MD00G1084300.v1.1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000226
Physical Location & Seq
Forward (+)
16842495 .. 16848839
6345 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1084300.v1.1.491

Sequence Viewer

Length: 1797 bp
ATGGATCCGAAAATTCATTTCTCTCACCGGCATTCATTGACTTTGAAGGAAGAGAAGAAGAATGATGGTCCACTGGAGTTCTGTAACGGGTGCCTGGAACCAGTGATTGGGCCTCACTATGCTTGCGACACGTGTAATATGGAGTGGTATCGTGGCTTCCGTTGGATTATACATAAGCAATGTGCAGAGTTACCCCGTGAGATCCCCCACCCGATCCACCCCAATCACCCTCTTATTCTCACCGACAAAGAATTCCACCGCGGCATCCAATGTGGTGTGTGTAGCCAATTATTTCCAAGAGAAGTCTGTCTAGCATACTATTGTTCCGGATGCAACTTCTGGATAGACATCAAATGTGCTTCCCAGTGGCAAAACCAAAACGACGGTCATAAGCACAACTTCACCACCCTTACGGGCCCCATTAAATTCACCTGCGATTTCTGTGGCCAAGGGGATGACGATCTTCAATACAACTACATCTGTAAAATCTGCCAGCTCATTGTCCATCGCAAATGCTCTTGGTTACCACTCCCAGTCAAAATACCATGGCACCAACACCAACTCAAACTTACCTGGTGGTTCCAAGACAAGTACCCCAATTACCAAGATTTCTGTGACATCTGCGAAGAAAATGTGGACGGAATCCGTGCTTTGTATTGTTGTCATGATCATGAATGTCGTGGCTATGCTGCCCACAGTAAATGCATAAGAATTTCGGTGCTCATCCCCGTCGATGATAATGATGAACCATCCACATCCAAATGTCCCTCAGCCATTGAGACCACCGCTGATGATAAAGCCCTGCAGATCGAGCACTTCAGTCATCCACACATGTTAACCCTCATCGATGGCCAAGAGGTGGCTAGACAAGACGACCAAGATGAAGGAATTACTTGTAACGGTTGCACGCTACCCATCATGAGGGGTGAGTCTTATAGGTCATGCGCACAACAGGCAATAGAAAAGCCATGTAATTTCTCTCTCCACATAAATTGTGCTAAACTACCCCAAAAGACGCTTCTCCCACTTCACGAACACGAGCTCACACTCCTTCCAACAGCATCTTCTGTCGGGGGCGTGTTTATGTGTGACATGTGCGCGTCCTTGAGCCAAGGTTTCTCATACCATTGTCAAGGGTGCGACTACTACCTCGACATTTATTGTAGTCTTCTTTATGAGCGTAGGACTCTCCGTTGTGATGCTCATGATCACACCCTCCGGTTCAGCACAAAGCTCGTGTCCTGCAACAGTTGTCGTACTCGTAAAAAGAATTTCTGCTTCAGATGTGGCAGTGAGAGATGCAACTTCCAACTATGTATTTCGTGTGTTAAATTACCTCTTACGGTCAGGTACAAATACGACGATCATCCTCTCAAACTCACTTATACTAGTGCAAAAAATGACCTCGATGAGTACTATTGTGACAAATGCGAAGGAATACGAGATCGAAAACATTGGTTCTACTCCTGCCCGGATTGTGACTTTGAATGTCATCCTCATTGCATTCGAGGGAGGTATCCGCAAGTCAAGTTAGGGGGCTCTTACAAGCATGATGATCACCAGCACAACGTCGCCCTCGTTGATAAGAGAAAAAGCGAGATTCCTAATGATAAGAGAGAGCACTTACTTCCTTGTTCCAAGTGTTCTGAGATTTGCCAAGGATTGGTATGTGAATGTTTGAAGTGTGGTATTAATATACACCGAGAGCACAAGGAGTTCGCTCATAATGAACTGGGAGGGAGAGGTAATAAGAACAGGAAAAGCCGTCGTGATTTGTTGAAGGATAGTTCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

599

Amino Acids

69.28

Weight (kDa)

6.83

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 71 - 120 1.9e-07 C1 domain
C1_2 PF03107 130 - 172 1.2e-06 C1 domain
C1_2 PF03107 182 - 236 1.8e-06 C1 domain
C1_2 PF03107 273 - 333 3.3e-06 C1 domain
C1_2 PF03107 342 - 388 8.9e-08 C1 domain
C1_2 PF03107 453 - 502 2.9e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 440
Acc16I TGCGCA 1 cut(s) 946
Acc36I ACCTGC 1 cut(s) 440
AccB1I GGYRCC 2 cut(s) 90, 549
AccB7I CCANNNNNTGG 3 cut(s) 107, 859, 1663
AccII CGCG 2 cut(s) 261, 1100
AccIII TCCGGA 1 cut(s) 326
AciI CCGC 4 cut(s) 259, 261, 786, 1520
AclWI GGATC 3 cut(s) 12, 196, 208
AcoI YGGCCR 2 cut(s) 445, 850
AcsI RAATTY 5 cut(s) 12, 251, 425, 711, 1270
AcuI CTGAAG 2 cut(s) 802, 1264
AcvI CACGTG 1 cut(s) 132
AfaI GTAC 4 cut(s) 593, 1258, 1352, 1415
AfiI CCNNNNNNNGG 4 cut(s) 107, 859, 921, 1663
AflIII ACRYGT 4 cut(s) 129, 131, 831, 1092
AgsI TTSAA 5 cut(s) 46, 467, 1487, 1681, 1780
AhlI ACTAGT 1 cut(s) 1388
AjnI CCWGG 2 cut(s) 93, 572
AjuI GAANNNNNNNTTGG 6 cut(s) 90, 122, 1002, 1034, 1048, 1080
AluBI AGCT 3 cut(s) 496, 1042, 1234
AluI AGCT 3 cut(s) 496, 1042, 1234
Alw21I GWGCWC 5 cut(s) 723, 816, 1044, 1623, 1710
Alw26I GTCTC 1 cut(s) 773
AlwI GGATC 3 cut(s) 12, 196, 208
Aor13HI TCCGGA 1 cut(s) 326
AoxI GGCC 4 cut(s) 110, 415, 445, 850
ApaI GGGCCC 1 cut(s) 419
ApeKI GCWGC 1 cut(s) 689
ApoI RAATTY 5 cut(s) 12, 251, 425, 711, 1270
ArsI GACNNNNNNTTYG 4 cut(s) 370, 402, 1223, 1255
AseI ATTAAT 1 cut(s) 1692
AspLEI GCGC 2 cut(s) 947, 1100
AspS9I GGNCC 4 cut(s) 68, 110, 415, 416
AsuC2I CCSGG 1 cut(s) 1472
AsuHPI GGTGA 7 cut(s) 17, 218, 232, 394, 421, 938, 1550
AvaII GGWCC 1 cut(s) 68
BaeGI GKGCMC 1 cut(s) 419
BalI TGGCCA 2 cut(s) 447, 852
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 90, 549
BanII GRGCYC 3 cut(s) 419, 1044, 1541
BarI GAAGNNNNNNTAC 2 cut(s) 140, 172
BauI CACGAG 2 cut(s) 1037, 1235
BbrPI CACGTG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 1160
Bbv12I GWGCWC 5 cut(s) 723, 816, 1044, 1623, 1710
BbvCI CCTCAGC 1 cut(s) 769
BbvI GCAGC 1 cut(s) 676
BccI CCATC 5 cut(s) 59, 513, 757, 842, 923
BceAI ACGGC 1 cut(s) 1749
BcgI CGANNNNNNTGC 2 cut(s) 1216, 1250
BciT130I CCWGG 2 cut(s) 95, 574
BciVI GTATCC 1 cut(s) 1527
BclI TGATCA 3 cut(s) 667, 1207, 1555
BcnI CCSGG 1 cut(s) 1472
BcoDI GTCTC 1 cut(s) 773
BcuI ACTAGT 1 cut(s) 1388
BfaI CTAG 3 cut(s) 311, 864, 1389
BfmI CTRYAG 1 cut(s) 803
BfuAI ACCTGC 1 cut(s) 440
BfuI GTATCC 1 cut(s) 1527
BisI GCNGC 2 cut(s) 262, 690
BlsI GCNGC 2 cut(s) 263, 691
BmcAI AGTACT 1 cut(s) 1415
Bme1390I CCNGG 3 cut(s) 95, 574, 1472
Bme18I GGWCC 1 cut(s) 68
BmgT120I GGNCC 4 cut(s) 68, 110, 415, 416
BmiI GGNNCC 7 cut(s) 6, 92, 99, 417, 418, 551, 581
BmrFI CCNGG 3 cut(s) 95, 574, 1472
BmrI ACTGGG 3 cut(s) 358, 527, 1742
BmsI GCATC 5 cut(s) 273, 320, 1070, 1189, 1289
BmuI ACTGGG 3 cut(s) 358, 527, 1742
BpiI GAAGAC 1 cut(s) 1160
BpmI CTGGAG 1 cut(s) 95
Bpu10I CCTNAGC 1 cut(s) 769
BpuEI CTTGAG 1 cut(s) 1126
BpuMI CCSGG 1 cut(s) 1472
Bsa29I ATCGAT 1 cut(s) 846
BsaAI YACGTR 1 cut(s) 132
BsaBI GATNNNNATC 2 cut(s) 347, 459
BsaI GGTCTC 1 cut(s) 773
BsaJI CCNNGG 5 cut(s) 259, 448, 545, 1111, 1657
BsaWI WCCGGW 2 cut(s) 326, 1218
Bsc4I CCNNNNNNNGG 4 cut(s) 107, 859, 921, 1663
Bse118I RCCGGY 1 cut(s) 27
Bse1I ACTGG 5 cut(s) 78, 101, 364, 533, 1737
Bse3DI GCAATG 2 cut(s) 185, 1498
Bse8I GATNNNNATC 2 cut(s) 347, 459
BseAI TCCGGA 1 cut(s) 326
BseBI CCWGG 2 cut(s) 95, 574
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 5 cut(s) 259, 448, 545, 1111, 1657
BseGI GGATG 9 cut(s) 264, 335, 460, 723, 749, 755, 823, 1366, 1492
BseJI GATNNNNATC 2 cut(s) 347, 459
BseLI CCNNNNNNNGG 4 cut(s) 107, 859, 921, 1663
BseMI GCAATG 2 cut(s) 185, 1498
BseMII CTCAG 3 cut(s) 783, 1638, 1782
BseNI ACTGG 5 cut(s) 78, 101, 364, 533, 1737
BseSI GKGCMC 1 cut(s) 419
BseXI GCAGC 1 cut(s) 676
BsgI GTGCAG 1 cut(s) 204
Bsh1236I CGCG 2 cut(s) 261, 1100
BshFI GGCC 4 cut(s) 112, 417, 447, 852
BshNI GGYRCC 2 cut(s) 90, 549
BshVI ATCGAT 1 cut(s) 846
BsiHKAI GWGCWC 5 cut(s) 723, 816, 1044, 1623, 1710
BsiSI CCGG 4 cut(s) 28, 327, 1219, 1472
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 4 cut(s) 107, 859, 921, 1663
BsmAI GTCTC 1 cut(s) 773
BsmFI GGGAC 1 cut(s) 750
BsmI GAATGC 2 cut(s) 31, 1503
BsnI GGCC 4 cut(s) 112, 417, 447, 852
Bso31I GGTCTC 1 cut(s) 773
Bsp120I GGGCCC 1 cut(s) 415
Bsp1286I GDGCHC 7 cut(s) 419, 723, 816, 1044, 1541, 1623, 1710
Bsp13I TCCGGA 1 cut(s) 326
Bsp19I CCATGG 1 cut(s) 545
BspACI CCGC 4 cut(s) 259, 261, 786, 1520
BspANI GGCC 4 cut(s) 112, 417, 447, 852
BspCNI CTCAG 3 cut(s) 782, 1639, 1783
BspDI ATCGAT 1 cut(s) 846
BspEI TCCGGA 1 cut(s) 326
BspFNI CGCG 2 cut(s) 261, 1100
BspHI TCATGA 4 cut(s) 664, 670, 918, 1204
BspLI GGNNCC 7 cut(s) 6, 92, 99, 417, 418, 551, 581
BspMAI CTGCAG 1 cut(s) 807
BspMI ACCTGC 1 cut(s) 440
BspPI GGATC 3 cut(s) 12, 196, 208
BspT107I GGYRCC 2 cut(s) 90, 549
BspTNI GGTCTC 1 cut(s) 773
BsrDI GCAATG 2 cut(s) 185, 1498
BsrFI RCCGGY 1 cut(s) 27
BsrI ACTGG 5 cut(s) 78, 101, 364, 533, 1737
BssAI RCCGGY 1 cut(s) 27
BssECI CCNNGG 5 cut(s) 259, 448, 545, 1111, 1657
BssSI CACGAG 2 cut(s) 1037, 1235
BssT1I CCWWGG 4 cut(s) 448, 545, 1111, 1657
Bst2BI CACGAG 2 cut(s) 1037, 1235
Bst2UI CCWGG 2 cut(s) 95, 574
Bst4CI ACNGT 5 cut(s) 386, 698, 902, 1250, 1345
Bst6I CTCTTC 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 124, 494, 908
BstDEI CTNAG 3 cut(s) 769, 1647, 1791
BstDSI CCRYGG 2 cut(s) 259, 545
BstEII GGTNACC 1 cut(s) 522
BstF5I GGATG 9 cut(s) 264, 335, 460, 723, 749, 755, 823, 1366, 1492
BstFNI CGCG 2 cut(s) 261, 1100
BstHHI GCGC 2 cut(s) 947, 1100
BstMAI GTCTC 1 cut(s) 773
BstMWI GCNNNNNNNGC 2 cut(s) 811, 953
BstNI CCWGG 2 cut(s) 95, 574
BstNSI RCATGY 2 cut(s) 835, 1096
BstPI GGTNACC 1 cut(s) 522
BstSCI CCNGG 3 cut(s) 93, 572, 1470
BstSFI CTRYAG 1 cut(s) 803
BstSLI GKGCMC 1 cut(s) 419
BstUI CGCG 2 cut(s) 261, 1100
BstV1I GCAGC 1 cut(s) 676
BstV2I GAAGAC 1 cut(s) 1160
BstX2I RGATCY 2 cut(s) 4, 201
BstYI RGATCY 2 cut(s) 4, 201
Bsu15I ATCGAT 1 cut(s) 846
BsuI GTATCC 1 cut(s) 1527
BsuRI GGCC 4 cut(s) 112, 417, 447, 852
BsuTUI ATCGAT 1 cut(s) 846
BtgI CCRYGG 2 cut(s) 259, 545
BtgZI GCGATG 1 cut(s) 491
BtsCI GGATG 9 cut(s) 264, 335, 460, 723, 749, 755, 823, 1366, 1492
BtsI GCAGTG 1 cut(s) 1297
BtsIMutI CAGTG 4 cut(s) 71, 108, 371, 1297
BveI ACCTGC 1 cut(s) 440
Cac8I GCNNGC 3 cut(s) 124, 494, 908
CciI TCATGA 4 cut(s) 664, 670, 918, 1204
CfoI GCGC 2 cut(s) 947, 1100
Cfr10I RCCGGY 1 cut(s) 27
Cfr13I GGNCC 4 cut(s) 68, 110, 415, 416
Cfr42I CCGCGG 1 cut(s) 262
ClaI ATCGAT 1 cut(s) 846
CseI GACGC 2 cut(s) 1024, 1089
CsiI ACCWGGT 1 cut(s) 572
Csp6I GTAC 4 cut(s) 592, 1257, 1351, 1414
CspCI CAANNNNNGTGG 2 cut(s) 974, 1009
CviQI GTAC 4 cut(s) 592, 1257, 1351, 1414
DdeI CTNAG 3 cut(s) 769, 1647, 1791
EaeI YGGCCR 2 cut(s) 445, 850
Eam1104I CTCTTC 1 cut(s) 45
EarI CTCTTC 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 1042
Eco130I CCWWGG 4 cut(s) 448, 545, 1111, 1657
Eco24I GRGCYC 3 cut(s) 419, 1044, 1541
Eco31I GGTCTC 1 cut(s) 773
Eco47I GGWCC 1 cut(s) 68
Eco53kI GAGCTC 1 cut(s) 1042
Eco57I CTGAAG 2 cut(s) 802, 1264
Eco72I CACGTG 1 cut(s) 132
Eco91I GGTNACC 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 1042
EcoO109I RGGNCCY 1 cut(s) 416
EcoO65I GGTNACC 1 cut(s) 522
EcoRI GAATTC 1 cut(s) 251
EcoRII CCWGG 2 cut(s) 93, 572
EcoT14I CCWWGG 4 cut(s) 448, 545, 1111, 1657
EcoT22I ATGCAT 1 cut(s) 707
EcoT38I GRGCYC 3 cut(s) 419, 1044, 1541
ErhI CCWWGG 4 cut(s) 448, 545, 1111, 1657
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FaqI GGGAC 1 cut(s) 750
FbaI TGATCA 3 cut(s) 667, 1207, 1555
Fnu4HI GCNGC 2 cut(s) 262, 690
FokI GGATG 9 cut(s) 251, 342, 467, 710, 736, 742, 810, 1353, 1479
FriOI GRGCYC 3 cut(s) 419, 1044, 1541
Fsp4HI GCNGC 2 cut(s) 262, 690
FspAI RTGCGCAY 1 cut(s) 946
FspBI CTAG 3 cut(s) 311, 864, 1389
FspI TGCGCA 1 cut(s) 946
GlaI GCGC 2 cut(s) 946, 1099
GluI GCNGC 2 cut(s) 262, 690
GsuI CTGGAG 1 cut(s) 95
HaeIII GGCC 4 cut(s) 112, 417, 447, 852
HapII CCGG 4 cut(s) 28, 327, 1219, 1472
HgaI GACGC 2 cut(s) 1024, 1089
HhaI GCGC 2 cut(s) 947, 1100
Hin6I GCGC 2 cut(s) 945, 1098
HinP1I GCGC 2 cut(s) 945, 1098
HincII GTYRAC 1 cut(s) 837
HindII GTYRAC 1 cut(s) 837
HinfI GANTC 4 cut(s) 642, 929, 1186, 1600
HpaI GTTAAC 1 cut(s) 837
HpaII CCGG 4 cut(s) 28, 327, 1219, 1472
HphI GGTGA 7 cut(s) 17, 218, 232, 394, 421, 938, 1550
Hpy166II GTNNAC 3 cut(s) 71, 637, 837
Hpy188I TCNGA 4 cut(s) 9, 1283, 1648, 1792
Hpy188III TCNNGA 8 cut(s) 327, 340, 665, 671, 919, 1031, 1205, 1769
Hpy8I GTNNAC 3 cut(s) 71, 637, 837
Hpy99I CGWCG 5 cut(s) 386, 734, 1364, 1574, 1770
HpyAV CCTTC 5 cut(s) 40, 878, 1061, 1427, 1774
HpyCH4III ACNGT 5 cut(s) 386, 698, 902, 1250, 1345
HpyCH4IV ACGT 2 cut(s) 131, 1569
HpyCH4V TGCA 9 cut(s) 185, 333, 705, 805, 906, 1245, 1302, 1394, 1503
HpyF10VI GCNNNNNNNGC 2 cut(s) 811, 953
HpyF3I CTNAG 3 cut(s) 769, 1647, 1791
HpySE526I ACGT 2 cut(s) 131, 1569
HspAI GCGC 2 cut(s) 945, 1098
Kpn2I TCCGGA 1 cut(s) 326
Ksp22I TGATCA 3 cut(s) 667, 1207, 1555
KspAI GTTAAC 1 cut(s) 837
KspI CCGCGG 1 cut(s) 262
Lsp1109I GCAGC 1 cut(s) 676
LweI GCATC 5 cut(s) 273, 320, 1070, 1189, 1289
MabI ACCWGGT 1 cut(s) 572
MaeI CTAG 3 cut(s) 311, 864, 1389
MaeII ACGT 2 cut(s) 131, 1569
MaeIII GTNAC 8 cut(s) 83, 189, 522, 614, 896, 1088, 1421, 1478
MboII GAAGA 7 cut(s) 62, 67, 70, 455, 638, 1056, 1160
MflI RGATCY 2 cut(s) 4, 201
MhlI GDGCHC 7 cut(s) 419, 723, 816, 1044, 1541, 1623, 1710
MlsI TGGCCA 2 cut(s) 447, 852
MluNI TGGCCA 2 cut(s) 447, 852
MlyI GAGTC 2 cut(s) 938, 1180
MmeI TCCRAC 3 cut(s) 143, 1079, 1333
Mox20I TGGCCA 2 cut(s) 447, 852
Mph1103I ATGCAT 1 cut(s) 707
MroI TCCGGA 1 cut(s) 326
MscI TGGCCA 2 cut(s) 447, 852
MseI TTAA 4 cut(s) 423, 836, 1329, 1692
MslI CAYNNNNRTG 2 cut(s) 669, 760
Msp20I TGGCCA 2 cut(s) 447, 852
MspA1I CMGCKG 2 cut(s) 261, 788
MspI CCGG 4 cut(s) 28, 327, 1219, 1472
MspR9I CCNGG 3 cut(s) 95, 574, 1472
Mva1269I GAATGC 2 cut(s) 31, 1503
MvaI CCWGG 2 cut(s) 95, 574
MvnI CGCG 2 cut(s) 261, 1100
MwoI GCNNNNNNNGC 2 cut(s) 811, 953
NciI CCSGG 1 cut(s) 1472
NcoI CCATGG 1 cut(s) 545
NlaIV GGNNCC 7 cut(s) 6, 92, 99, 417, 418, 551, 581
NmuCI GTSAC 4 cut(s) 614, 1088, 1421, 1478
NsbI TGCGCA 1 cut(s) 946
NsiI ATGCAT 1 cut(s) 707
NspI RCATGY 2 cut(s) 835, 1096
PagI TCATGA 4 cut(s) 664, 670, 918, 1204
PaqCI CACCTGC 1 cut(s) 440
PciI ACATGT 2 cut(s) 831, 1092
PcsI WCGNNNNNNNCGW 2 cut(s) 157, 1575
PctI GAATGC 2 cut(s) 31, 1503
PfeI GAWTC 2 cut(s) 642, 1600
PflMI CCANNNNNTGG 3 cut(s) 107, 859, 1663
PkrI GCNGC 2 cut(s) 263, 691
PleI GAGTC 2 cut(s) 937, 1180
PmaCI CACGTG 1 cut(s) 132
PmlI CACGTG 1 cut(s) 132
PpsI GAGTC 2 cut(s) 937, 1180
Ppu21I YACGTR 1 cut(s) 132
PscI ACATGT 2 cut(s) 831, 1092
PshBI ATTAAT 1 cut(s) 1692
Psp124BI GAGCTC 1 cut(s) 1044
Psp6I CCWGG 2 cut(s) 93, 572
PspCI CACGTG 1 cut(s) 132
PspEI GGTNACC 1 cut(s) 522
PspGI CCWGG 2 cut(s) 93, 572
PspN4I GGNNCC 7 cut(s) 6, 92, 99, 417, 418, 551, 581
PspOMI GGGCCC 1 cut(s) 415
PspPI GGNCC 4 cut(s) 68, 110, 415, 416
PstI CTGCAG 1 cut(s) 807
PsuI RGATCY 2 cut(s) 4, 201
RsaI GTAC 4 cut(s) 593, 1258, 1352, 1415
RsaNI GTAC 4 cut(s) 592, 1257, 1351, 1414
RseI CAYNNNNRTG 2 cut(s) 669, 760
SacI GAGCTC 1 cut(s) 1044
SacII CCGCGG 1 cut(s) 262
SaqAI TTAA 4 cut(s) 423, 836, 1329, 1692
SatI GCNGC 2 cut(s) 262, 690
Sau96I GGNCC 4 cut(s) 68, 110, 415, 416
ScaI AGTACT 1 cut(s) 1415
SchI GAGTC 2 cut(s) 938, 1180
ScrFI CCNGG 3 cut(s) 95, 574, 1472
SduI GDGCHC 7 cut(s) 419, 723, 816, 1044, 1541, 1623, 1710
SexAI ACCWGGT 1 cut(s) 572
SfaNI GCATC 5 cut(s) 273, 320, 1070, 1189, 1289
SfcI CTRYAG 1 cut(s) 803
Sfr303I CCGCGG 1 cut(s) 262
SgrBI CCGCGG 1 cut(s) 262
SinI GGWCC 1 cut(s) 68
SmiMI CAYNNNNRTG 2 cut(s) 669, 760
SmlI CTYRAG 1 cut(s) 1105
SmoI CTYRAG 1 cut(s) 1105
SpeI ACTAGT 1 cut(s) 1388
SsiI CCGC 4 cut(s) 259, 261, 786, 1520
SspMI CTAG 3 cut(s) 311, 864, 1389
SstI GAGCTC 1 cut(s) 1044
StyD4I CCNGG 3 cut(s) 93, 572, 1470
StyI CCWWGG 4 cut(s) 448, 545, 1111, 1657
TaaI ACNGT 5 cut(s) 386, 698, 902, 1250, 1345
TaiI ACGT 2 cut(s) 134, 1572
TaqI TCGA 7 cut(s) 732, 810, 846, 1152, 1407, 1447, 1507
TatI WGTACW 1 cut(s) 1413
TauI GCSGC 1 cut(s) 264
TfiI GAWTC 2 cut(s) 642, 1600
Tru1I TTAA 4 cut(s) 423, 836, 1329, 1692
Tru9I TTAA 4 cut(s) 423, 836, 1329, 1692
TscAI CASTG 4 cut(s) 78, 108, 371, 1297
TseFI GTSAC 4 cut(s) 614, 1088, 1421, 1478
TseI GCWGC 1 cut(s) 689
Tsp45I GTSAC 4 cut(s) 614, 1088, 1421, 1478
TspDTI ATGAA 6 cut(s) 5, 24, 687, 759, 897, 1743
TspGWI ACGGA 4 cut(s) 149, 635, 654, 1181
TspRI CASTG 4 cut(s) 78, 108, 371, 1297
Van91I CCANNNNNTGG 3 cut(s) 107, 859, 1663
VpaK11BI GGWCC 1 cut(s) 68
VspI ATTAAT 1 cut(s) 1692
XapI RAATTY 5 cut(s) 12, 251, 425, 711, 1270
XceI RCATGY 2 cut(s) 835, 1096
XspI CTAG 3 cut(s) 311, 864, 1389
ZrmI AGTACT 1 cut(s) 1415
Zsp2I ATGCAT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.