Rh1BG272000

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000226
Physical Location & Seq
Forward (+)
40768683 .. 40770620
1938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG272000.1

Sequence Viewer

Length: 1938 bp
ATGGATGATCAGCTTAAACACTTGAGTCATGAGCATCCCTTGATGTTCAAGGAAGAGGCGCCACCGAAACATGAAGCATCAGGTCAACCAGTTTTATGCTCTGCATGTGGGGAGCCAGTGCTTGGTTCTAACTACAGTTGCAATCAATGTTCCAACGAGTTCATTCTCCACAAGCCATGCGCGCAGCTAGGAAGAGAGATCCAGCACTGGATGCACAAACACTCACTTACTATTCTCACAAGAAATTCCAGACGATACCGCAATTATATTTGTGATATGTGTGGCGCACTATCCTATGGCGACTCTTACTCTTGCTTCGAGTGTGAATTTGATCTTGACTTCAAATGTGCTGCCAACATAGATTGTATAAAACATTTCAGTCACATGCATATATTGAAGTTTATTGAAAAGCCACCCGAGGGTGGTTCACCACTTTTTTGTATTGGGTGTTTAGAGCCAGTGCTTGGTCCTAGTTACACTTGCAAAGTGAGTTTGGGGATGGAAAGGAATAGAAGCTGCTCCCAGCTTTCTCTGCATAAATCATGTGCAGAGTTACCTCTTAAGATCCAGCATCCAATGCACCACCAACATTCGCTTACTCTCGACCTAAATGGAACAAGAGAATACCATTGTATTGCATGTGACCAAGATTGCAGTCGCAAATTCACTTACAGTTGTTTCAAATGTGACTTCAACCTAGACCTCAAATGTGCTTCCGAGGAAGGCATCAAACATTTCAGTCACAACCATCCATTAATATTCAAGAAGCAAGGAAACAAAAAAAGAGAGTCCGATCCATTAGTTATTTGCGATGGGTGCCAGGTTCCAGTATTTGGCCCTAGTTACACTTGCATCAATACACATGGCCGTCGCAGATGCAGCTTCAATCTCCACAAGTCATGTGCAGAGTTACCCGTTGAGATCCAGCACCCAGTGCACCGTCAACATCCACTTTTTCTGCTCAATATAATTGAGAATATCAAAGTTCGTTGCTTTTGTAATGCTTGCAATCAACTTTGCAGATACCGCTACAGCTGTTCCATTTGCGATTTCAACCTTGACCTCAAATGTGCCTCCAATTGGCAAAATATTATTGAGAATGACTCTCACGAACATCAGTTCATTGTACCCCGGAAGGAAATGGCCGAGCTCCAGCTTAATTGCGACGTTTGTGGGGAGTACTGGAGGGGCATCATCTTCTACATGTGTAGCATCTGCCAACTCTTGGTCCATGAGGAATGCGCTTCATTTCCACGCTACACCAAGATACCCGGGCACCAACACCGCCTCAAGCTAACCTGGTTCCTTGAAGACATTTACCCCAAGGACCAGGTTTGTAAAATCTGCTCTACAAATATTGGCAAGTGTCCTACTGTATATTATTGTCAGGAATGTTGCGGATATGTTGCCCACACTACATGCATATTCCAGAAAGAAGAAAACCAAGGCAGAACCGTTAATATTAAAGATGAGGATTATGACTCTGATGATGTTGGGGTGATCGAACACTTCAGTCATCAACATCTTTTACTCCTTAATGATCGTCGTCAGGAGGTTAACGACGACAGAATAATTACTTGTGAGGGTTGCATTCGACCCATCACTAATGATTTTTACAGCTGTATTGAAGAAGAAGAAGAAGAAGAAGAGTCTTGCCATTTCTATCTCCACAAAACATGTGCTCGATTACCAGAAAAGATGCTTCTCCCTTTGCTTCACCCACACCAGTTCATACTCCTCTCCCGGGCTCCTTCTATTGATGGCGTGTTTCAGTGTTATATGTGTGGTATCTTTCACCAAGGATTTGTATACAATTGTGATAAGTGTGCTTTGCGAACTGGCGAAAACCTCTTAACCTTGACCTTGAGTGCAGTATTTATTGGGAGAATAGGGATCTTAAACATGAGTCTCATGCTCACCGCCTCATCCTCGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

645

Amino Acids

74.26

Weight (kDa)

6.31

Isoelectric Point (pI)

56.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 9 - 61 4.5e-09 C1 domain
C1_2 PF03107 72 - 117 4.8e-08 C1 domain
C1_2 PF03107 194 - 238 9.6e-08 C1 domain
C1_2 PF03107 312 - 358 5.1e-07 C1 domain
C1_2 PF03107 369 - 415 3.1e-07 C1 domain
C1_2 PF03107 425 - 475 1.1e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 58, 816, 1275
AccB7I CCANNNNNTGG 4 cut(s) 122, 464, 833, 1225
AccI GTMKAC 1 cut(s) 1809
AccII CGCG 1 cut(s) 182
AciI CCGC 5 cut(s) 259, 1027, 1285, 1398, 1920
AclWI GGATC 5 cut(s) 193, 559, 788, 916, 1901
AcoI YGGCCR 2 cut(s) 865, 1143
AcsI RAATTY 3 cut(s) 244, 326, 662
AcuI CTGAAG 1 cut(s) 1495
AcyI GRCGYC 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 934
AfaI GTAC 2 cut(s) 1128, 1181
AfiI CCNNNNNNNGG 8 cut(s) 122, 419, 422, 464, 833, 1080, 1225, 1744
AflII CTTAAG 1 cut(s) 560
AflIII ACRYGT 2 cut(s) 1203, 1676
AjnI CCWGG 3 cut(s) 819, 1298, 1329
Alw21I GWGCWC 3 cut(s) 939, 1152, 1684
Alw26I GTCTC 1 cut(s) 1913
Alw44I GTGCAC 1 cut(s) 935
AlwI GGATC 5 cut(s) 193, 559, 788, 916, 1901
Ama87I CYCGRG 3 cut(s) 416, 1271, 1743
AoxI GGCC 3 cut(s) 835, 865, 1143
ApaLI GTGCAC 1 cut(s) 935
ApeKI GCWGC 4 cut(s) 184, 350, 516, 879
ApoI RAATTY 3 cut(s) 244, 326, 662
AseI ATTAAT 1 cut(s) 755
AspLEI GCGC 5 cut(s) 61, 182, 184, 287, 1244
AspS9I GGNCC 4 cut(s) 467, 836, 1228, 1327
AsuC2I CCSGG 5 cut(s) 1132, 1272, 1273, 1744, 1745
AsuHPI GGTGA 5 cut(s) 420, 1510, 1709, 1787, 1909
AvaI CYCGRG 3 cut(s) 416, 1271, 1743
AvaII GGWCC 3 cut(s) 467, 1228, 1327
BaeGI GKGCMC 2 cut(s) 939, 1278
BanI GGYRCC 3 cut(s) 58, 816, 1275
BanII GRGCYC 2 cut(s) 1152, 1750
BbsI GAAGAC 1 cut(s) 1317
Bbv12I GWGCWC 3 cut(s) 939, 1152, 1684
BbvI GCAGC 4 cut(s) 196, 337, 503, 891
BccI CCATC 5 cut(s) 493, 756, 806, 1607, 1754
BceAI ACGGC 1 cut(s) 852
BciT130I CCWGG 3 cut(s) 821, 1300, 1331
BclI TGATCA 1 cut(s) 7
BcnI CCSGG 5 cut(s) 1132, 1272, 1273, 1744, 1745
BcoDI GTCTC 1 cut(s) 1913
BfaI CTAG 4 cut(s) 188, 471, 698, 840
BfmI CTRYAG 2 cut(s) 133, 1030
BfoI RGCGCY 1 cut(s) 62
BfrI CTTAAG 1 cut(s) 560
BisI GCNGC 4 cut(s) 185, 351, 517, 880
BlsI GCNGC 4 cut(s) 186, 352, 518, 881
BmcAI AGTACT 1 cut(s) 1181
Bme1390I CCNGG 8 cut(s) 821, 1132, 1272, 1273, 1300, 1331, 1744, 1745
Bme18I GGWCC 3 cut(s) 467, 1228, 1327
BmeT110I CYCGRG 3 cut(s) 416, 1271, 1743
BmgT120I GGNCC 4 cut(s) 467, 836, 1228, 1327
BmiI GGNNCC 7 cut(s) 60, 114, 818, 825, 1277, 1304, 1749
BmrFI CCNGG 8 cut(s) 821, 1132, 1272, 1273, 1300, 1331, 1744, 1745
BmrI ACTGGG 1 cut(s) 926
BmuI ACTGGG 1 cut(s) 926
BpiI GAAGAC 1 cut(s) 1317
BplI GAGNNNNNCTC 2 cut(s) 1088, 1120
BpmI CTGGAG 2 cut(s) 1136, 1204
BpuEI CTTGAG 3 cut(s) 43, 1274, 1885
BpuMI CCSGG 5 cut(s) 1132, 1272, 1273, 1744, 1745
BsaHI GRCGYC 1 cut(s) 59
BsaJI CCNNGG 8 cut(s) 417, 717, 1130, 1271, 1323, 1444, 1743, 1798
Bsc4I CCNNNNNNNGG 8 cut(s) 122, 419, 422, 464, 833, 1080, 1225, 1744
Bse1I ACTGG 9 cut(s) 89, 116, 212, 458, 827, 932, 1187, 1726, 1843
BseBI CCWGG 3 cut(s) 821, 1300, 1331
BseDI CCNNGG 8 cut(s) 417, 717, 1130, 1271, 1323, 1444, 1743, 1798
BseGI GGATG 8 cut(s) 10, 34, 216, 504, 571, 748, 946, 1925
BseLI CCNNNNNNNGG 8 cut(s) 122, 419, 422, 464, 833, 1080, 1225, 1744
BseNI ACTGG 9 cut(s) 89, 116, 212, 458, 827, 932, 1187, 1726, 1843
BsePI GCGCGC 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 1727
BseSI GKGCMC 2 cut(s) 939, 1278
BseXI GCAGC 4 cut(s) 196, 337, 503, 891
BseYI CCCAGC 1 cut(s) 522
BsgI GTGCAG 3 cut(s) 567, 924, 1890
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 3 cut(s) 837, 867, 1145
BshNI GGYRCC 3 cut(s) 58, 816, 1275
BsiHKAI GWGCWC 3 cut(s) 939, 1152, 1684
BsiHKCI CYCGRG 3 cut(s) 416, 1271, 1743
BsiSI CCGG 3 cut(s) 1132, 1272, 1744
BslI CCNNNNNNNGG 8 cut(s) 122, 419, 422, 464, 833, 1080, 1225, 1744
BsmAI GTCTC 1 cut(s) 1913
BsmI GAATGC 2 cut(s) 1244, 1590
BsnI GGCC 3 cut(s) 837, 867, 1145
BsoBI CYCGRG 3 cut(s) 416, 1271, 1743
Bsp1286I GDGCHC 5 cut(s) 939, 1152, 1278, 1684, 1750
Bsp143I GATC 9 cut(s) 7, 198, 331, 564, 793, 921, 1500, 1540, 1893
BspACI CCGC 5 cut(s) 259, 1027, 1285, 1398, 1920
BspANI GGCC 3 cut(s) 837, 867, 1145
BspFNI CGCG 1 cut(s) 182
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 7 cut(s) 60, 114, 818, 825, 1277, 1304, 1749
BspPI GGATC 5 cut(s) 193, 559, 788, 916, 1901
BspT107I GGYRCC 3 cut(s) 58, 816, 1275
BspTI CTTAAG 1 cut(s) 560
BsrI ACTGG 9 cut(s) 89, 116, 212, 458, 827, 932, 1187, 1726, 1843
BssECI CCNNGG 8 cut(s) 417, 717, 1130, 1271, 1323, 1444, 1743, 1798
BssHII GCGCGC 1 cut(s) 180
BssMI GATC 9 cut(s) 7, 198, 331, 564, 793, 921, 1500, 1540, 1893
BssNAI GTATAC 1 cut(s) 1810
BssNI GRCGYC 1 cut(s) 59
BssT1I CCWWGG 3 cut(s) 1323, 1444, 1798
Bst1107I GTATAC 1 cut(s) 1810
Bst2UI CCWGG 3 cut(s) 821, 1300, 1331
Bst4CI ACNGT 5 cut(s) 137, 674, 941, 1375, 1456
Bst6I CTCTTC 3 cut(s) 48, 187, 1641
BstACI GRCGYC 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 560
BstAPI GCANNNNNTGC 3 cut(s) 211, 577, 934
BstC8I GCNNGC 2 cut(s) 182, 1006
BstF5I GGATG 8 cut(s) 10, 34, 216, 504, 571, 748, 946, 1925
BstFNI CGCG 1 cut(s) 182
BstH2I RGCGCY 1 cut(s) 62
BstHHI GCGC 5 cut(s) 61, 182, 184, 287, 1244
BstKTI GATC 9 cut(s) 10, 201, 334, 567, 796, 924, 1503, 1543, 1896
BstMAI GTCTC 1 cut(s) 1913
BstMBI GATC 9 cut(s) 7, 198, 331, 564, 793, 921, 1500, 1540, 1893
BstMWI GCNNNNNNNGC 8 cut(s) 181, 211, 532, 577, 816, 879, 934, 1026
BstNI CCWGG 3 cut(s) 821, 1300, 1331
BstNSI RCATGY 6 cut(s) 108, 388, 642, 1207, 1422, 1680
BstSCI CCNGG 8 cut(s) 819, 1130, 1270, 1271, 1298, 1329, 1742, 1743
BstSFI CTRYAG 2 cut(s) 133, 1030
BstSLI GKGCMC 2 cut(s) 939, 1278
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 4 cut(s) 196, 337, 503, 891
BstV2I GAAGAC 1 cut(s) 1317
BstX2I RGATCY 4 cut(s) 198, 564, 921, 1893
BstYI RGATCY 4 cut(s) 198, 564, 921, 1893
BstZ17I GTATAC 1 cut(s) 1810
BsuRI GGCC 3 cut(s) 837, 867, 1145
BtgZI GCGATG 1 cut(s) 825
BtsCI GGATG 8 cut(s) 10, 34, 216, 504, 571, 748, 946, 1925
BtsIMutI CAGTG 5 cut(s) 123, 205, 465, 939, 1778
Cac8I GCNNGC 2 cut(s) 182, 1006
CciI TCATGA 1 cut(s) 28
CfoI GCGC 5 cut(s) 61, 182, 184, 287, 1244
Cfr13I GGNCC 4 cut(s) 467, 836, 1228, 1327
Cfr9I CCCGGG 2 cut(s) 1271, 1743
CsiI ACCWGGT 2 cut(s) 1298, 1329
Csp6I GTAC 2 cut(s) 1127, 1180
CviQI GTAC 2 cut(s) 1127, 1180
DinI GGCGCC 1 cut(s) 60
DpnI GATC 9 cut(s) 9, 200, 333, 566, 795, 923, 1502, 1542, 1895
DpnII GATC 9 cut(s) 7, 198, 331, 564, 793, 921, 1500, 1540, 1893
DraIII CACNNNGTG 1 cut(s) 934
EaeI YGGCCR 2 cut(s) 865, 1143
Eam1104I CTCTTC 3 cut(s) 48, 187, 1641
EarI CTCTTC 3 cut(s) 48, 187, 1641
Ecl136II GAGCTC 1 cut(s) 1150
Eco130I CCWWGG 3 cut(s) 1323, 1444, 1798
Eco24I GRGCYC 2 cut(s) 1152, 1750
Eco47I GGWCC 3 cut(s) 467, 1228, 1327
Eco53kI GAGCTC 1 cut(s) 1150
Eco57I CTGAAG 1 cut(s) 1495
Eco88I CYCGRG 3 cut(s) 416, 1271, 1743
EcoICRI GAGCTC 1 cut(s) 1150
EcoRII CCWGG 3 cut(s) 819, 1298, 1329
EcoT14I CCWWGG 3 cut(s) 1323, 1444, 1798
EcoT22I ATGCAT 2 cut(s) 390, 1424
EcoT38I GRGCYC 2 cut(s) 1152, 1750
EgeI GGCGCC 1 cut(s) 60
EheI GGCGCC 1 cut(s) 60
ErhI CCWWGG 3 cut(s) 1323, 1444, 1798
FbaI TGATCA 1 cut(s) 7
FblI GTMKAC 1 cut(s) 1809
Fnu4HI GCNGC 4 cut(s) 185, 351, 517, 880
FokI GGATG 8 cut(s) 17, 21, 223, 511, 558, 735, 933, 1912
FriOI GRGCYC 2 cut(s) 1152, 1750
Fsp4HI GCNGC 4 cut(s) 185, 351, 517, 880
FspBI CTAG 4 cut(s) 188, 471, 698, 840
GlaI GCGC 5 cut(s) 60, 181, 183, 286, 1243
GluI GCNGC 4 cut(s) 185, 351, 517, 880
GsaI CCCAGC 1 cut(s) 526
GsuI CTGGAG 2 cut(s) 1136, 1204
HaeII RGCGCY 1 cut(s) 62
HaeIII GGCC 3 cut(s) 837, 867, 1145
HapII CCGG 3 cut(s) 1132, 1272, 1744
HhaI GCGC 5 cut(s) 61, 182, 184, 287, 1244
Hin1I GRCGYC 1 cut(s) 59
Hin6I GCGC 5 cut(s) 59, 180, 182, 285, 1242
HinP1I GCGC 5 cut(s) 59, 180, 182, 285, 1242
HincII GTYRAC 3 cut(s) 86, 944, 1558
HindII GTYRAC 3 cut(s) 86, 944, 1558
HinfI GANTC 7 cut(s) 25, 302, 788, 1103, 1481, 1649, 1906
HpaI GTTAAC 1 cut(s) 1558
HpaII CCGG 3 cut(s) 1132, 1272, 1744
HphI GGTGA 5 cut(s) 420, 1510, 1709, 1787, 1909
Hpy166II GTNNAC 6 cut(s) 86, 428, 937, 944, 1558, 1810
Hpy188I TCNGA 3 cut(s) 718, 793, 1486
Hpy188III TCNNGA 9 cut(s) 29, 249, 335, 602, 763, 1109, 1388, 1429, 1550
Hpy8I GTNNAC 6 cut(s) 86, 428, 937, 944, 1558, 1810
Hpy99I CGWCG 4 cut(s) 873, 1169, 1548, 1565
HpyAV CCTTC 3 cut(s) 716, 1129, 1761
HpyCH4III ACNGT 5 cut(s) 137, 674, 941, 1375, 1456
HpyCH4IV ACGT 1 cut(s) 1167
HpyF10VI GCNNNNNNNGC 8 cut(s) 181, 211, 532, 577, 816, 879, 934, 1026
HpySE526I ACGT 1 cut(s) 1167
Hsp92I GRCGYC 1 cut(s) 59
HspAI GCGC 5 cut(s) 59, 180, 182, 285, 1242
KasI GGCGCC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 7
KspAI GTTAAC 1 cut(s) 1558
Kzo9I GATC 9 cut(s) 7, 198, 331, 564, 793, 921, 1500, 1540, 1893
LmnI GCTCC 4 cut(s) 112, 524, 1155, 1753
Lsp1109I GCAGC 4 cut(s) 196, 337, 503, 891
MabI ACCWGGT 2 cut(s) 1298, 1329
MaeI CTAG 4 cut(s) 188, 471, 698, 840
MaeII ACGT 1 cut(s) 1167
MaeIII GTNAC 8 cut(s) 380, 473, 552, 641, 686, 740, 842, 909
MalI GATC 9 cut(s) 9, 200, 333, 566, 795, 923, 1502, 1542, 1895
MboI GATC 9 cut(s) 7, 198, 331, 564, 793, 921, 1500, 1540, 1893
MfeI CAATTG 2 cut(s) 1078, 1813
MflI RGATCY 4 cut(s) 198, 564, 921, 1893
MhlI GDGCHC 5 cut(s) 939, 1152, 1278, 1684, 1750
MluCI AATT 9 cut(s) 244, 262, 326, 662, 969, 1078, 1159, 1572, 1813
Mly113I GGCGCC 1 cut(s) 59
MlyI GAGTC 7 cut(s) 34, 296, 797, 1097, 1475, 1658, 1915
MmeI TCCRAC 1 cut(s) 177
Mph1103I ATGCAT 2 cut(s) 390, 1424
MspA1I CMGCKG 2 cut(s) 1035, 1620
MspCI CTTAAG 1 cut(s) 560
MspI CCGG 3 cut(s) 1132, 1272, 1744
MspR9I CCNGG 8 cut(s) 821, 1132, 1272, 1273, 1300, 1331, 1744, 1745
MunI CAATTG 2 cut(s) 1078, 1813
Mva1269I GAATGC 2 cut(s) 1244, 1590
MvaI CCWGG 3 cut(s) 821, 1300, 1331
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 8 cut(s) 181, 211, 532, 577, 816, 879, 934, 1026
NarI GGCGCC 1 cut(s) 59
NciI CCSGG 5 cut(s) 1132, 1272, 1273, 1744, 1745
NdeII GATC 9 cut(s) 7, 198, 331, 564, 793, 921, 1500, 1540, 1893
NlaIV GGNNCC 7 cut(s) 60, 114, 818, 825, 1277, 1304, 1749
NmeAIII GCCGAG 1 cut(s) 1171
NmuCI GTSAC 4 cut(s) 380, 641, 686, 740
NsiI ATGCAT 2 cut(s) 390, 1424
NspI RCATGY 6 cut(s) 108, 388, 642, 1207, 1422, 1680
PagI TCATGA 1 cut(s) 28
PauI GCGCGC 1 cut(s) 180
PciI ACATGT 2 cut(s) 1203, 1676
PctI GAATGC 2 cut(s) 1244, 1590
PflMI CCANNNNNTGG 4 cut(s) 122, 464, 833, 1225
PkrI GCNGC 4 cut(s) 186, 352, 518, 881
PleI GAGTC 7 cut(s) 33, 296, 796, 1097, 1475, 1657, 1914
PluTI GGCGCC 1 cut(s) 62
PpsI GAGTC 7 cut(s) 33, 296, 796, 1097, 1475, 1657, 1914
PscI ACATGT 2 cut(s) 1203, 1676
PshBI ATTAAT 1 cut(s) 755
Psp124BI GAGCTC 1 cut(s) 1152
Psp6I CCWGG 3 cut(s) 819, 1298, 1329
PspFI CCCAGC 1 cut(s) 522
PspGI CCWGG 3 cut(s) 819, 1298, 1329
PspN4I GGNNCC 7 cut(s) 60, 114, 818, 825, 1277, 1304, 1749
PspPI GGNCC 4 cut(s) 467, 836, 1228, 1327
PsuI RGATCY 4 cut(s) 198, 564, 921, 1893
PteI GCGCGC 1 cut(s) 180
PvuII CAGCTG 2 cut(s) 1035, 1620
RsaI GTAC 2 cut(s) 1128, 1181
RsaNI GTAC 2 cut(s) 1127, 1180
SacI GAGCTC 1 cut(s) 1152
SatI GCNGC 4 cut(s) 185, 351, 517, 880
Sau3AI GATC 9 cut(s) 7, 198, 331, 564, 793, 921, 1500, 1540, 1893
Sau96I GGNCC 4 cut(s) 467, 836, 1228, 1327
ScaI AGTACT 1 cut(s) 1181
SchI GAGTC 7 cut(s) 34, 296, 797, 1097, 1475, 1658, 1915
ScrFI CCNGG 8 cut(s) 821, 1132, 1272, 1273, 1300, 1331, 1744, 1745
SduI GDGCHC 5 cut(s) 939, 1152, 1278, 1684, 1750
SexAI ACCWGGT 2 cut(s) 1298, 1329
SfcI CTRYAG 2 cut(s) 133, 1030
SfoI GGCGCC 1 cut(s) 60
SinI GGWCC 3 cut(s) 467, 1228, 1327
SmaI CCCGGG 2 cut(s) 1273, 1745
SmlI CTYRAG 4 cut(s) 22, 560, 1289, 1864
SmoI CTYRAG 4 cut(s) 22, 560, 1289, 1864
Sse9I AATT 9 cut(s) 244, 262, 326, 662, 969, 1078, 1159, 1572, 1813
SsiI CCGC 5 cut(s) 259, 1027, 1285, 1398, 1920
SspDI GGCGCC 1 cut(s) 58
SspI AATATT 4 cut(s) 759, 1090, 1357, 1462
SspMI CTAG 4 cut(s) 188, 471, 698, 840
SstI GAGCTC 1 cut(s) 1152
StyD4I CCNGG 8 cut(s) 819, 1130, 1270, 1271, 1298, 1329, 1742, 1743
StyI CCWWGG 3 cut(s) 1323, 1444, 1798
TaaI ACNGT 5 cut(s) 137, 674, 941, 1375, 1456
TaiI ACGT 1 cut(s) 1170
TaqI TCGA 6 cut(s) 318, 603, 1503, 1594, 1684, 1931
TasI AATT 9 cut(s) 244, 262, 326, 662, 969, 1078, 1159, 1572, 1813
TatI WGTACW 1 cut(s) 1179
TscAI CASTG 5 cut(s) 123, 212, 465, 939, 1778
TseFI GTSAC 4 cut(s) 380, 641, 686, 740
TseI GCWGC 4 cut(s) 184, 350, 516, 879
Tsp45I GTSAC 4 cut(s) 380, 641, 686, 740
TspDTI ATGAA 5 cut(s) 87, 151, 1111, 1236, 1720
TspMI CCCGGG 2 cut(s) 1271, 1743
TspRI CASTG 5 cut(s) 123, 212, 465, 939, 1778
Van91I CCANNNNNTGG 4 cut(s) 122, 464, 833, 1225
Vha464I CTTAAG 1 cut(s) 560
VneI GTGCAC 1 cut(s) 935
VpaK11BI GGWCC 3 cut(s) 467, 1228, 1327
VspI ATTAAT 1 cut(s) 755
XapI RAATTY 3 cut(s) 244, 326, 662
XceI RCATGY 6 cut(s) 108, 388, 642, 1207, 1422, 1680
XmaI CCCGGG 2 cut(s) 1271, 1743
XmiI GTMKAC 1 cut(s) 1809
XspI CTAG 4 cut(s) 188, 471, 698, 840
ZrmI AGTACT 1 cut(s) 1181
Zsp2I ATGCAT 2 cut(s) 390, 1424
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.