AT5G42840

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000226
Physical Location & Seq
Forward (+)
17179073 .. 17181365
2293 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42840.1

Sequence Viewer

Length: 2016 bp
ATGAGTTTGTACTTTGAAGGACACGAGCATCACGTATCAATCATTAAACATCGTGATGGTTTGGAATGCGATGCTTGCGATCGGTCGTTTGGGGATGTCATCTCATGCGGTGAATGCAAGTTTACTGTTCACAGGAAATGTGTATTTATGTTCGACATACAAGAGATATTCGACCACCCTTCTCATGATGGACATTGTCTCAAGCTTCTCACGACAGGAGCTCCTGATGACACCGACCAAAAATGTCATCTCTGCGGTAAAAAGACCAAGCGCCTTCTTTATCATTGCTCTGATTGTAAACTCAATGTGGATATTGATTGCATAATTGATTACATATGTGCTCGATCCCCTCTGAAATTGCCATGGCACGACCACCCTCTAATCAAGGTTGATCTCGGAGCTAATATGCCTTGCGACTTTTGTAATGAAAGTGGCATAGACTATTGTTGCCCTCGTTGCAGGTTCATGATTCATGAGAGATGTGCCTCTGTATTTGACTCACCAGAGATTACTCACCCTTCTCATGTCAGACACCCTCTTAAGCTTCGCAGCAATGGAGCTCCAGATTACACAAACTTAAATTGTCATATATGTGGAGATGCCACTGGGAACTTACTATATCATTGTGATATTTGTAAGTTCAACTTGAATATGCGTTGTGCGATTCGAGAACCCACACCAGTTGCTCTTTCAAATATGAAGGTCCATGAGCATACACTCACACTCATGCCAAGATTGATCTCCTTTGTTTGTGATGCTTGTGGGATGAAAGGCGACCGTGCTCCCTATGTATGTGTTCAATGCGATTTCATGATCTTCCATCAAGAGTGTGCTAAATTACCTCGTGTCATTCATGTCAACCACCATGACCACCGCGTTTCGTACAAGTATCCTCTTGGTCCCGGAGAATGGAGATGTGGAGTTTGTTGGGAAGAAATTGATTGGTCATATGGGGCTTATTCATGCTCTCTTTGTCCTAATTATGCTATGCATTCACTGTGTGCAACAAGGAAAGATGTATGGGATGGAAGAGAGCTTGATGGAGTACTTGAAGAAATTGAAGATATTGAGCCATTTAAGAGGAATGATGATAACACCATCACTCATTTCACTCATGAACATAACTTGAGCAAAGATGGTATTACTTTGAAGAAGAGCATCTTGTGTGTAGCATGTGTTTGTCCCATCGGTACCGACACATTCTACAACTGTTCAGAATCATCTTGCAGTTTCGTTCTCCACGAAACGTGTGCTAATATTTCAAAGAAGAAACGACATTTTCTGAGCCCAGTACCTCTCGTTCTTTGCCTCCAAAACCAACGCAACACAGAAACTTGCAATGCTTGTCAACAAGTTTTTTGCAAAGGATTTATCTACTCTTCATTTCCAAAAACTGTATATCGGGAAAAGTTCTATGACTTACAATGCAGTTCGATTACTGTTCCTTTTTTCCATGGAAGTCATGATCATCATTTACTCTTCCTTAAACTTGGACGCGGTAATGTGAAGACTTGCGAGTGTTGCGGCATCGTCCAAAAAGAGTATGCTATAGGTTGTACCAAATGCAATTACTTTTTGGATTTTCGTTGTGCCACTCTACCATTAACGGTAAGGCTTCCAAGGTATGATGATCATCCACTCACTCTTTGTTATGGTGATGAAAAAGCAAGCGGAAAATGTTGGTGTGATATTTGCGAAAGAGAAACAAATCCAAAGAGTTGGTTCTACACTTGTAAAGATTGCGGGGTTACTTTTCATATATTTTGTGTAGTTTGGGATATCAGATTCTCCAAACAAGGAGAAACAATCAGAGACGGTGTTGAATTGCTGCCAAACAATACATCTTCACGGCCACTTTGCAAGAATTGTCAATGCCGTTGCCTAGGTCCCTTCTTTGTTAAGGATTATGACAACATATGCTATTGTTCTTACTACTGTTATGCACGGCTTCATTCTCTGAGGTACATTTGGAGTAAATTCAGATGCCCTCCATGGATATCAGAACCCAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

671

Amino Acids

77.15

Weight (kDa)

6.83

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 60 - 108 4.2e-09 C1 domain
C1_2 PF03107 121 - 162 1.4e-08 C1 domain
C1_2 PF03107 173 - 221 2.7e-10 C1 domain
C1_2 PF03107 235 - 278 3.6e-11 C1 domain
C1_2 PF03107 288 - 335 3.7e-09 C1 domain
C1_2 PF03107 370 - 418 1.6e-08 C1 domain
C1_2 PF03107 541 - 590 5.8e-12 C1 domain
C1-like_CT PF22926 607 - 647 2e-12 C1 domain-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 450
Acc65I GGTACC 1 cut(s) 1190
AccB1I GGYRCC 1 cut(s) 1190
AccII CGCG 2 cut(s) 876, 1497
AciI CCGC 7 cut(s) 108, 255, 874, 1497, 1524, 1671, 1743
AclWI GGATC 1 cut(s) 339
AcoI YGGCCR 1 cut(s) 1850
AcsI RAATTY 1 cut(s) 1976
AdeI CACNNNGTG 1 cut(s) 1001
AfaI GTAC 8 cut(s) 11, 884, 1047, 1192, 1293, 1558, 1964, 2011
AfiI CCNNNNNNNGG 1 cut(s) 909
AflII CTTAAG 1 cut(s) 539
AflIII ACRYGT 1 cut(s) 1247
AluBI AGCT 6 cut(s) 205, 221, 401, 544, 560, 1036
AluI AGCT 6 cut(s) 205, 221, 401, 544, 560, 1036
Alw21I GWGCWC 4 cut(s) 223, 343, 562, 784
Alw26I GTCTC 2 cut(s) 203, 1806
AlwI GGATC 1 cut(s) 339
AoxI GGCC 1 cut(s) 1850
ApeKI GCWGC 2 cut(s) 549, 1828
ApoI RAATTY 1 cut(s) 1976
Asp718I GGTACC 1 cut(s) 1190
AspA2I CCTAGG 1 cut(s) 1882
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 3 cut(s) 703, 899, 1886
AsuC2I CCSGG 1 cut(s) 903
AsuHPI GGTGA 4 cut(s) 122, 492, 506, 1667
AvaII GGWCC 3 cut(s) 703, 899, 1886
AvrII CCTAGG 1 cut(s) 1882
BanI GGYRCC 1 cut(s) 1190
BanII GRGCYC 3 cut(s) 223, 562, 1289
BauI CACGAG 2 cut(s) 23, 843
BbsI GAAGAC 1 cut(s) 1514
Bbv12I GWGCWC 4 cut(s) 223, 343, 562, 784
BbvI GCAGC 2 cut(s) 561, 1815
BccI CCATC 8 cut(s) 50, 182, 828, 1019, 1034, 1106, 1130, 1193
BceAI ACGGC 3 cut(s) 1860, 1865, 1961
BcgI CGANNNNNNTGC 2 cut(s) 1232, 1266
BciVI GTATCC 1 cut(s) 900
BclI TGATCA 2 cut(s) 1465, 1630
BcnI CCSGG 1 cut(s) 903
BcoDI GTCTC 2 cut(s) 203, 1806
BfaI CTAG 1 cut(s) 1883
BfmI CTRYAG 1 cut(s) 1548
BfoI RGCGCY 1 cut(s) 274
BfrI CTTAAG 1 cut(s) 539
BfuAI ACCTGC 1 cut(s) 450
BfuI GTATCC 1 cut(s) 900
BisI GCNGC 3 cut(s) 550, 1525, 1829
BlnI CCTAGG 1 cut(s) 1882
BlsI GCNGC 3 cut(s) 551, 1526, 1830
BmcAI AGTACT 2 cut(s) 1047, 2011
Bme1390I CCNGG 1 cut(s) 903
Bme18I GGWCC 3 cut(s) 703, 899, 1886
BmgT120I GGNCC 3 cut(s) 703, 899, 1886
BmiI GGNNCC 3 cut(s) 901, 1192, 1888
BmrFI CCNGG 1 cut(s) 903
BmrI ACTGGG 3 cut(s) 615, 1283, 2001
BmsI GCATC 7 cut(s) 37, 61, 589, 745, 1167, 1536, 1973
BmuI ACTGGG 3 cut(s) 615, 1283, 2001
BpiI GAAGAC 1 cut(s) 1514
BpmI CTGGAG 1 cut(s) 546
BpuEI CTTGAG 2 cut(s) 185, 1147
BpuMI CCSGG 1 cut(s) 903
BsaAI YACGTR 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 1632
BsaJI CCNNGG 5 cut(s) 362, 1453, 1619, 1882, 1991
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 909
Bse1I ACTGG 4 cut(s) 610, 680, 1289, 2007
Bse3DI GCAATG 3 cut(s) 283, 559, 1345
Bse8I GATNNNNATC 1 cut(s) 1632
BseDI CCNNGG 5 cut(s) 362, 1453, 1619, 1882, 1991
BseGI GGATG 4 cut(s) 100, 771, 1030, 1633
BseJI GATNNNNATC 1 cut(s) 1632
BseLI CCNNNNNNNGG 1 cut(s) 909
BseMI GCAATG 3 cut(s) 283, 559, 1345
BseMII CTCAG 2 cut(s) 1274, 1949
BseNI ACTGG 4 cut(s) 610, 680, 1289, 2007
BseXI GCAGC 2 cut(s) 561, 1815
Bsh1236I CGCG 2 cut(s) 876, 1497
Bsh1285I CGRYCG 3 cut(s) 82, 86, 778
BshFI GGCC 1 cut(s) 1852
BshNI GGYRCC 1 cut(s) 1190
BsiEI CGRYCG 3 cut(s) 82, 86, 778
BsiHKAI GWGCWC 4 cut(s) 223, 343, 562, 784
BsiSI CCGG 1 cut(s) 903
BslFI GGGAC 3 cut(s) 885, 1167, 1872
BslI CCNNNNNNNGG 1 cut(s) 909
BsmAI GTCTC 2 cut(s) 203, 1806
BsmBI CGTCTC 1 cut(s) 1806
BsmFI GGGAC 3 cut(s) 885, 1167, 1872
BsmI GAATGC 3 cut(s) 71, 119, 991
BsnI GGCC 1 cut(s) 1852
Bsp1286I GDGCHC 5 cut(s) 223, 343, 562, 784, 1289
Bsp143I GATC 7 cut(s) 79, 344, 391, 738, 813, 1465, 1630
Bsp19I CCATGG 3 cut(s) 362, 1453, 1991
BspACI CCGC 7 cut(s) 108, 255, 874, 1497, 1524, 1671, 1743
BspANI GGCC 1 cut(s) 1852
BspCNI CTCAG 2 cut(s) 1275, 1950
BspFNI CGCG 2 cut(s) 876, 1497
BspHI TCATGA 6 cut(s) 184, 465, 472, 810, 1114, 1462
BspLI GGNNCC 3 cut(s) 901, 1192, 1888
BspMI ACCTGC 1 cut(s) 450
BspPI GGATC 1 cut(s) 339
BspQI GCTCTTC 1 cut(s) 1148
BspT107I GGYRCC 1 cut(s) 1190
BspTI CTTAAG 1 cut(s) 539
BsrDI GCAATG 3 cut(s) 283, 559, 1345
BsrI ACTGG 4 cut(s) 610, 680, 1289, 2007
BssECI CCNNGG 5 cut(s) 362, 1453, 1619, 1882, 1991
BssMI GATC 7 cut(s) 79, 344, 391, 738, 813, 1465, 1630
BssSI CACGAG 2 cut(s) 23, 843
BssT1I CCWWGG 5 cut(s) 362, 1453, 1619, 1882, 1991
Bst2BI CACGAG 2 cut(s) 23, 843
Bst4CI ACNGT 9 cut(s) 127, 779, 999, 1211, 1396, 1441, 1609, 1817, 1937
Bst6I CTCTTC 4 cut(s) 1024, 1148, 1384, 1484
BstAFI CTTAAG 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 2 cut(s) 76, 1669
BstDEI CTNAG 2 cut(s) 1283, 1958
BstDSI CCRYGG 3 cut(s) 362, 1453, 1991
BstF5I GGATG 4 cut(s) 100, 771, 1030, 1633
BstFNI CGCG 2 cut(s) 876, 1497
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstKTI GATC 7 cut(s) 82, 347, 394, 741, 816, 1468, 1633
BstMAI GTCTC 2 cut(s) 203, 1806
BstMBI GATC 7 cut(s) 79, 344, 391, 738, 813, 1465, 1630
BstMCI CGRYCG 3 cut(s) 82, 86, 778
BstMWI GCNNNNNNNGC 4 cut(s) 75, 114, 456, 1521
BstNSI RCATGY 1 cut(s) 1176
BstSCI CCNGG 1 cut(s) 901
BstSFI CTRYAG 1 cut(s) 1548
BstUI CGCG 2 cut(s) 876, 1497
BstV1I GCAGC 2 cut(s) 561, 1815
BstV2I GAAGAC 1 cut(s) 1514
BstXI CCANNNNNNTGG 1 cut(s) 1719
BsuI GTATCC 1 cut(s) 900
BsuRI GGCC 1 cut(s) 1852
BtgI CCRYGG 3 cut(s) 362, 1453, 1991
BtgZI GCGATG 1 cut(s) 84
BtsCI GGATG 4 cut(s) 100, 771, 1030, 1633
BtsIMutI CAGTG 2 cut(s) 603, 995
BveI ACCTGC 1 cut(s) 450
Cac8I GCNNGC 2 cut(s) 76, 1669
CciI TCATGA 6 cut(s) 184, 465, 472, 810, 1114, 1462
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 3 cut(s) 703, 899, 1886
CseI GACGC 1 cut(s) 1503
Csp6I GTAC 8 cut(s) 10, 883, 1046, 1191, 1292, 1557, 1963, 2010
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviQI GTAC 8 cut(s) 10, 883, 1046, 1191, 1292, 1557, 1963, 2010
DdeI CTNAG 2 cut(s) 1283, 1958
DpnI GATC 7 cut(s) 81, 346, 393, 740, 815, 1467, 1632
DpnII GATC 7 cut(s) 79, 344, 391, 738, 813, 1465, 1630
DraIII CACNNNGTG 1 cut(s) 1001
EaeI YGGCCR 1 cut(s) 1850
Eam1104I CTCTTC 4 cut(s) 1024, 1148, 1384, 1484
EarI CTCTTC 4 cut(s) 1024, 1148, 1384, 1484
Ecl136II GAGCTC 2 cut(s) 221, 560
Eco130I CCWWGG 5 cut(s) 362, 1453, 1619, 1882, 1991
Eco24I GRGCYC 3 cut(s) 223, 562, 1289
Eco32I GATATC 2 cut(s) 1780, 1998
Eco47I GGWCC 3 cut(s) 703, 899, 1886
Eco53kI GAGCTC 2 cut(s) 221, 560
EcoICRI GAGCTC 2 cut(s) 221, 560
EcoO109I RGGNCCY 1 cut(s) 1886
EcoRV GATATC 2 cut(s) 1780, 1998
EcoT14I CCWWGG 5 cut(s) 362, 1453, 1619, 1882, 1991
EcoT22I ATGCAT 1 cut(s) 993
EcoT38I GRGCYC 3 cut(s) 223, 562, 1289
ErhI CCWWGG 5 cut(s) 362, 1453, 1619, 1882, 1991
Esp3I CGTCTC 1 cut(s) 1806
FalI AAGNNNNNCTT 4 cut(s) 629, 661, 1145, 1177
FaqI GGGAC 3 cut(s) 885, 1167, 1872
FauI CCCGC 1 cut(s) 1736
FauNDI CATATG 3 cut(s) 335, 949, 1916
FbaI TGATCA 2 cut(s) 1465, 1630
Fnu4HI GCNGC 3 cut(s) 550, 1525, 1829
FokI GGATG 4 cut(s) 107, 778, 1037, 1620
FriOI GRGCYC 3 cut(s) 223, 562, 1289
Fsp4HI GCNGC 3 cut(s) 550, 1525, 1829
FspBI CTAG 1 cut(s) 1883
GlaI GCGC 1 cut(s) 272
GluI GCNGC 3 cut(s) 550, 1525, 1829
GsuI CTGGAG 1 cut(s) 546
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 1 cut(s) 1852
HapII CCGG 1 cut(s) 903
HgaI GACGC 1 cut(s) 1503
HhaI GCGC 1 cut(s) 273
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HincII GTYRAC 2 cut(s) 859, 1349
HindII GTYRAC 2 cut(s) 859, 1349
HindIII AAGCTT 2 cut(s) 203, 542
HinfI GANTC 5 cut(s) 469, 497, 664, 1217, 1785
HpaII CCGG 1 cut(s) 903
HphI GGTGA 4 cut(s) 122, 492, 506, 1667
Hpy166II GTNNAC 5 cut(s) 123, 130, 299, 859, 1349
Hpy8I GTNNAC 5 cut(s) 123, 130, 299, 859, 1349
HpyAV CCTTC 6 cut(s) 11, 189, 284, 528, 694, 1900
HpyCH4III ACNGT 9 cut(s) 127, 779, 999, 1211, 1396, 1441, 1609, 1817, 1937
HpyCH4IV ACGT 2 cut(s) 33, 1247
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 114, 456, 1521
HpyF3I CTNAG 2 cut(s) 1283, 1958
HpySE526I ACGT 2 cut(s) 33, 1247
HspAI GCGC 1 cut(s) 271
KpnI GGTACC 1 cut(s) 1194
Ksp22I TGATCA 2 cut(s) 1465, 1630
Kzo9I GATC 7 cut(s) 79, 344, 391, 738, 813, 1465, 1630
LguI GCTCTTC 1 cut(s) 1148
LmnI GCTCC 6 cut(s) 218, 226, 398, 557, 565, 787
Lsp1109I GCAGC 2 cut(s) 561, 1815
LweI GCATC 7 cut(s) 37, 61, 589, 745, 1167, 1536, 1973
MaeI CTAG 1 cut(s) 1883
MaeII ACGT 2 cut(s) 33, 1247
MaeIII GTNAC 1 cut(s) 1747
MalI GATC 7 cut(s) 81, 346, 393, 740, 815, 1467, 1632
MboI GATC 7 cut(s) 79, 344, 391, 738, 813, 1465, 1630
MhlI GDGCHC 5 cut(s) 223, 343, 562, 784, 1289
MlyI GAGTC 1 cut(s) 491
Mph1103I ATGCAT 1 cut(s) 993
MseI TTAA 7 cut(s) 45, 540, 578, 1077, 1485, 1604, 1899
MslI CAYNNNNRTG 3 cut(s) 54, 591, 725
MspCI CTTAAG 1 cut(s) 539
MspI CCGG 1 cut(s) 903
MspR9I CCNGG 1 cut(s) 903
Mva1269I GAATGC 3 cut(s) 71, 119, 991
MvnI CGCG 2 cut(s) 876, 1497
MwoI GCNNNNNNNGC 4 cut(s) 75, 114, 456, 1521
NciI CCSGG 1 cut(s) 903
NcoI CCATGG 3 cut(s) 362, 1453, 1991
NdeI CATATG 3 cut(s) 335, 949, 1916
NdeII GATC 7 cut(s) 79, 344, 391, 738, 813, 1465, 1630
NlaIV GGNNCC 3 cut(s) 901, 1192, 1888
NsiI ATGCAT 1 cut(s) 993
NspI RCATGY 1 cut(s) 1176
PagI TCATGA 6 cut(s) 184, 465, 472, 810, 1114, 1462
PciSI GCTCTTC 1 cut(s) 1148
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 1239
PctI GAATGC 3 cut(s) 71, 119, 991
PfeI GAWTC 4 cut(s) 469, 664, 1217, 1785
PflFI GACNNNGTC 1 cut(s) 195
PfoI TCCNGGA 1 cut(s) 901
PkrI GCNGC 3 cut(s) 551, 1526, 1830
Ple19I CGATCG 1 cut(s) 82
PleI GAGTC 1 cut(s) 491
PpsI GAGTC 1 cut(s) 491
Ppu21I YACGTR 1 cut(s) 34
PpuMI RGGWCCY 1 cut(s) 1886
Psp124BI GAGCTC 2 cut(s) 223, 562
Psp5II RGGWCCY 1 cut(s) 1886
PspN4I GGNNCC 3 cut(s) 901, 1192, 1888
PspPI GGNCC 3 cut(s) 703, 899, 1886
PspPPI RGGWCCY 1 cut(s) 1886
PsrI GAACNNNNNNTAC 2 cut(s) 1284, 1316
PsyI GACNNNGTC 1 cut(s) 195
PvuI CGATCG 1 cut(s) 82
RsaI GTAC 8 cut(s) 11, 884, 1047, 1192, 1293, 1558, 1964, 2011
RsaNI GTAC 8 cut(s) 10, 883, 1046, 1191, 1292, 1557, 1963, 2010
RseI CAYNNNNRTG 3 cut(s) 54, 591, 725
SacI GAGCTC 2 cut(s) 223, 562
SapI GCTCTTC 1 cut(s) 1148
SaqAI TTAA 7 cut(s) 45, 540, 578, 1077, 1485, 1604, 1899
SatI GCNGC 3 cut(s) 550, 1525, 1829
Sau3AI GATC 7 cut(s) 79, 344, 391, 738, 813, 1465, 1630
Sau96I GGNCC 3 cut(s) 703, 899, 1886
ScaI AGTACT 2 cut(s) 1047, 2011
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 1 cut(s) 903
SduI GDGCHC 5 cut(s) 223, 343, 562, 784, 1289
SfaNI GCATC 7 cut(s) 37, 61, 589, 745, 1167, 1536, 1973
SfcI CTRYAG 1 cut(s) 1548
SinI GGWCC 3 cut(s) 703, 899, 1886
SmiMI CAYNNNNRTG 3 cut(s) 54, 591, 725
SmlI CTYRAG 3 cut(s) 200, 539, 1126
SmoI CTYRAG 3 cut(s) 200, 539, 1126
SsiI CCGC 7 cut(s) 108, 255, 874, 1497, 1524, 1671, 1743
SspI AATATT 1 cut(s) 1258
SspMI CTAG 1 cut(s) 1883
SstI GAGCTC 2 cut(s) 223, 562
StyD4I CCNGG 1 cut(s) 901
StyI CCWWGG 5 cut(s) 362, 1453, 1619, 1882, 1991
TaaI ACNGT 9 cut(s) 127, 779, 999, 1211, 1396, 1441, 1609, 1817, 1937
TaiI ACGT 2 cut(s) 36, 1250
TaqI TCGA 5 cut(s) 153, 171, 343, 667, 1433
TaqII GACCGA 1 cut(s) 72
TatI WGTACW 3 cut(s) 9, 1045, 2009
TauI GCSGC 1 cut(s) 1527
TfiI GAWTC 4 cut(s) 469, 664, 1217, 1785
Tru1I TTAA 7 cut(s) 45, 540, 578, 1077, 1485, 1604, 1899
Tru9I TTAA 7 cut(s) 45, 540, 578, 1077, 1485, 1604, 1899
TscAI CASTG 2 cut(s) 610, 1002
TseI GCWGC 2 cut(s) 549, 1828
TspRI CASTG 2 cut(s) 610, 1002
Tth111I GACNNNGTC 1 cut(s) 195
Vha464I CTTAAG 1 cut(s) 539
VpaK11BI GGWCC 3 cut(s) 703, 899, 1886
XapI RAATTY 1 cut(s) 1976
XceI RCATGY 1 cut(s) 1176
XmaJI CCTAGG 1 cut(s) 1882
XspI CTAG 1 cut(s) 1883
ZrmI AGTACT 2 cut(s) 1047, 2011
Zsp2I ATGCAT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.