Rorug04G0106000

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000226
Physical Location & Seq
Forward (+)
16402902 .. 16406106
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0106000.1

Sequence Viewer

Length: 2073 bp
ATGGCGAGCAGGTCCCGAAAAGACGGAAGTGGGTTCTTAACGGGTACAAACAGTACTGGGCTTACTGATACTATTAGTAGTGAGCGTATCCAGTTTACTGATTCGTTGACCAACGAAGAAATCGAGAAACTCATCAATGGAAAGCATTCTCCGGAGGACAACACTGACTTTGCTGTTGATGTCCTTTTAACGATCACTGAGACCATCATTGATCATGCAACCCGTGATTCGTTGGTCAGTGATATTCTGAAGGATGCCAATGCCCCATATGAGAAGGTCCCCAGCATCAACGACAGCTTCATCTCGCCATTGTGCATTCTTAAGTCCATTTGCTGCGAGATCTCATCATGTAAGGATAGGGCTCGTTCTGGTGAAGAAATTTCCACCCAAATAAGGAGGGCAGTGATATTTGACAAGCTAAAACCCTATCCATGGGAGGCTAAGGCAGTGCTGGCCCTAGCGGCTTTCGCTTTGGAATATGGAGACTTCTGGCACCTCGCCCAGCTCTATGGTCAATGTAACCAACTTACCGATTCAGTGACTACACTGAAGCGAGTACCCGACGTTAAAGCGCCCTTGAAGAAACGCGAGGGGGAAGTACTTGAGCTGAATCGTCTCATCAAGGATACTTTGGAAGTGACTCGTTTGATCTGTAAGGTTGAGGCTCTTTATATTCACAATCGTACAGAGGATGCACCAACGTTGTACGCTGCAGTAGAATGTATCCCGATCTGTGTCTTTTGGACAATCACAGCAATTGTAGCTTGCGCGGCTAAGGTCACCGATCTCACTAGTGATGAGGAGATGCCACACGATCTACCCGATGTTGTTCCAAAAATCGAGCGCATACGGGAGAAACTTAACAAACTGCATGGAACATGCGTAAAAGAAATAGATCTGGCAAAGAGCTGCAAGAGGCTGCACAGGAAAATGGTGGACGCCCAACGCACTCTTAAGATTACGGAGGTTATTAACACCCTGATTCTTTTCACGGATAACGGGAAGCTACCTGTCATTAGTGTGGGTAGCAACGAGGAGGTTAAGTCTGAAACATTTGCCGACTTGGTAAAGGAAAACTCTGTGTTGTTTTACATTTCGAGCTTGGAGAACATTACGGACGATGACATTTCCGATCTGATACAAGTTTATGATGAAATTCAAAAAAATAATAGAAAATGGTGGATGGTGTGGATCCCCATTGTGGAAGACTGGACGAAAAACCAGAATGAGAAGTTTGAGAAATGGGGATCGAAGATGCCATGGTACAAGGTGCGGTTTCTTTCTTCAATAGTCATCAAGTACCTCGAGCAGGAATGGTCCTACACGGGTATTGCAATGTCCATGGTGATGGACCCACGAGGGCAGAGGCAATTCCACAATGCACTCGACTTGATCCGGAGACATAAAAACAAATTCTTTGATATCCTTGACCTGAACGTTTCAGTCATCGAGTCTATATTTGGGAATATGAAGAATAAAAAGCTAGAAGAGTGGAGCAAAGATGACACTAAGTGCATTTTCTTATACGGAGACATGGATGAGTCGTGGATTAACGAGTTGAAAAAGAAAGTGGAGGAAGCAAAGGATACCATCAAAGATTTCGGTATGTCGATTGAGTTACATAGAGTGGAGGGAAACGAAGCAAAAGCACTTTGGTCGGGGATAGGGAGCTTGTTGACTGATTACTTAGGTCAAGTGGAGTACAAGACCGTGAAAAAGGAACTCTGCCAGCTACTGTCCGACAAAAATCATGGGGAATGGGTTATAGTTAGCCAAGGGTATGATCTTATAACCAGTGGTCATCCTGCCACAATTTGTGATGTCCTAAAAATTATGTCACAGTGGAAGCAAGATGAGTCGAAGACATCACGTAAAACATCCACATTCGGAAATTATTTCCAAGAAGACCATAAGACCATAACTCAAACTAGTGATCACAACTACTGCTGCGAATTTAGCATTTCCGGGAATCCCCCCAAGAACTTGGACTGCCCAGTCTGCGGCCGTTCCATGAAAACCACCCCTATCATCAGGTACAAGTGCTGCCACGGTGCCACCGAAACTAGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

690

Amino Acids

78.73

Weight (kDa)

5.72

Isoelectric Point (pI)

37.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 38 - 304 3.8e-49 Sieve element occlusion N-terminus
SEO_C PF14577 565 - 683 3.7e-09 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1790
AasI GACNNNNNNGTC 1 cut(s) 1994
AccB1I GGYRCC 2 cut(s) 492, 2051
AccII CGCG 2 cut(s) 588, 770
AccIII TCCGGA 2 cut(s) 151, 1395
AciI CCGC 4 cut(s) 461, 770, 1273, 2001
AclI AACGTT 2 cut(s) 701, 1437
AclWI GGATC 4 cut(s) 1186, 1199, 1255, 1387
AcoI YGGCCR 1 cut(s) 2002
AcsI RAATTY 4 cut(s) 378, 1155, 1412, 1952
AcuI CTGAAG 2 cut(s) 269, 569
AcyI GRCGYC 1 cut(s) 939
AdeI CACNNNGTG 1 cut(s) 1512
AfiI CCNNNNNNNGG 5 cut(s) 393, 432, 1201, 1309, 2000
AflII CTTAAG 2 cut(s) 320, 953
AgsI TTSAA 4 cut(s) 580, 1160, 1287, 1561
AhlI ACTAGT 3 cut(s) 791, 1928, 2063
Alw26I GTCTC 5 cut(s) 194, 477, 620, 1393, 1524
AlwI GGATC 4 cut(s) 1186, 1199, 1255, 1387
AlwNI CAGNNNCTG 1 cut(s) 1735
Ama87I CYCGRG 1 cut(s) 1304
Aor13HI TCCGGA 2 cut(s) 151, 1395
AoxI GGCC 2 cut(s) 453, 2002
ApeKI GCWGC 6 cut(s) 333, 710, 909, 919, 1947, 2043
ApoI RAATTY 4 cut(s) 378, 1155, 1412, 1952
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 3 cut(s) 574, 770, 846
AspS9I GGNCC 5 cut(s) 12, 277, 454, 1317, 1351
AsuC2I CCSGG 1 cut(s) 1966
AsuHPI GGTGA 3 cut(s) 383, 772, 1357
AvaI CYCGRG 1 cut(s) 1304
AvaII GGWCC 4 cut(s) 12, 277, 1317, 1351
BamHI GGATCC 1 cut(s) 1191
BanI GGYRCC 2 cut(s) 492, 2051
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 1 cut(s) 1356
BbsI GAAGAC 3 cut(s) 1212, 1868, 1911
BbvI GCAGC 6 cut(s) 320, 697, 896, 906, 1934, 2030
BccI CCATC 4 cut(s) 212, 1177, 1342, 1598
BceAI ACGGC 1 cut(s) 1989
BcgI CGANNNNNNTGC 2 cut(s) 1638, 1672
BciVI GTATCC 4 cut(s) 98, 619, 734, 1579
BclI TGATCA 2 cut(s) 211, 1933
BcnI CCSGG 1 cut(s) 1966
BcoDI GTCTC 5 cut(s) 194, 477, 620, 1393, 1524
BcuI ACTAGT 3 cut(s) 791, 1928, 2063
BfaI CTAG 5 cut(s) 458, 792, 1484, 1929, 2064
BfmI CTRYAG 1 cut(s) 711
BfoI RGCGCY 1 cut(s) 575
BfrI CTTAAG 2 cut(s) 320, 953
BfuI GTATCC 4 cut(s) 98, 619, 734, 1579
BglI GCCNNNNNGGC 1 cut(s) 461
BglII AGATCT 2 cut(s) 339, 895
BisI GCNGC 9 cut(s) 334, 462, 711, 771, 910, 920, 1948, 2002, 2044
BlsI GCNGC 9 cut(s) 335, 463, 712, 772, 911, 921, 1949, 2003, 2045
BmcAI AGTACT 2 cut(s) 55, 600
Bme1390I CCNGG 1 cut(s) 1966
Bme18I GGWCC 4 cut(s) 12, 277, 1317, 1351
BmeT110I CYCGRG 1 cut(s) 1304
BmgT120I GGNCC 5 cut(s) 12, 277, 454, 1317, 1351
BmiI GGNNCC 6 cut(s) 14, 279, 494, 1193, 1353, 2053
BmrFI CCNGG 1 cut(s) 1966
BmrI ACTGGG 2 cut(s) 66, 1988
BmsI GCATC 5 cut(s) 244, 294, 682, 795, 1245
BmuI ACTGGG 2 cut(s) 66, 1988
BpiI GAAGAC 3 cut(s) 1212, 1868, 1911
Bpu10I CCTNAGC 2 cut(s) 441, 774
BpuEI CTTGAG 1 cut(s) 623
BpuMI CCSGG 1 cut(s) 1966
BsaAI YACGTR 1 cut(s) 1871
BsaHI GRCGYC 1 cut(s) 939
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 5 cut(s) 431, 1259, 1341, 1774, 2047
BsaWI WCCGGW 2 cut(s) 151, 1395
BsaXI ACNNNNNCTCC 2 cut(s) 1028, 1058
Bsc4I CCNNNNNNNGG 5 cut(s) 393, 432, 1201, 1309, 2000
Bse1I ACTGG 5 cut(s) 61, 91, 1214, 1794, 1994
Bse3DI GCAATG 1 cut(s) 1341
BseAI TCCGGA 2 cut(s) 151, 1395
BseDI CCNNGG 5 cut(s) 431, 1259, 1341, 1774, 2047
BseGI GGATG 6 cut(s) 259, 697, 1188, 1543, 1801, 1877
BseLI CCNNNNNNNGG 5 cut(s) 393, 432, 1201, 1309, 2000
BseMI GCAATG 1 cut(s) 1341
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 5 cut(s) 61, 91, 1214, 1794, 1994
BseRI GAGGAG 2 cut(s) 815, 1049
BseX3I CGGCCG 1 cut(s) 2002
BseXI GCAGC 6 cut(s) 320, 697, 896, 906, 1934, 2030
BseYI CCCAGC 2 cut(s) 281, 501
BsgI GTGCAG 1 cut(s) 905
Bsh1236I CGCG 2 cut(s) 588, 770
Bsh1285I CGRYCG 1 cut(s) 2005
BshFI GGCC 2 cut(s) 455, 2004
BshNI GGYRCC 2 cut(s) 492, 2051
BsiEI CGRYCG 1 cut(s) 2005
BsiHKCI CYCGRG 1 cut(s) 1304
BsiSI CCGG 3 cut(s) 152, 1396, 1965
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 5 cut(s) 393, 432, 1201, 1309, 2000
BsmAI GTCTC 5 cut(s) 194, 477, 620, 1393, 1524
BsmBI CGTCTC 1 cut(s) 620
BsmFI GGGAC 1 cut(s) 263
BsmI GAATGC 2 cut(s) 145, 315
BsnI GGCC 2 cut(s) 455, 2004
Bso31I GGTCTC 1 cut(s) 194
BsoBI CYCGRG 1 cut(s) 1304
Bsp1286I GDGCHC 1 cut(s) 364
Bsp13I TCCGGA 2 cut(s) 151, 1395
Bsp19I CCATGG 3 cut(s) 431, 1259, 1341
BspACI CCGC 4 cut(s) 461, 770, 1273, 2001
BspANI GGCC 2 cut(s) 455, 2004
BspCNI CTCAG 1 cut(s) 190
BspEI TCCGGA 2 cut(s) 151, 1395
BspFNI CGCG 2 cut(s) 588, 770
BspLI GGNNCC 6 cut(s) 14, 279, 494, 1193, 1353, 2053
BspMAI CTGCAG 1 cut(s) 715
BspPI GGATC 4 cut(s) 1186, 1199, 1255, 1387
BspT107I GGYRCC 2 cut(s) 492, 2051
BspTI CTTAAG 2 cut(s) 320, 953
BspTNI GGTCTC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 1341
BsrI ACTGG 5 cut(s) 61, 91, 1214, 1794, 1994
BssECI CCNNGG 5 cut(s) 431, 1259, 1341, 1774, 2047
BssNI GRCGYC 1 cut(s) 939
BssSI CACGAG 1 cut(s) 1356
BssT1I CCWWGG 4 cut(s) 431, 1259, 1341, 1774
Bst2BI CACGAG 1 cut(s) 1356
Bst4CI ACNGT 5 cut(s) 53, 1711, 1737, 1842, 2051
Bst6I CTCTTC 1 cut(s) 1482
BstACI GRCGYC 1 cut(s) 939
BstAFI CTTAAG 2 cut(s) 320, 953
BstBAI YACGTR 1 cut(s) 1871
BstC8I GCNNGC 4 cut(s) 7, 453, 766, 1730
BstDEI CTNAG 5 cut(s) 198, 441, 774, 1509, 1687
BstDSI CCRYGG 4 cut(s) 431, 1259, 1341, 2047
BstEII GGTNACC 1 cut(s) 778
BstENI CCTNNNNNAGG 1 cut(s) 1307
BstF5I GGATG 6 cut(s) 259, 697, 1188, 1543, 1801, 1877
BstFNI CGCG 2 cut(s) 588, 770
BstH2I RGCGCY 1 cut(s) 575
BstHHI GCGC 3 cut(s) 574, 770, 846
BstMAI GTCTC 5 cut(s) 194, 477, 620, 1393, 1524
BstMCI CGRYCG 1 cut(s) 2005
BstMWI GCNNNNNNNGC 7 cut(s) 452, 461, 467, 761, 770, 1956, 1998
BstNSI RCATGY 1 cut(s) 882
BstPI GGTNACC 1 cut(s) 778
BstSCI CCNGG 1 cut(s) 1964
BstSFI CTRYAG 1 cut(s) 711
BstUI CGCG 2 cut(s) 588, 770
BstV1I GCAGC 6 cut(s) 320, 697, 896, 906, 1934, 2030
BstV2I GAAGAC 3 cut(s) 1212, 1868, 1911
BstX2I RGATCY 3 cut(s) 339, 895, 1191
BstXI CCANNNNNNTGG 3 cut(s) 509, 1348, 1984
BstYI RGATCY 3 cut(s) 339, 895, 1191
BstZI CGGCCG 1 cut(s) 2002
BsuI GTATCC 4 cut(s) 98, 619, 734, 1579
BsuRI GGCC 2 cut(s) 455, 2004
BtgI CCRYGG 4 cut(s) 431, 1259, 1341, 2047
BtsCI GGATG 6 cut(s) 259, 697, 1188, 1543, 1801, 1877
BtsI GCAGTG 2 cut(s) 408, 453
BtsIMutI CAGTG 9 cut(s) 162, 195, 244, 408, 453, 543, 545, 1801, 1847
Cac8I GCNNGC 4 cut(s) 7, 453, 766, 1730
CaiI CAGNNNCTG 1 cut(s) 1735
CfoI GCGC 3 cut(s) 574, 770, 846
Cfr13I GGNCC 5 cut(s) 12, 277, 454, 1317, 1351
CseI GACGC 1 cut(s) 947
DdeI CTNAG 5 cut(s) 198, 441, 774, 1509, 1687
DraIII CACNNNGTG 1 cut(s) 1512
DrdI GACNNNNNNGTC 1 cut(s) 1994
DseDI GACNNNNNNGTC 1 cut(s) 1994
EaeI YGGCCR 1 cut(s) 2002
EagI CGGCCG 1 cut(s) 2002
Eam1104I CTCTTC 1 cut(s) 1482
EarI CTCTTC 1 cut(s) 1482
EclXI CGGCCG 1 cut(s) 2002
Eco130I CCWWGG 4 cut(s) 431, 1259, 1341, 1774
Eco24I GRGCYC 1 cut(s) 364
Eco31I GGTCTC 1 cut(s) 194
Eco32I GATATC 1 cut(s) 1423
Eco47I GGWCC 4 cut(s) 12, 277, 1317, 1351
Eco52I CGGCCG 1 cut(s) 2002
Eco57I CTGAAG 2 cut(s) 269, 569
Eco88I CYCGRG 1 cut(s) 1304
Eco91I GGTNACC 1 cut(s) 778
EcoNI CCTNNNNNAGG 1 cut(s) 1307
EcoO109I RGGNCCY 2 cut(s) 12, 277
EcoO65I GGTNACC 1 cut(s) 778
EcoRV GATATC 1 cut(s) 1423
EcoT14I CCWWGG 4 cut(s) 431, 1259, 1341, 1774
EcoT38I GRGCYC 1 cut(s) 364
ErhI CCWWGG 4 cut(s) 431, 1259, 1341, 1774
Esp3I CGTCTC 1 cut(s) 620
FaqI GGGAC 1 cut(s) 263
FauNDI CATATG 1 cut(s) 268
FbaI TGATCA 2 cut(s) 211, 1933
Fnu4HI GCNGC 9 cut(s) 334, 462, 711, 771, 910, 920, 1948, 2002, 2044
FokI GGATG 6 cut(s) 266, 704, 1195, 1550, 1788, 1864
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 9 cut(s) 334, 462, 711, 771, 910, 920, 1948, 2002, 2044
FspBI CTAG 5 cut(s) 458, 792, 1484, 1929, 2064
GlaI GCGC 3 cut(s) 573, 769, 845
GluI GCNGC 9 cut(s) 334, 462, 711, 771, 910, 920, 1948, 2002, 2044
GsaI CCCAGC 2 cut(s) 285, 505
HaeII RGCGCY 1 cut(s) 575
HaeIII GGCC 2 cut(s) 455, 2004
HapII CCGG 3 cut(s) 152, 1396, 1965
HgaI GACGC 1 cut(s) 947
HhaI GCGC 3 cut(s) 574, 770, 846
Hin1I GRCGYC 1 cut(s) 939
Hin6I GCGC 3 cut(s) 572, 768, 844
HinP1I GCGC 3 cut(s) 572, 768, 844
HincII GTYRAC 2 cut(s) 108, 1677
HindII GTYRAC 2 cut(s) 108, 1677
HpaII CCGG 3 cut(s) 152, 1396, 1965
HphI GGTGA 3 cut(s) 383, 772, 1357
Hpy166II GTNNAC 4 cut(s) 96, 108, 937, 1677
Hpy188I TCNGA 6 cut(s) 249, 1048, 1132, 1137, 1741, 1889
Hpy188III TCNNGA 5 cut(s) 15, 124, 152, 727, 1396
Hpy8I GTNNAC 4 cut(s) 96, 108, 937, 1677
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 2 cut(s) 244, 268
HpyCH4III ACNGT 5 cut(s) 53, 1711, 1737, 1842, 2051
HpyCH4IV ACGT 4 cut(s) 564, 701, 1437, 1870
HpyF10VI GCNNNNNNNGC 7 cut(s) 452, 461, 467, 761, 770, 1956, 1998
HpyF3I CTNAG 5 cut(s) 198, 441, 774, 1509, 1687
HpySE526I ACGT 4 cut(s) 564, 701, 1437, 1870
Hsp92I GRCGYC 1 cut(s) 939
HspAI GCGC 3 cut(s) 572, 768, 844
Kpn2I TCCGGA 2 cut(s) 151, 1395
Ksp22I TGATCA 2 cut(s) 211, 1933
LmnI GCTCC 2 cut(s) 1494, 1668
Lsp1109I GCAGC 6 cut(s) 320, 697, 896, 906, 1934, 2030
LweI GCATC 5 cut(s) 244, 294, 682, 795, 1245
MaeI CTAG 5 cut(s) 458, 792, 1484, 1929, 2064
MaeII ACGT 4 cut(s) 564, 701, 1437, 1870
MaeIII GTNAC 6 cut(s) 518, 538, 637, 778, 1617, 1836
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 3 cut(s) 339, 895, 1191
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 9 cut(s) 378, 756, 1155, 1370, 1412, 1812, 1830, 1891, 1952
MlyI GAGTC 4 cut(s) 634, 1460, 1550, 1865
MmeI TCCRAC 1 cut(s) 1764
MroI TCCGGA 2 cut(s) 151, 1395
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 9 cut(s) 38, 188, 321, 567, 861, 954, 972, 1041, 1551
MslI CAYNNNNRTG 2 cut(s) 1019, 1346
MspCI CTTAAG 2 cut(s) 320, 953
MspI CCGG 3 cut(s) 152, 1396, 1965
MspR9I CCNGG 1 cut(s) 1966
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 2 cut(s) 145, 315
MvnI CGCG 2 cut(s) 588, 770
MwoI GCNNNNNNNGC 7 cut(s) 452, 461, 467, 761, 770, 1956, 1998
NciI CCSGG 1 cut(s) 1966
NcoI CCATGG 3 cut(s) 431, 1259, 1341
NdeI CATATG 1 cut(s) 268
NlaIV GGNNCC 6 cut(s) 14, 279, 494, 1193, 1353, 2053
NmuCI GTSAC 4 cut(s) 538, 637, 778, 1836
NspI RCATGY 1 cut(s) 882
PaeR7I CTCGAG 1 cut(s) 1304
PcsI WCGNNNNNNNCGW 3 cut(s) 120, 819, 2055
PctI GAATGC 2 cut(s) 145, 315
PdmI GAANNNNTTC 1 cut(s) 145
PfeI GAWTC 6 cut(s) 101, 227, 533, 610, 982, 1969
PfoI TCCNGGA 1 cut(s) 1964
PkrI GCNGC 9 cut(s) 335, 463, 712, 772, 911, 921, 1949, 2003, 2045
PleI GAGTC 4 cut(s) 634, 1459, 1549, 1864
PpsI GAGTC 4 cut(s) 634, 1459, 1549, 1864
Ppu21I YACGTR 1 cut(s) 1871
PpuMI RGGWCCY 2 cut(s) 12, 277
PsiI TTATAA 1 cut(s) 1790
Psp1406I AACGTT 2 cut(s) 701, 1437
Psp5II RGGWCCY 2 cut(s) 12, 277
PspEI GGTNACC 1 cut(s) 778
PspFI CCCAGC 2 cut(s) 281, 501
PspN4I GGNNCC 6 cut(s) 14, 279, 494, 1193, 1353, 2053
PspPI GGNCC 5 cut(s) 12, 277, 454, 1317, 1351
PspPPI RGGWCCY 2 cut(s) 12, 277
PspXI VCTCGAGB 1 cut(s) 1304
PstI CTGCAG 1 cut(s) 715
PstNI CAGNNNCTG 1 cut(s) 1735
PsuI RGATCY 3 cut(s) 339, 895, 1191
RseI CAYNNNNRTG 2 cut(s) 1019, 1346
SaqAI TTAA 9 cut(s) 38, 188, 321, 567, 861, 954, 972, 1041, 1551
SatI GCNGC 9 cut(s) 334, 462, 711, 771, 910, 920, 1948, 2002, 2044
Sau96I GGNCC 5 cut(s) 12, 277, 454, 1317, 1351
ScaI AGTACT 2 cut(s) 55, 600
SchI GAGTC 4 cut(s) 634, 1460, 1550, 1865
ScrFI CCNGG 1 cut(s) 1966
SduI GDGCHC 1 cut(s) 364
SfaNI GCATC 5 cut(s) 244, 294, 682, 795, 1245
SfcI CTRYAG 1 cut(s) 711
Sfr274I CTCGAG 1 cut(s) 1304
SinI GGWCC 4 cut(s) 12, 277, 1317, 1351
SlaI CTCGAG 1 cut(s) 1304
SmiMI CAYNNNNRTG 2 cut(s) 1019, 1346
SmlI CTYRAG 4 cut(s) 320, 602, 953, 1304
SmoI CTYRAG 4 cut(s) 320, 602, 953, 1304
SpeI ACTAGT 3 cut(s) 791, 1928, 2063
Sse9I AATT 9 cut(s) 378, 756, 1155, 1370, 1412, 1812, 1830, 1891, 1952
SsiI CCGC 4 cut(s) 461, 770, 1273, 2001
SspMI CTAG 5 cut(s) 458, 792, 1484, 1929, 2064
StyD4I CCNGG 1 cut(s) 1964
StyI CCWWGG 4 cut(s) 431, 1259, 1341, 1774
TaaI ACNGT 5 cut(s) 53, 1711, 1737, 1842, 2051
TaiI ACGT 4 cut(s) 567, 704, 1440, 1873
TaqI TCGA 9 cut(s) 123, 840, 1097, 1250, 1305, 1386, 1449, 1610, 1859
TasI AATT 9 cut(s) 378, 756, 1155, 1370, 1412, 1812, 1830, 1891, 1952
TatI WGTACW 3 cut(s) 53, 598, 1701
TauI GCSGC 3 cut(s) 464, 773, 2004
TfiI GAWTC 6 cut(s) 101, 227, 533, 610, 982, 1969
Tru1I TTAA 9 cut(s) 38, 188, 321, 567, 861, 954, 972, 1041, 1551
Tru9I TTAA 9 cut(s) 38, 188, 321, 567, 861, 954, 972, 1041, 1551
TscAI CASTG 9 cut(s) 169, 202, 244, 408, 453, 543, 552, 1801, 1847
TseFI GTSAC 4 cut(s) 538, 637, 778, 1836
TseI GCWGC 6 cut(s) 333, 710, 909, 919, 1947, 2043
Tsp45I GTSAC 4 cut(s) 538, 637, 778, 1836
TspDTI ATGAA 4 cut(s) 289, 1167, 1484, 2027
TspGWI ACGGA 5 cut(s) 39, 977, 1007, 1130, 1542
TspRI CASTG 9 cut(s) 169, 202, 244, 408, 453, 543, 552, 1801, 1847
Vha464I CTTAAG 2 cut(s) 320, 953
VpaK11BI GGWCC 4 cut(s) 12, 277, 1317, 1351
XagI CCTNNNNNAGG 1 cut(s) 1307
XapI RAATTY 4 cut(s) 378, 1155, 1412, 1952
XceI RCATGY 1 cut(s) 882
XhoI CTCGAG 1 cut(s) 1304
XmnI GAANNNNTTC 1 cut(s) 145
XspI CTAG 5 cut(s) 458, 792, 1484, 1929, 2064
ZrmI AGTACT 2 cut(s) 55, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.