cut(s) 414, 2222, 2391
EarI CTCTTC 3 cut(s) 414, 2222, 2391
Eco130I CCWWGG 5 cut(s) 176, 463, 1332, 1723, 2293
Eco24I GRGCYC 1 cut(s) 2234
Eco31I GGTCTC 1 cut(s) 2388
Eco32I GATATC 1 cut(s) 1031
Eco47I GGWCC 6 cut(s) 110, 425, 797, 1237, 1311, 1336
Eco57I CTGAAG 2 cut(s) 438, 1560
Eco88I CYCGRG 1 cut(s) 1668
EcoNI CCTNNNNNAGG 1 cut(s) 2292
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 3 cut(s) 1139, 1307, 1449
EcoRV GATATC 1 cut(s) 1031
EcoT14I CCWWGG 5 cut(s) 176, 463, 1332, 1723, 2293
EcoT22I ATGCAT 1 cut(s) 1433
EcoT38I GRGCYC 1 cut(s) 2234
EgeI GGCGCC 1 cut(s) 1674
EheI GGCGCC 1 cut(s) 1674
ErhI CCWWGG 5 cut(s) 176, 463, 1332, 1723, 2293
Esp3I CGTCTC 2 cut(s) 765, 2334
FaqI GGGAC 2 cut(s) 438, 1297
FauNDI CATATG 1 cut(s) 1049
FblI GTMKAC 2 cut(s) 70, 1734
Fnu4HI GCNGC 8 cut(s) 11, 14, 170, 511, 649, 652, 1203, 1801
FokI GGATG 6 cut(s) 502, 729, 936, 1986, 2112, 2358
FriOI GRGCYC 1 cut(s) 2234
Fsp4HI GCNGC 8 cut(s) 11, 14, 170, 511, 649, 652, 1203, 1801
FspBI CTAG 6 cut(s) 107, 471, 803, 843, 1980, 2039
FspI TGCGCA 1 cut(s) 168
GlaI GCGC 3 cut(s) 168, 1201, 1674
GluI GCNGC 8 cut(s) 11, 14, 170, 511, 649, 652, 1203, 1801
GsaI CCCAGC 1 cut(s) 1159
GsuI CTGGAG 1 cut(s) 1213
HaeII RGCGCY 1 cut(s) 1676
HaeIII GGCC 3 cut(s) 468, 840, 1154
HapII CCGG 3 cut(s) 1280, 1476, 1767
HgaI GACGC 2 cut(s) 1633, 2195
HhaI GCGC 3 cut(s) 169, 1202, 1675
Hin1I GRCGYC 3 cut(s) 327, 1673, 1878
Hin6I GCGC 3 cut(s) 167, 1200, 1673
HinP1I GCGC 3 cut(s) 167, 1200, 1673
HincII GTYRAC 1 cut(s) 947
HindII GTYRAC 1 cut(s) 947
HinfI GANTC 7 cut(s) 617, 657, 925, 1109, 1195, 1574, 1835
HpaII CCGG 3 cut(s) 1280, 1476, 1767
HphI GGTGA 7 cut(s) 1144, 1634, 1712, 1838, 2005, 2054, 2294
Hpy166II GTNNAC 8 cut(s) 71, 441, 800, 940, 947, 1128, 1735, 2285
Hpy188I TCNGA 7 cut(s) 228, 418, 677, 712, 986, 2368, 2391
Hpy188III TCNNGA 9 cut(s) 240, 348, 496, 554, 737, 757, 1115, 1397, 2339
Hpy8I GTNNAC 8 cut(s) 71, 441, 800, 940, 947, 1128, 1735, 2285
Hpy99I CGWCG 2 cut(s) 329, 2189
HpyAV CCTTC 6 cut(s) 46, 298, 754, 1138, 1686, 2060
HpyCH4IV ACGT 4 cut(s) 327, 1176, 1341, 1878
HpyF10VI GCNNNNNNNGC 8 cut(s) 208, 272, 571, 645, 819, 1032, 2109, 2319
HpyF3I CTNAG 3 cut(s) 451, 2388, 2402
HpySE526I ACGT 4 cut(s) 327, 1176, 1341, 1878
Hsp92I GRCGYC 3 cut(s) 327, 1673, 1878
HspAI GCGC 3 cut(s) 167, 1200, 1673
KasI GGCGCC 1 cut(s) 1672
Kzo9I GATC 5 cut(s) 558, 1134, 1747, 1822, 2391
LguI GCTCTTC 2 cut(s) 2222, 2391
LmnI GCTCC 4 cut(s) 608, 1164, 1282, 2169
Lsp1109I GCAGC 7 cut(s) 22, 25, 181, 497, 660, 1189, 1812
MabI ACCWGGT 1 cut(s) 1307
MaeI CTAG 6 cut(s) 107, 471, 803, 843, 1980, 2039
MaeII ACGT 4 cut(s) 327, 1176, 1341, 1878
MaeIII GTNAC 7 cut(s) 29, 377, 680, 734, 845, 1172, 2206
MalI GATC 5 cut(s) 560, 1136, 1749, 1824, 2393
MboI GATC 5 cut(s) 558, 1134, 1747, 1822, 2391
MfeI CAATTG 3 cut(s) 972, 1072, 1084
MflI RGATCY 2 cut(s) 558, 1822
MhlI GDGCHC 6 cut(s) 277, 613, 1287, 1609, 2174, 2234
Mly113I GGCGCC 1 cut(s) 1673
MlyI GAGTC 2 cut(s) 1204, 1844
MmeI TCCRAC 1 cut(s) 2221
Mph1103I ATGCAT 1 cut(s) 1433
MroXI GAANNNNTTC 1 cut(s) 719
MseI TTAA 9 cut(s) 18, 219, 749, 876, 990, 1655, 1827, 2160, 2407
MslI CAYNNNNRTG 3 cut(s) 384, 436, 627
MspA1I CMGCKG 2 cut(s) 1041, 1554
MspI CCGG 3 cut(s) 1280, 1476, 1767
MspR9I CCNGG 3 cut(s) 1141, 1309, 1451
MunI CAATTG 3 cut(s) 972, 1072, 1084
Mva1269I GAATGC 2 cut(s) 1524, 2315
MvaI CCWGG 3 cut(s) 1141, 1309, 1451
MvnI CGCG 3 cut(s) 870, 1200, 1266
MwoI GCNNNNNNNGC 8 cut(s) 208, 272, 571, 645, 819, 1032, 2109, 2319
NarI GGCGCC 1 cut(s) 1673
NdeI CATATG 1 cut(s) 1049
NdeII GATC 5 cut(s) 558, 1134, 1747, 1822, 2391
NlaIV GGNNCC 8 cut(s) 38, 426, 821, 932, 1238, 1313, 1674, 1985
NmuCI GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2206
NsbI TGCGCA 1 cut(s) 168
NsiI ATGCAT 1 cut(s) 1433
NspI RCATGY 3 cut(s) 93, 389, 1431
OliI CACNNNNGTG 1 cut(s) 436
PagI TCATGA 1 cut(s) 1114
PciSI GCTCTTC 2 cut(s) 2222, 2391
PctI GAATGC 2 cut(s) 1524, 2315
PdmI GAANNNNTTC 1 cut(s) 719
PfeI GAWTC 5 cut(s) 617, 657, 925, 1109, 1574
PfoI TCCNGGA 1 cut(s) 1449
PinAI ACCGGT 1 cut(s) 1475
PkrI GCNGC 8 cut(s) 12, 15, 171, 512, 650, 653, 1204, 1802
PleI GAGTC 2 cut(s) 1203, 1843
PluTI GGCGCC 1 cut(s) 1676
PpsI GAGTC 2 cut(s) 1203, 1843
PpuMI RGGWCCY 1 cut(s) 110
PshBI ATTAAT 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 3 cut(s) 1139, 1307, 1449
PspFI CCCAGC 1 cut(s) 1155
PspGI CCWGG 3 cut(s) 1139, 1307, 1449
PspN4I GGNNCC 8 cut(s) 38, 426, 821, 932, 1238, 1313, 1674, 1985
PspPI GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1237, 1311, 1336
PspPPI RGGWCCY 1 cut(s) 110
PsuI RGATCY 2 cut(s) 558, 1822
PvuII CAGCTG 2 cut(s) 1041, 1554
RseI CAYNNNNRTG 3 cut(s) 384, 436, 627
SapI GCTCTTC 2 cut(s) 2222, 2391
SaqAI TTAA 9 cut(s) 18, 219, 749, 876, 990, 1655, 1827, 2160, 2407
SatI GCNGC 8 cut(s) 11, 14, 170, 511, 649, 652, 1203, 1801
Sau3AI GATC 5 cut(s) 558, 1134, 1747, 1822, 2391
Sau96I GGNCC 9 cut(s) 110, 425, 467, 797, 839, 1153, 1237, 1311, 1336
ScaI AGTACT 3 cut(s) 403, 1190, 1445
SchI GAGTC 2 cut(s) 1204, 1844
ScrFI CCNGG 3 cut(s) 1141, 1309, 1451
SduI GDGCHC 6 cut(s) 277, 613, 1287, 1609, 2174, 2234
SexAI ACCWGGT 1 cut(s) 1307
SfcI CTRYAG 5 cut(s) 118, 295, 1036, 1216, 1549
SfoI GGCGCC 1 cut(s) 1674
SinI GGWCC 6 cut(s) 110, 425, 797, 1237, 1311, 1336
SmiMI CAYNNNNRTG 3 cut(s) 384, 436, 627
SmlI CTYRAG 5 cut(s) 397, 920, 1298, 1793, 2154
SmoI CTYRAG 5 cut(s) 397, 920, 1298, 1793, 2154
SpeI ACTAGT 1 cut(s) 802
SsiI CCGC 7 cut(s) 66, 652, 870, 953, 1294, 1407, 2280
SspDI GGCGCC 1 cut(s) 1672
SspI AATATT 1 cut(s) 1908
SspMI CTAG 6 cut(s) 107, 471, 803, 843, 1980, 2039
StyD4I CCNGG 3 cut(s) 1139, 1307, 1449
StyI CCWWGG 5 cut(s) 176, 463, 1332, 1723, 2293
TaiI ACGT 4 cut(s) 330, 1179, 1344, 1881
TatI WGTACW 8 cut(s) 367, 401, 440, 860, 937, 1188, 1443, 1556
TauI GCSGC 1 cut(s) 654
TfiI GAWTC 5 cut(s) 617, 657, 925, 1109, 1574
Tru1I TTAA 9 cut(s) 18, 219, 749, 876, 990, 1655, 1827, 2160, 2407
Tru9I TTAA 9 cut(s) 18, 219, 749, 876, 990, 1655, 1827, 2160, 2407
TscAI CASTG 4 cut(s) 108, 629, 1111, 1543
TseFI GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2206
TseI GCWGC 7 cut(s) 10, 13, 169, 510, 648, 1202, 1800
Tsp45I GTSAC 6 cut(s) 29, 377, 680, 734, 1172, 2206
TspDTI ATGAA 7 cut(s) 69, 136, 1245, 1515, 1584, 1931, 2034
TspGWI ACGGA 1 cut(s) 2358
TspRI CASTG 4 cut(s) 108, 629, 1111, 1543
VpaK11BI GGWCC 6 cut(s) 110, 425, 797, 1237, 1311, 1336
VspI ATTAAT 1 cut(s) 749
XagI CCTNNNNNAGG 1 cut(s) 2292
XapI RAATTY 3 cut(s) 143, 486, 2329
XceI RCATGY 3 cut(s) 93, 389, 1431
XcmI CCANNNNNNNNNTGG 1 cut(s) 1147
XmiI GTMKAC 2 cut(s) 70, 1734
XmnI GAANNNNTTC 1 cut(s) 719
XspI CTAG 6 cut(s) 107, 471, 803, 843, 1980, 2039
ZraI GACGTC 2 cut(s) 328, 1879
ZrmI AGTACT 3 cut(s) 403, 1190, 1445
Zsp2I ATGCAT 1 cut(s) 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.