Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1608 |
| Acc16I | TGCGCA | 1 cut(s) | 1237 |
| Acc65I | GGTACC | 1 cut(s) | 667 |
| AccB1I | GGYRCC | 1 cut(s) | 667 |
| AciI | CCGC | 2 cut(s) | 1329, 1565 |
| AclI | AACGTT | 2 cut(s) | 799, 997 |
| AclWI | GGATC | 2 cut(s) | 436, 1522 |
| AcoI | YGGCCR | 1 cut(s) | 1505 |
| AcsI | RAATTY | 1 cut(s) | 970 |
| AcvI | CACGTG | 1 cut(s) | 470 |
| AdeI | CACNNNGTG | 1 cut(s) | 857 |
| AfaI | GTAC | 4 cut(s) | 403, 669, 940, 1350 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 187, 328, 1537, 1561 |
| AflIII | ACRYGT | 2 cut(s) | 469, 989 |
| AgsI | TTSAA | 7 cut(s) | 428, 618, 662, 1077, 1168, 1356, 1418 |
| AluBI | AGCT | 3 cut(s) | 201, 452, 952 |
| AluI | AGCT | 3 cut(s) | 201, 452, 952 |
| Alw26I | GTCTC | 3 cut(s) | 137, 772, 1502 |
| AlwI | GGATC | 2 cut(s) | 436, 1522 |
| AoxI | GGCC | 1 cut(s) | 1505 |
| ApeKI | GCWGC | 1 cut(s) | 1587 |
| ApoI | RAATTY | 1 cut(s) | 970 |
| Asp718I | GGTACC | 1 cut(s) | 667 |
| AspLEI | GCGC | 3 cut(s) | 884, 959, 1238 |
| AsuHPI | GGTGA | 2 cut(s) | 1310, 1553 |
| AsuII | TTCGAA | 2 cut(s) | 705, 966 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 484, 517 |
| BanI | GGYRCC | 1 cut(s) | 667 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1332, 1364 |
| BauI | CACGAG | 1 cut(s) | 137 |
| BbrPI | CACGTG | 1 cut(s) | 470 |
| BbsI | GAAGAC | 2 cut(s) | 416, 576 |
| BbvI | GCAGC | 1 cut(s) | 1574 |
| BccI | CCATC | 3 cut(s) | 453, 504, 641 |
| BciVI | GTATCC | 4 cut(s) | 252, 299, 1436, 1561 |
| BclI | TGATCA | 1 cut(s) | 1273 |
| BcoDI | GTCTC | 3 cut(s) | 137, 772, 1502 |
| BfaI | CTAG | 1 cut(s) | 782 |
| BfuI | GTATCC | 4 cut(s) | 252, 299, 1436, 1561 |
| BisI | GCNGC | 1 cut(s) | 1588 |
| BlsI | GCNGC | 1 cut(s) | 1589 |
| BmiI | GGNNCC | 3 cut(s) | 669, 789, 1390 |
| BmrI | ACTGGG | 2 cut(s) | 537, 1038 |
| BmsI | GCATC | 5 cut(s) | 5, 58, 373, 465, 1075 |
| BmuI | ACTGGG | 2 cut(s) | 537, 1038 |
| BpiI | GAAGAC | 2 cut(s) | 416, 576 |
| Bpu14I | TTCGAA | 2 cut(s) | 705, 966 |
| BpuEI | CTTGAG | 4 cut(s) | 170, 740, 1129, 1417 |
| BsaAI | YACGTR | 1 cut(s) | 470 |
| BsaBI | GATNNNNATC | 2 cut(s) | 365, 1275 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 187, 328, 1537, 1561 |
| Bse1I | ACTGG | 3 cut(s) | 532, 1012, 1033 |
| Bse3DI | GCAATG | 1 cut(s) | 1384 |
| Bse8I | GATNNNNATC | 2 cut(s) | 365, 1275 |
| BseGI | GGATG | 6 cut(s) | 10, 652, 1039, 1105, 1276, 1351 |
| BseJI | GATNNNNATC | 2 cut(s) | 365, 1275 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 187, 328, 1537, 1561 |
| BseMI | GCAATG | 1 cut(s) | 1384 |
| BseNI | ACTGG | 3 cut(s) | 532, 1012, 1033 |
| BseRI | GAGGAG | 1 cut(s) | 24 |
| BseXI | GCAGC | 1 cut(s) | 1574 |
| BshFI | GGCC | 1 cut(s) | 1507 |
| BshNI | GGYRCC | 1 cut(s) | 667 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 187, 328, 1537, 1561 |
| BsmAI | GTCTC | 3 cut(s) | 137, 772, 1502 |
| BsmBI | CGTCTC | 1 cut(s) | 1502 |
| BsmI | GAATGC | 2 cut(s) | 149, 1318 |
| BsnI | GGCC | 1 cut(s) | 1507 |
| Bsp119I | TTCGAA | 2 cut(s) | 705, 966 |
| Bsp1407I | TGTACA | 1 cut(s) | 1348 |
| Bsp143I | GATC | 4 cut(s) | 441, 715, 1273, 1527 |
| BspACI | CCGC | 2 cut(s) | 1329, 1565 |
| BspANI | GGCC | 1 cut(s) | 1507 |
| BspHI | TCATGA | 4 cut(s) | 334, 438, 490, 871 |
| BspLI | GGNNCC | 3 cut(s) | 669, 789, 1390 |
| BspPI | GGATC | 2 cut(s) | 436, 1522 |
| BspT104I | TTCGAA | 2 cut(s) | 705, 966 |
| BspT107I | GGYRCC | 1 cut(s) | 667 |
| BsrDI | GCAATG | 1 cut(s) | 1384 |
| BsrGI | TGTACA | 1 cut(s) | 1348 |
| BsrI | ACTGG | 3 cut(s) | 532, 1012, 1033 |
| BssMI | GATC | 4 cut(s) | 441, 715, 1273, 1527 |
| BssSI | CACGAG | 1 cut(s) | 137 |
| Bst2BI | CACGAG | 1 cut(s) | 137 |
| Bst4CI | ACNGT | 4 cut(s) | 263, 488, 1298, 1448 |
| Bst6I | CTCTTC | 3 cut(s) | 822, 1335, 1401 |
| BstAUI | TGTACA | 1 cut(s) | 1348 |
| BstBAI | YACGTR | 1 cut(s) | 470 |
| BstBI | TTCGAA | 2 cut(s) | 705, 966 |
| BstC8I | GCNNGC | 4 cut(s) | 73, 454, 589, 811 |
| BstDEI | CTNAG | 1 cut(s) | 327 |
| BstF5I | GGATG | 6 cut(s) | 10, 652, 1039, 1105, 1276, 1351 |
| BstHHI | GCGC | 3 cut(s) | 884, 959, 1238 |
| BstKTI | GATC | 4 cut(s) | 444, 718, 1276, 1530 |
| BstMAI | GTCTC | 3 cut(s) | 137, 772, 1502 |
| BstMBI | GATC | 4 cut(s) | 441, 715, 1273, 1527 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 846, 1335, 1521 |
| BstNSI | RCATGY | 5 cut(s) | 390, 563, 813, 993, 1236 |
| BstV1I | GCAGC | 1 cut(s) | 1574 |
| BstV2I | GAAGAC | 2 cut(s) | 416, 576 |
| BstX2I | RGATCY | 1 cut(s) | 1527 |
| BstYI | RGATCY | 1 cut(s) | 1527 |
| BsuI | GTATCC | 4 cut(s) | 252, 299, 1436, 1561 |
| BsuRI | GGCC | 1 cut(s) | 1507 |
| BtgZI | GCGATG | 1 cut(s) | 1081 |
| BtsCI | GGATG | 6 cut(s) | 10, 652, 1039, 1105, 1276, 1351 |
| BtsIMutI | CAGTG | 3 cut(s) | 259, 525, 1005 |
| Cac8I | GCNNGC | 4 cut(s) | 73, 454, 589, 811 |
| CciI | TCATGA | 4 cut(s) | 334, 438, 490, 871 |
| CfoI | GCGC | 3 cut(s) | 884, 959, 1238 |
| Csp6I | GTAC | 4 cut(s) | 402, 668, 939, 1349 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1366, 1401 |
| CviQI | GTAC | 4 cut(s) | 402, 668, 939, 1349 |
| DdeI | CTNAG | 1 cut(s) | 327 |
| DpnI | GATC | 4 cut(s) | 443, 717, 1275, 1529 |
| DpnII | GATC | 4 cut(s) | 441, 715, 1273, 1527 |
| DraI | TTTAAA | 1 cut(s) | 1093 |
| DraIII | CACNNNGTG | 1 cut(s) | 857 |
| EaeI | YGGCCR | 1 cut(s) | 1505 |
| Eam1104I | CTCTTC | 3 cut(s) | 822, 1335, 1401 |
| EarI | CTCTTC | 3 cut(s) | 822, 1335, 1401 |
| EciI | GGCGGA | 1 cut(s) | 1580 |
| Eco72I | CACGTG | 1 cut(s) | 470 |
| EcoT22I | ATGCAT | 3 cut(s) | 149, 388, 1090 |
| Esp3I | CGTCTC | 1 cut(s) | 1502 |
| FauI | CCCGC | 1 cut(s) | 1322 |
| FauNDI | CATATG | 2 cut(s) | 583, 1583 |
| FbaI | TGATCA | 1 cut(s) | 1273 |
| Fnu4HI | GCNGC | 1 cut(s) | 1588 |
| FokI | GGATG | 6 cut(s) | 17, 659, 1046, 1092, 1263, 1358 |
| Fsp4HI | GCNGC | 1 cut(s) | 1588 |
| FspBI | CTAG | 1 cut(s) | 782 |
| FspI | TGCGCA | 1 cut(s) | 1237 |
| GlaI | GCGC | 3 cut(s) | 883, 958, 1237 |
| GluI | GCNGC | 1 cut(s) | 1588 |
| HaeIII | GGCC | 1 cut(s) | 1507 |
| HhaI | GCGC | 3 cut(s) | 884, 959, 1238 |
| Hin6I | GCGC | 3 cut(s) | 882, 957, 1236 |
| HinP1I | GCGC | 3 cut(s) | 882, 957, 1236 |
| HincII | GTYRAC | 1 cut(s) | 995 |
| HindII | GTYRAC | 1 cut(s) | 995 |
| HinfI | GANTC | 1 cut(s) | 875 |
| HphI | GGTGA | 2 cut(s) | 1310, 1553 |
| Hpy166II | GTNNAC | 2 cut(s) | 266, 995 |
| Hpy188I | TCNGA | 2 cut(s) | 832, 1084 |
| Hpy188III | TCNNGA | 6 cut(s) | 335, 439, 491, 777, 872, 1440 |
| Hpy8I | GTNNAC | 2 cut(s) | 266, 995 |
| HpyAV | CCTTC | 5 cut(s) | 170, 174, 382, 656, 1148 |
| HpyCH4III | ACNGT | 4 cut(s) | 263, 488, 1298, 1448 |
| HpyCH4IV | ACGT | 4 cut(s) | 469, 799, 997, 1186 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 846, 1335, 1521 |
| HpyF3I | CTNAG | 1 cut(s) | 327 |
| HpySE526I | ACGT | 4 cut(s) | 469, 799, 997, 1186 |
| HspAI | GCGC | 3 cut(s) | 882, 957, 1236 |
| KpnI | GGTACC | 1 cut(s) | 671 |
| Ksp22I | TGATCA | 1 cut(s) | 1273 |
| Kzo9I | GATC | 4 cut(s) | 441, 715, 1273, 1527 |
| LmnI | GCTCC | 1 cut(s) | 1394 |
| LpnPI | CCDG | 4 cut(s) | 513, 993, 1014, 1425 |
| Lsp1109I | GCAGC | 1 cut(s) | 1574 |
| LweI | GCATC | 5 cut(s) | 5, 58, 373, 465, 1075 |
| MaeI | CTAG | 1 cut(s) | 782 |
| MaeII | ACGT | 4 cut(s) | 469, 799, 997, 1186 |
| MaeIII | GTNAC | 4 cut(s) | 190, 985, 1160, 1460 |
| MalI | GATC | 4 cut(s) | 443, 717, 1275, 1529 |
| MboI | GATC | 4 cut(s) | 441, 715, 1273, 1527 |
| MflI | RGATCY | 1 cut(s) | 1527 |
| MluCI | AATT | 6 cut(s) | 970, 1077, 1168, 1219, 1509, 1603 |
| MnlI | CCTC | 9 cut(s) | 45, 133, 192, 255, 778, 903, 1290, 1336, 1617 |
| Mph1103I | ATGCAT | 3 cut(s) | 149, 388, 1090 |
| MseI | TTAA | 3 cut(s) | 150, 1092, 1602 |
| MslI | CAYNNNNRTG | 4 cut(s) | 61, 339, 564, 1061 |
| Mva1269I | GAATGC | 2 cut(s) | 149, 1318 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 846, 1335, 1521 |
| NdeI | CATATG | 2 cut(s) | 583, 1583 |
| NdeII | GATC | 4 cut(s) | 441, 715, 1273, 1527 |
| NlaIV | GGNNCC | 3 cut(s) | 669, 789, 1390 |
| NmeAIII | GCCGAG | 1 cut(s) | 1483 |
| NmuCI | GTSAC | 2 cut(s) | 190, 1160 |
| NsbI | TGCGCA | 1 cut(s) | 1237 |
| NsiI | ATGCAT | 3 cut(s) | 149, 388, 1090 |
| NspI | RCATGY | 5 cut(s) | 390, 563, 813, 993, 1236 |
| NspV | TTCGAA | 2 cut(s) | 705, 966 |
| PaeI | GCATGC | 1 cut(s) | 813 |
| PagI | TCATGA | 4 cut(s) | 334, 438, 490, 871 |
| PciI | ACATGT | 1 cut(s) | 989 |
| PctI | GAATGC | 2 cut(s) | 149, 1318 |
| PfeI | GAWTC | 1 cut(s) | 875 |
| PkrI | GCNGC | 1 cut(s) | 1589 |
| PmaCI | CACGTG | 1 cut(s) | 470 |
| PmlI | CACGTG | 1 cut(s) | 470 |
| Ppu21I | YACGTR | 1 cut(s) | 470 |
| PscI | ACATGT | 1 cut(s) | 989 |
| PsiI | TTATAA | 1 cut(s) | 1608 |
| Psp1406I | AACGTT | 2 cut(s) | 799, 997 |
| PspCI | CACGTG | 1 cut(s) | 470 |
| PspN4I | GGNNCC | 3 cut(s) | 669, 789, 1390 |
| PsuI | RGATCY | 1 cut(s) | 1527 |
| RsaI | GTAC | 4 cut(s) | 403, 669, 940, 1350 |
| RsaNI | GTAC | 4 cut(s) | 402, 668, 939, 1349 |
| RseI | CAYNNNNRTG | 4 cut(s) | 61, 339, 564, 1061 |
| SaqAI | TTAA | 3 cut(s) | 150, 1092, 1602 |
| SatI | GCNGC | 1 cut(s) | 1588 |
| Sau3AI | GATC | 4 cut(s) | 441, 715, 1273, 1527 |
| SfaNI | GCATC | 5 cut(s) | 5, 58, 373, 465, 1075 |
| SfuI | TTCGAA | 2 cut(s) | 705, 966 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 61, 339, 564, 1061 |
| SmlI | CTYRAG | 4 cut(s) | 185, 755, 1144, 1432 |
| SmoI | CTYRAG | 4 cut(s) | 185, 755, 1144, 1432 |
| SphI | GCATGC | 1 cut(s) | 813 |
| Sse9I | AATT | 6 cut(s) | 970, 1077, 1168, 1219, 1509, 1603 |
| SsiI | CCGC | 2 cut(s) | 1329, 1565 |
| SspI | AATATT | 1 cut(s) | 1024 |
| SspMI | CTAG | 1 cut(s) | 782 |
| TaaI | ACNGT | 4 cut(s) | 263, 488, 1298, 1448 |
| TaiI | ACGT | 4 cut(s) | 472, 802, 1000, 1189 |
| TaqI | TCGA | 6 cut(s) | 59, 448, 593, 705, 776, 966 |
| TasI | AATT | 6 cut(s) | 970, 1077, 1168, 1219, 1509, 1603 |
| TatI | WGTACW | 2 cut(s) | 401, 1348 |
| TfiI | GAWTC | 1 cut(s) | 875 |
| Tru1I | TTAA | 3 cut(s) | 150, 1092, 1602 |
| Tru9I | TTAA | 3 cut(s) | 150, 1092, 1602 |
| TscAI | CASTG | 3 cut(s) | 266, 532, 1012 |
| TseFI | GTSAC | 2 cut(s) | 190, 1160 |
| TseI | GCWGC | 1 cut(s) | 1587 |
| Tsp45I | GTSAC | 2 cut(s) | 190, 1160 |
| TspGWI | ACGGA | 2 cut(s) | 402, 1520 |
| TspRI | CASTG | 3 cut(s) | 266, 532, 1012 |
| XapI | RAATTY | 1 cut(s) | 970 |
| XceI | RCATGY | 5 cut(s) | 390, 563, 813, 993, 1236 |
| XspI | CTAG | 1 cut(s) | 782 |
| Zsp2I | ATGCAT | 3 cut(s) | 149, 388, 1090 |