Rh1DG302200

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000226
Physical Location & Seq
Forward (+)
52881021 .. 52881953
933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG302200.1

Sequence Viewer

Length: 933 bp
ATGGCAGTTGAGTACTTCCAGAAAGAAGCAAACAAAAACAGAACCGTTAGTATTGAAGATGGTGATTATGAGTCTGATGATGCTGCGGAAATCAAACACTTCAGTCATCAACATCGTTTAGTCACTAATGATCATCGTCAGGAGGTTAAGGATGACAGAATAATTGCTTGTCAGGGTTGTATTCAACCCATCACTGAAGACTTCTACATATGTACTAAACAAGAAGAAGAATCTTGCCATTTCTATCTCCACAAAAATTGTGCTCGATTGCCAGAAAGGACGCTTCTCCCTTTGCTTCACCAACACCAGTTAATACTCCTCGCTCGGGCTCCTTCTATTGACGGCGTGTTTCAATGTTCTATATGTGGTATCTTTCACCAAGGCTTTGTATACAGCTGTGAGGATCAATGTGCTTTGCCAACCGGCAAAAACCCTTTCTACCTTGACCTTGAGTGCAGCATTTATTGGGAGAACAAAGATCTTAAACATGAGTCTCATGCTCACCGCCTCGTCCTCGAAAAAAATTGGGAGGACGTCTGTTGCAGGGGTTGTGGTTCAAAAATATTTTTCTTATTCAGTTGTAAGAGATGCAATTTTCATCTTTGCATAGCCAGTGTTGGATTACCTCTTACTGCTGAGCACCGATACGACACGCATCCTCTAAAGCTCACCTATGAAAGTATAGAAGACGAGCTTGGTGAATACTACTGTGAGATATGTGAAGGAAAAAGGGATCCAGCACATTGGTTCAACTGGTGCAAAGAGTGCGAGTTTGACTGTCATCCTCATTGCATTATAGGGAGGTATCCGCGAGTCAAGTTGGGGAGCACTTACAAGCACGAGGCTCATGTCCAACCCCTCGTCACCCTTGTTAGCAAGTGGAAGAGCCCCATTCGATTCGATAAGAGAGACAACATGCATTCTTCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

310

Amino Acids

36.28

Weight (kDa)

6.08

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 34 - 88 6.5e-06 C1 domain
C1_2 PF03107 215 - 265 9.9e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 537
AccI GTMKAC 1 cut(s) 390
AccII CGCG 1 cut(s) 811
AciI CCGC 3 cut(s) 86, 505, 809
AclWI GGATC 3 cut(s) 411, 728, 741
AcuI CTGAAG 2 cut(s) 85, 216
AcyI GRCGYC 1 cut(s) 534
AfaI GTAC 2 cut(s) 14, 214
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 5 cut(s) 56, 185, 353, 558, 751
AjuI GAANNNNNNNTTGG 2 cut(s) 678, 710
AluBI AGCT 3 cut(s) 396, 667, 694
AluI AGCT 3 cut(s) 396, 667, 694
Alw21I GWGCWC 3 cut(s) 265, 642, 830
Alw26I GTCTC 2 cut(s) 498, 903
AlwI GGATC 3 cut(s) 411, 728, 741
Ama87I CYCGRG 1 cut(s) 324
ApeKI GCWGC 2 cut(s) 83, 456
AsuHPI GGTGA 7 cut(s) 74, 290, 368, 494, 661, 710, 856
AvaI CYCGRG 1 cut(s) 324
BamHI GGATCC 1 cut(s) 733
BanII GRGCYC 2 cut(s) 331, 890
BauI CACGAG 1 cut(s) 839
BbsI GAAGAC 2 cut(s) 204, 693
Bbv12I GWGCWC 3 cut(s) 265, 642, 830
BbvI GCAGC 2 cut(s) 70, 468
BccI CCATC 2 cut(s) 53, 197
BceAI ACGGC 1 cut(s) 358
BciVI GTATCC 1 cut(s) 816
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 2 cut(s) 498, 903
BfuI GTATCC 1 cut(s) 816
BglII AGATCT 1 cut(s) 478
BisI GCNGC 2 cut(s) 84, 457
BlpI GCTNAGC 1 cut(s) 636
BlsI GCNGC 2 cut(s) 85, 458
BmcAI AGTACT 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 324
BmiI GGNNCC 2 cut(s) 330, 735
BmsI GCATC 3 cut(s) 70, 578, 664
BpiI GAAGAC 2 cut(s) 204, 693
Bpu1102I GCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 470
BsaHI GRCGYC 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 422
Bse1I ACTGG 3 cut(s) 307, 612, 758
Bse3DI GCAATG 1 cut(s) 787
BseDI CCNNGG 1 cut(s) 379
BseGI GGATG 3 cut(s) 157, 655, 781
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 787
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 3 cut(s) 307, 612, 758
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 2 cut(s) 70, 468
BsgI GTGCAG 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 811
BsiHKAI GWGCWC 3 cut(s) 265, 642, 830
BsiHKCI CYCGRG 1 cut(s) 324
BsiSI CCGG 1 cut(s) 423
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 2 cut(s) 498, 903
BsmI GAATGC 1 cut(s) 919
BsoBI CYCGRG 1 cut(s) 324
Bsp1286I GDGCHC 5 cut(s) 265, 331, 642, 830, 890
Bsp143I GATC 4 cut(s) 130, 403, 478, 733
Bsp1720I GCTNAGC 1 cut(s) 636
BspACI CCGC 3 cut(s) 86, 505, 809
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 1 cut(s) 811
BspLI GGNNCC 2 cut(s) 330, 735
BspPI GGATC 3 cut(s) 411, 728, 741
BspQI GCTCTTC 1 cut(s) 878
BsrDI GCAATG 1 cut(s) 787
BsrFI RCCGGY 1 cut(s) 422
BsrI ACTGG 3 cut(s) 307, 612, 758
BssAI RCCGGY 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 379
BssMI GATC 4 cut(s) 130, 403, 478, 733
BssNAI GTATAC 1 cut(s) 391
BssNI GRCGYC 1 cut(s) 534
BssSI CACGAG 1 cut(s) 839
BssT1I CCWWGG 1 cut(s) 379
Bst1107I GTATAC 1 cut(s) 391
Bst2BI CACGAG 1 cut(s) 839
Bst4CI ACNGT 3 cut(s) 46, 710, 779
Bst6I CTCTTC 1 cut(s) 878
BstACI GRCGYC 1 cut(s) 534
BstAPI GCANNNNNTGC 1 cut(s) 765
BstDEI CTNAG 1 cut(s) 636
BstF5I GGATG 3 cut(s) 157, 655, 781
BstFNI CGCG 1 cut(s) 811
BstKTI GATC 4 cut(s) 133, 406, 481, 736
BstMAI GTCTC 2 cut(s) 498, 903
BstMBI GATC 4 cut(s) 130, 403, 478, 733
BstMWI GCNNNNNNNGC 1 cut(s) 765
BstNSI RCATGY 1 cut(s) 919
BstUI CGCG 1 cut(s) 811
BstV1I GCAGC 2 cut(s) 70, 468
BstV2I GAAGAC 2 cut(s) 204, 693
BstX2I RGATCY 2 cut(s) 478, 733
BstXI CCANNNNNNTGG 1 cut(s) 744
BstYI RGATCY 2 cut(s) 478, 733
BstZ17I GTATAC 1 cut(s) 391
BsuI GTATCC 1 cut(s) 816
BtsCI GGATG 3 cut(s) 157, 655, 781
BtsIMutI CAGTG 2 cut(s) 192, 619
Cfr10I RCCGGY 1 cut(s) 422
CseI GACGC 1 cut(s) 289
Csp6I GTAC 2 cut(s) 13, 213
CspCI CAANNNNNGTGG 2 cut(s) 239, 274
CviAII CATG 4 cut(s) 488, 497, 848, 916
CviJI RGCY 8 cut(s) 329, 384, 396, 611, 667, 694, 845, 888
CviKI_1 RGCY 8 cut(s) 329, 384, 396, 611, 667, 694, 845, 888
CviQI GTAC 2 cut(s) 13, 213
DdeI CTNAG 1 cut(s) 636
DpnI GATC 4 cut(s) 132, 405, 480, 735
DpnII GATC 4 cut(s) 130, 403, 478, 733
Eam1104I CTCTTC 1 cut(s) 878
EarI CTCTTC 1 cut(s) 878
Eco130I CCWWGG 1 cut(s) 379
Eco24I GRGCYC 2 cut(s) 331, 890
Eco57I CTGAAG 2 cut(s) 85, 216
Eco88I CYCGRG 1 cut(s) 324
EcoT14I CCWWGG 1 cut(s) 379
EcoT22I ATGCAT 1 cut(s) 921
EcoT38I GRGCYC 2 cut(s) 331, 890
ErhI CCWWGG 1 cut(s) 379
FaeI CATG 4 cut(s) 491, 500, 851, 919
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FatI CATG 4 cut(s) 487, 496, 847, 915
FauNDI CATATG 1 cut(s) 209
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 1 cut(s) 390
Fnu4HI GCNGC 2 cut(s) 84, 457
FokI GGATG 3 cut(s) 164, 642, 768
FriOI GRGCYC 2 cut(s) 331, 890
Fsp4HI GCNGC 2 cut(s) 84, 457
GluI GCNGC 2 cut(s) 84, 457
HapII CCGG 1 cut(s) 423
HgaI GACGC 1 cut(s) 289
Hin1I GRCGYC 1 cut(s) 534
Hin1II CATG 4 cut(s) 491, 500, 851, 919
HinfI GANTC 5 cut(s) 71, 230, 491, 813, 897
HpaII CCGG 1 cut(s) 423
HphI GGTGA 7 cut(s) 74, 290, 368, 494, 661, 710, 856
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 19, 140
Hpy8I GTNNAC 1 cut(s) 391
HpyAV CCTTC 2 cut(s) 342, 716
HpyCH4III ACNGT 3 cut(s) 46, 710, 779
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 7 cut(s) 456, 543, 591, 606, 759, 792, 919
HpyF10VI GCNNNNNNNGC 1 cut(s) 765
HpyF3I CTNAG 1 cut(s) 636
HpySE526I ACGT 1 cut(s) 534
Hsp92I GRCGYC 1 cut(s) 534
Hsp92II CATG 4 cut(s) 491, 500, 851, 919
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 4 cut(s) 130, 403, 478, 733
LguI GCTCTTC 1 cut(s) 878
LmnI GCTCC 2 cut(s) 334, 825
Lsp1109I GCAGC 2 cut(s) 70, 468
LweI GCATC 3 cut(s) 70, 578, 664
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 2 cut(s) 121, 862
MalI GATC 4 cut(s) 132, 405, 480, 735
MboI GATC 4 cut(s) 130, 403, 478, 733
MboII GAAGA 7 cut(s) 68, 209, 236, 239, 698, 895, 915
MflI RGATCY 2 cut(s) 478, 733
MhlI GDGCHC 5 cut(s) 265, 331, 642, 830, 890
MluCI AATT 4 cut(s) 162, 256, 523, 592
MlyI GAGTC 3 cut(s) 80, 500, 822
MmeI TCCRAC 2 cut(s) 598, 877
Mph1103I ATGCAT 1 cut(s) 921
MseI TTAA 3 cut(s) 147, 311, 483
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 1 cut(s) 423
Mva1269I GAATGC 1 cut(s) 919
MvnI CGCG 1 cut(s) 811
MwoI GCNNNNNNNGC 1 cut(s) 765
NdeI CATATG 1 cut(s) 209
NdeII GATC 4 cut(s) 130, 403, 478, 733
NlaIII CATG 4 cut(s) 491, 500, 851, 919
NlaIV GGNNCC 2 cut(s) 330, 735
NmuCI GTSAC 2 cut(s) 121, 862
NsiI ATGCAT 1 cut(s) 921
NspI RCATGY 1 cut(s) 919
PciSI GCTCTTC 1 cut(s) 878
PctI GAATGC 1 cut(s) 919
PfeI GAWTC 2 cut(s) 230, 897
PkrI GCNGC 2 cut(s) 85, 458
PleI GAGTC 3 cut(s) 79, 499, 821
PpsI GAGTC 3 cut(s) 79, 499, 821
PspN4I GGNNCC 2 cut(s) 330, 735
PsuI RGATCY 2 cut(s) 478, 733
PvuII CAGCTG 1 cut(s) 396
RsaI GTAC 2 cut(s) 14, 214
RsaNI GTAC 2 cut(s) 13, 213
SapI GCTCTTC 1 cut(s) 878
SaqAI TTAA 3 cut(s) 147, 311, 483
SatI GCNGC 2 cut(s) 84, 457
Sau3AI GATC 4 cut(s) 130, 403, 478, 733
ScaI AGTACT 1 cut(s) 14
SchI GAGTC 3 cut(s) 80, 500, 822
SduI GDGCHC 5 cut(s) 265, 331, 642, 830, 890
SfaNI GCATC 3 cut(s) 70, 578, 664
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 4 cut(s) 162, 256, 523, 592
SsiI CCGC 3 cut(s) 86, 505, 809
SspI AATATT 1 cut(s) 564
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 3 cut(s) 46, 710, 779
TaiI ACGT 1 cut(s) 537
TaqI TCGA 4 cut(s) 265, 516, 895, 900
TasI AATT 4 cut(s) 162, 256, 523, 592
TatI WGTACW 2 cut(s) 12, 212
TfiI GAWTC 2 cut(s) 230, 897
Tru1I TTAA 3 cut(s) 147, 311, 483
Tru9I TTAA 3 cut(s) 147, 311, 483
TscAI CASTG 2 cut(s) 199, 619
TseFI GTSAC 2 cut(s) 121, 862
TseI GCWGC 2 cut(s) 83, 456
Tsp45I GTSAC 2 cut(s) 121, 862
TspDTI ATGAA 2 cut(s) 587, 690
TspRI CASTG 2 cut(s) 199, 619
XceI RCATGY 1 cut(s) 919
XmiI GTMKAC 1 cut(s) 390
ZraI GACGTC 1 cut(s) 535
ZrmI AGTACT 1 cut(s) 14
Zsp2I ATGCAT 1 cut(s) 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.