Rw0G000030

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00001
OG0000226
Physical Location & Seq
Reverse (-)
45630 .. 51567
5938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000030.1

Sequence Viewer

Length: 2766 bp
ATGCCGATTTTTTCTTATTTTTTGATGCATATGGCCTGCTTTGATACCACATTTAACTTTGATATTGACCTAAAATGTGCTTCCAATTTCAAAAACATGGGGTGTATACTACACTTCAGTCACAAGCACATATTGACCTTGAGTGATAATCCATCTGGAATTGGTCCACCAGTCTCTTGCATTGGATGCCTAGAGCAAGTTCTTGGACCTGGCTATATTTGCAAAAGGAATTTGTTGAGGGAGGGAAGCTGCTCCATTGTTCTGCATAAGTCGTGTGCAGAGCTACCTCTTGAAATCCACCACCCGATGCACCACCAACACTCACTTACGCTTAACCTAAATGGAGCACGAGAATGCCACTGTGATGCTTGTTACCAAGGCAGCAGATTTACTTACAATTGTTTCCAATGCGACTTTAACCTTCACCTTAAATGTGCTTCTGATTGGAAAGGCTTTCAACATTTAATCACGAGCATCCATCTCCAGCACCCTATGCACAATAAGCATCCACTTCTTCTTATCACAAGCAAATCAAGAAGCTACAGTCGGTATGCATGTGATATTTGTCGCAAAGTGTTCAATGGCTTCTCTTACACATGTTCTGAATGTCGCTTCGACATTGACATCAAATGTGCCTCCAATTTCAGAAACATCGATTGTATAGTACATTTCAGTCACAAACATATATTGAGCTTAAGTGATAGTCCATCTGGAGGTGGTCCACCAGTCTCTTGTATTGGGTGCCTGGAGCCCGTGCTTGGTCCTAGCTACATTTGTAAAAGGAATTTAAGGGACAAAAGCTGCTCCATTCATCTGCATAAATCATGTGCAGAGCTACCTCTTGAAATCCAACACCCAATGCACCACAAACACTCACTTATTCTCAACCTAAATGGAGCACGAGAATGCCATTGTGATGCTTGTGACCAAGATTGCAGCCGCAGATTCACTTACAGCTGTTTCCAATGTGACTTCAACATCGACCTAAAATGTGCTTCTGAGAAAGGCTTCAAACATTTTAGTCACGAACATCCATTAATGTTCAAGAGGGGCAATAAAGCAGAGGAATATACTGGTCTACTAGTAATTTGCGATGGGTGCCAAGATCCAATACTTGGACCTAGCTACACATGCATCAATACATACCGACGTCACAAATGTTGCTTCAATCTCCATAAATCATGTGTGGAGTTACCCAGTGAGATCCAGCACCCAGTGCACCGTCAACACCCACTTTTTCTCCTCAATTCAATTCAGAATATCAAAGTTCGTTGCTTGTGTAATGCTTGCAACCAGCCTTGCATATACCGCTACAATTGTTCCATATGTGATTTCAACCTTCACCTCAAATGTGCCTCCAATTGGGAAAACATTATTGGAGATGCCTCTCACGAGCATCAGTTCATTGTGCTACCCATGGAATTGGCTGACCTCCATATCAATTGTCACATTTGTGGTGACTACTGGAATGGCAGCGCCTACTATATCTGTAGCATTTGCCAACTCTTGGTCCATCAGGAATGTGCTTCATTACCACATGACATTAAAATGTCCGGGCACCAACATCGCCTCAAGCTAACCTGGTTTCTTGAAGACATTTACCCCAAGGACCAGCTTTGTGTAGTCTGTCGTTCTAGTGTTGAAAAATCTCGCGCTGTTTATTATTGTCATGAATGTTGTGGCTATGTTTCCCACACTACGTGCATGATACTTGAGTATTTTCGGGAAGAAGAAAACCCAAACAGATTCTCTGCGGATGATGATGAGGAGTTCGATGATGATGGGCAAATAGAGCACTTCAGTCATCAGCATTTGTTACTCGTTAATGATCATCGTGAGCTGGTTCAAGATGAGAGGACAATTACTTGTGAAGGTTGCATTCGACCCATCAATACCATCACTGAAACCTTTTACAGCTGTACGAACCAAGAACAGTCGTGCCATTTCTTTCTCCACGATATCTGTGCTCGATTACCAGCAAAGATGTTTATCCCACTCCTTCACTCACATGCGTTCACACTCCTTTCTCGTGCTCCTTCTTTTGACGGCGTGTTTCAGTGTTATATGTGTGGCATCTTTAACCAAGGCTTTGTATACAGTTGTCAGGAATGCGCTTCTCCAGCAGGCGACAATCTTTTCTACCTTGACCTTGAGTGCAGTATGTATTGGAGGGACAAGATTCTTAAACATGAGTCTCATGCTCACCAGCTCCTTCTATATACAGAATGGGAGGACGTCTATTGCAGGGGTTGTGGTTCCGATATATTTTTCTGCTTTAGTTGTAAGAAATGCAACTACTATCTTTGTATTTCCTGTGTTAAATTACCTCTTACTGGTATGCACCGATATGACGAGCATCCTCTCAAGCTCACCTATGCTAGTGTTGAAGACGAGCTAGGTGAATATTACTGTGAAGTATGTGAAGGGACAAGAAATCCAGCACATTGGTTCTACGAGTGCAAAGACTGTGAGTTTGATTGTCATCCTCATTGCATTCTGGGGAGGTATCCGTATGTCAAGCTAGGGAGCACTTACAAGCATGATGCTCATGCAGCGCACCACGTCACTCTTGTTAGTAAGTGGAAGAGCCCCATTCGGCTGGATAAGAGAGACAACATTCTTCCTTGTGAGAAGTGTGGTATACTTTGCAAGGGATTGGTCTTTGAATGCAAAGAGTGCAATATAAATTTTCACCGAGACGGATGTTGTGGGACTATAAATTTGGAATGTTCTCGATCGTCTCCTCAGATCAAAGAGCTAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

921

Amino Acids

106.05

Weight (kDa)

6.42

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 104 - 146 2.9e-07 C1 domain
C1_2 PF03107 165 - 212 3.5e-10 C1 domain
C1_2 PF03107 288 - 332 1.4e-06 C1 domain
C1_2 PF03107 406 - 452 2.3e-07 C1 domain
C1_2 PF03107 519 - 569 1.4e-06 C1 domain
C1_2 PF03107 782 - 832 1.4e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 1153, 2238
AccB1I GGYRCC 3 cut(s) 741, 1098, 1557
AccB7I CCANNNNNTGG 2 cut(s) 1115, 1507
AccI GTMKAC 4 cut(s) 106, 1078, 2094, 2641
AccII CGCG 1 cut(s) 1653
AciI CCGC 3 cut(s) 940, 1309, 1754
AclWI GGATC 2 cut(s) 1100, 1198
AcsI RAATTY 4 cut(s) 229, 784, 2686, 2719
AcuI CTGAAG 2 cut(s) 100, 1783
AcyI GRCGYC 2 cut(s) 1150, 2235
AdeI CACNNNGTG 2 cut(s) 1216, 1701
AfaI GTAC 2 cut(s) 666, 1921
AfiI CCNNNNNNNGG 6 cut(s) 713, 758, 1115, 1362, 1507, 2333
AflII CTTAAG 1 cut(s) 694
AflIII ACRYGT 1 cut(s) 596
AhlI ACTAGT 1 cut(s) 1081
AjiI CACGTC 1 cut(s) 2563
AjnI CCWGG 3 cut(s) 208, 744, 1580
AjuI GAANNNNNNNTTGG 2 cut(s) 1359, 1391
AleI CACNNNNGTG 1 cut(s) 1452
Alw21I GWGCWC 7 cut(s) 349, 901, 1221, 1797, 1969, 2035, 2531
Alw26I GTCTC 6 cut(s) 178, 733, 2199, 2604, 2691, 2745
Alw44I GTGCAC 1 cut(s) 1217
AlwI GGATC 2 cut(s) 1100, 1198
AoxI GGCC 1 cut(s) 33
ApaLI GTGCAC 1 cut(s) 1217
ApeKI GCWGC 6 cut(s) 249, 381, 801, 936, 1473, 2552
ApoI RAATTY 4 cut(s) 229, 784, 2686, 2719
ArsI GACNNNNNNTTYG 4 cut(s) 2456, 2488, 2704, 2736
AseI ATTAAT 1 cut(s) 1037
Asp700I GAANNNNTTC 1 cut(s) 1007
AspLEI GCGC 4 cut(s) 1478, 1655, 2114, 2557
AspS9I GGNCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
AsuC2I CCSGG 1 cut(s) 1555
AsuHPI GGTGA 7 cut(s) 416, 1334, 1469, 2195, 2362, 2411, 2684
AvaII GGWCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
BaeGI GKGCMC 2 cut(s) 1221, 1560
BaeI ACNNNNGTAYC 2 cut(s) 1700, 1733
BanI GGYRCC 3 cut(s) 741, 1098, 1557
BanII GRGCYC 2 cut(s) 753, 2591
BauI CACGAG 5 cut(s) 348, 469, 900, 1391, 2028
BbsI GAAGAC 2 cut(s) 1599, 2394
Bbv12I GWGCWC 7 cut(s) 349, 901, 1221, 1797, 1969, 2035, 2531
BbvI GCAGC 6 cut(s) 236, 393, 788, 948, 1485, 2564
BccI CCATC 8 cut(s) 160, 486, 715, 1088, 1521, 1775, 1895, 1904
BceAI ACGGC 1 cut(s) 2062
BcgI CGANNNNNNTGC 4 cut(s) 1547, 1581, 1946, 1980
BciT130I CCWGG 3 cut(s) 210, 746, 1582
BciVI GTATCC 1 cut(s) 2517
BclI TGATCA 1 cut(s) 1828
BcnI CCSGG 1 cut(s) 1555
BcoDI GTCTC 6 cut(s) 178, 733, 2199, 2604, 2691, 2745
BcuI ACTAGT 1 cut(s) 1081
BfaI CTAG 8 cut(s) 191, 765, 1082, 1122, 1635, 2379, 2396, 2522
BfmI CTRYAG 2 cut(s) 541, 1489
BfoI RGCGCY 1 cut(s) 1479
BfrI CTTAAG 1 cut(s) 694
BfuI GTATCC 1 cut(s) 2517
BisI GCNGC 7 cut(s) 250, 382, 802, 937, 940, 1474, 2553
BlsI GCNGC 7 cut(s) 251, 383, 803, 938, 941, 1475, 2554
Bme1390I CCNGG 4 cut(s) 210, 746, 1555, 1582
Bme18I GGWCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
BmgBI CACGTC 1 cut(s) 2563
BmgT120I GGNCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
BmiI GGNNCC 5 cut(s) 743, 750, 1100, 1559, 2257
BmrFI CCNGG 4 cut(s) 210, 746, 1555, 1582
BmrI ACTGGG 2 cut(s) 1191, 1208
BmuI ACTGGG 2 cut(s) 1191, 1208
BpiI GAAGAC 2 cut(s) 1599, 2394
BpmI CTGGAG 4 cut(s) 467, 732, 767, 2103
BpuEI CTTGAG 5 cut(s) 160, 1556, 1733, 2171, 2348
BpuMI CCSGG 1 cut(s) 1555
Bsa29I ATCGAT 1 cut(s) 654
BsaAI YACGTR 1 cut(s) 1701
BsaBI GATNNNNATC 2 cut(s) 1988, 2481
BsaHI GRCGYC 2 cut(s) 1150, 2235
BsaJI CCNNGG 4 cut(s) 376, 1416, 1605, 2083
BsaXI ACNNNNNCTCC 2 cut(s) 1224, 1254
Bsc4I CCNNNNNNNGG 6 cut(s) 713, 758, 1115, 1362, 1507, 2333
Bse1I ACTGG 7 cut(s) 170, 725, 1078, 1197, 1214, 1469, 2338
Bse3DI GCAATG 1 cut(s) 2488
Bse8I GATNNNNATC 2 cut(s) 1988, 2481
BseBI CCWGG 3 cut(s) 210, 746, 1582
BseCI ATCGAT 1 cut(s) 654
BseDI CCNNGG 4 cut(s) 376, 1416, 1605, 2083
BseGI GGATG 8 cut(s) 191, 474, 505, 1030, 1762, 2356, 2482, 2708
BseJI GATNNNNATC 2 cut(s) 1988, 2481
BseLI CCNNNNNNNGG 6 cut(s) 713, 758, 1115, 1362, 1507, 2333
BseMI GCAATG 1 cut(s) 2488
BseMII CTCAG 2 cut(s) 990, 2759
BseNI ACTGG 7 cut(s) 170, 725, 1078, 1197, 1214, 1469, 2338
BseRI GAGGAG 3 cut(s) 1232, 1781, 2733
BseSI GKGCMC 2 cut(s) 1221, 1560
BseXI GCAGC 6 cut(s) 236, 393, 788, 948, 1485, 2564
BsgI GTGCAG 3 cut(s) 297, 849, 2176
Bsh1236I CGCG 1 cut(s) 1653
Bsh1285I CGRYCG 1 cut(s) 2738
BshFI GGCC 1 cut(s) 35
BshNI GGYRCC 3 cut(s) 741, 1098, 1557
BshVI ATCGAT 1 cut(s) 654
BsiEI CGRYCG 1 cut(s) 2738
BsiHKAI GWGCWC 7 cut(s) 349, 901, 1221, 1797, 1969, 2035, 2531
BsiSI CCGG 1 cut(s) 1554
BslFI GGGAC 4 cut(s) 806, 2186, 2440, 2725
BslI CCNNNNNNNGG 6 cut(s) 713, 758, 1115, 1362, 1507, 2333
BsmAI GTCTC 6 cut(s) 178, 733, 2199, 2604, 2691, 2745
BsmBI CGTCTC 2 cut(s) 2691, 2745
BsmFI GGGAC 4 cut(s) 806, 2186, 2440, 2725
BsmI GAATGC 6 cut(s) 359, 911, 1878, 2114, 2493, 2672
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 5 cut(s) 1105, 1203, 1828, 2735, 2748
Bsp19I CCATGG 1 cut(s) 1416
BspACI CCGC 3 cut(s) 940, 1309, 1754
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 2 cut(s) 991, 2758
BspDI ATCGAT 1 cut(s) 654
BspFNI CGCG 1 cut(s) 1653
BspHI TCATGA 1 cut(s) 1669
BspLI GGNNCC 5 cut(s) 743, 750, 1100, 1559, 2257
BspPI GGATC 2 cut(s) 1100, 1198
BspQI GCTCTTC 1 cut(s) 2579
BspT107I GGYRCC 3 cut(s) 741, 1098, 1557
BspTI CTTAAG 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 2488
BsrI ACTGG 7 cut(s) 170, 725, 1078, 1197, 1214, 1469, 2338
BssECI CCNNGG 4 cut(s) 376, 1416, 1605, 2083
BssMI GATC 5 cut(s) 1105, 1203, 1828, 2735, 2748
BssNAI GTATAC 3 cut(s) 107, 2095, 2642
BssNI GRCGYC 2 cut(s) 1150, 2235
BssSI CACGAG 5 cut(s) 348, 469, 900, 1391, 2028
BssT1I CCWWGG 4 cut(s) 376, 1416, 1605, 2083
Bst1107I GTATAC 3 cut(s) 107, 2095, 2642
Bst2BI CACGAG 5 cut(s) 348, 469, 900, 1391, 2028
Bst2UI CCWGG 3 cut(s) 210, 746, 1582
Bst4CI ACNGT 7 cut(s) 362, 545, 1223, 1935, 2099, 2411, 2468
Bst6I CTCTTC 1 cut(s) 2579
BstACI GRCGYC 2 cut(s) 1150, 2235
BstAFI CTTAAG 1 cut(s) 694
BstAPI GCANNNNNTGC 4 cut(s) 186, 493, 1216, 2676
BstBAI YACGTR 1 cut(s) 1701
BstC8I GCNNGC 3 cut(s) 37, 1288, 2125
BstDEI CTNAG 3 cut(s) 999, 2745, 2759
BstDSI CCRYGG 1 cut(s) 1416
BstF5I GGATG 8 cut(s) 191, 474, 505, 1030, 1762, 2356, 2482, 2708
BstFNI CGCG 1 cut(s) 1653
BstH2I RGCGCY 1 cut(s) 1479
BstHHI GCGC 4 cut(s) 1478, 1655, 2114, 2557
BstKTI GATC 5 cut(s) 1108, 1206, 1831, 2738, 2751
BstMAI GTCTC 6 cut(s) 178, 733, 2199, 2604, 2691, 2745
BstMBI GATC 5 cut(s) 1105, 1203, 1828, 2735, 2748
BstMCI CGRYCG 1 cut(s) 2738
BstNI CCWGG 3 cut(s) 210, 746, 1582
BstNSI RCATGY 4 cut(s) 558, 600, 1134, 2012
BstSCI CCNGG 4 cut(s) 208, 744, 1553, 1580
BstSFI CTRYAG 2 cut(s) 541, 1489
BstSLI GKGCMC 2 cut(s) 1221, 1560
BstUI CGCG 1 cut(s) 1653
BstV1I GCAGC 6 cut(s) 236, 393, 788, 948, 1485, 2564
BstV2I GAAGAC 2 cut(s) 1599, 2394
BstX2I RGATCY 2 cut(s) 1105, 1203
BstXI CCANNNNNNTGG 3 cut(s) 1423, 2445, 2599
BstYI RGATCY 2 cut(s) 1105, 1203
BstZ17I GTATAC 3 cut(s) 107, 2095, 2642
Bsu15I ATCGAT 1 cut(s) 654
BsuI GTATCC 1 cut(s) 2517
BsuRI GGCC 1 cut(s) 35
BsuTUI ATCGAT 1 cut(s) 654
BtgI CCRYGG 1 cut(s) 1416
BtgZI GCGATG 2 cut(s) 1107, 1550
BtrI CACGTC 1 cut(s) 2563
BtsCI GGATG 8 cut(s) 191, 474, 505, 1030, 1762, 2356, 2482, 2708
BtsIMutI CAGTG 5 cut(s) 358, 1204, 1221, 1899, 2063
Cac8I GCNNGC 3 cut(s) 37, 1288, 2125
CciI TCATGA 1 cut(s) 1669
CfoI GCGC 4 cut(s) 1478, 1655, 2114, 2557
Cfr13I GGNCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
ClaI ATCGAT 1 cut(s) 654
CsiI ACCWGGT 1 cut(s) 1580
Csp6I GTAC 2 cut(s) 665, 1920
CviQI GTAC 2 cut(s) 665, 1920
DdeI CTNAG 3 cut(s) 999, 2745, 2759
DpnI GATC 5 cut(s) 1107, 1205, 1830, 2737, 2750
DpnII GATC 5 cut(s) 1105, 1203, 1828, 2735, 2748
DraIII CACNNNGTG 2 cut(s) 1216, 1701
Eam1104I CTCTTC 1 cut(s) 2579
EarI CTCTTC 1 cut(s) 2579
Eco130I CCWWGG 4 cut(s) 376, 1416, 1605, 2083
Eco24I GRGCYC 2 cut(s) 753, 2591
Eco32I GATATC 1 cut(s) 1960
Eco47I GGWCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
Eco57I CTGAAG 2 cut(s) 100, 1783
EcoRII CCWGG 3 cut(s) 208, 744, 1580
EcoRV GATATC 1 cut(s) 1960
EcoT14I CCWWGG 4 cut(s) 376, 1416, 1605, 2083
EcoT22I ATGCAT 3 cut(s) 30, 556, 1136
EcoT38I GRGCYC 2 cut(s) 753, 2591
ErhI CCWWGG 4 cut(s) 376, 1416, 1605, 2083
Esp3I CGTCTC 2 cut(s) 2691, 2745
FaqI GGGAC 4 cut(s) 806, 2186, 2440, 2725
FauNDI CATATG 2 cut(s) 30, 1325
FbaI TGATCA 1 cut(s) 1828
FblI GTMKAC 4 cut(s) 106, 1078, 2094, 2641
Fnu4HI GCNGC 7 cut(s) 250, 382, 802, 937, 940, 1474, 2553
FokI GGATG 8 cut(s) 198, 461, 492, 1017, 1769, 2343, 2469, 2715
FriOI GRGCYC 2 cut(s) 753, 2591
Fsp4HI GCNGC 7 cut(s) 250, 382, 802, 937, 940, 1474, 2553
FspBI CTAG 8 cut(s) 191, 765, 1082, 1122, 1635, 2379, 2396, 2522
GlaI GCGC 4 cut(s) 1477, 1654, 2113, 2556
GluI GCNGC 7 cut(s) 250, 382, 802, 937, 940, 1474, 2553
GsuI CTGGAG 4 cut(s) 467, 732, 767, 2103
HaeII RGCGCY 1 cut(s) 1479
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 1554
HhaI GCGC 4 cut(s) 1478, 1655, 2114, 2557
Hin1I GRCGYC 2 cut(s) 1150, 2235
Hin6I GCGC 4 cut(s) 1476, 1653, 2112, 2555
HinP1I GCGC 4 cut(s) 1476, 1653, 2112, 2555
HincII GTYRAC 1 cut(s) 1226
HindII GTYRAC 1 cut(s) 1226
HinfI GANTC 4 cut(s) 945, 1746, 2179, 2192
HpaII CCGG 1 cut(s) 1554
HphI GGTGA 7 cut(s) 416, 1334, 1469, 2195, 2362, 2411, 2684
Hpy166II GTNNAC 9 cut(s) 107, 167, 722, 1079, 1219, 1226, 2016, 2095, 2642
Hpy188I TCNGA 7 cut(s) 442, 604, 647, 1000, 1257, 2260, 2748
Hpy8I GTNNAC 9 cut(s) 107, 167, 722, 1079, 1219, 1226, 2016, 2095, 2642
Hpy99I CGWCG 1 cut(s) 1152
HpyAV CCTTC 7 cut(s) 431, 1349, 1865, 2009, 2046, 2222, 2417
HpyCH4III ACNGT 7 cut(s) 362, 545, 1223, 1935, 2099, 2411, 2468
HpyCH4IV ACGT 4 cut(s) 1150, 1700, 2235, 2562
HpyF3I CTNAG 3 cut(s) 999, 2745, 2759
HpySE526I ACGT 4 cut(s) 1150, 1700, 2235, 2562
Hsp92I GRCGYC 2 cut(s) 1150, 2235
HspAI GCGC 4 cut(s) 1476, 1653, 2112, 2555
Ksp22I TGATCA 1 cut(s) 1828
Kzo9I GATC 5 cut(s) 1105, 1203, 1828, 2735, 2748
LguI GCTCTTC 1 cut(s) 2579
LmnI GCTCC 8 cut(s) 257, 344, 748, 809, 896, 2038, 2214, 2526
Lsp1109I GCAGC 6 cut(s) 236, 393, 788, 948, 1485, 2564
MabI ACCWGGT 1 cut(s) 1580
MaeI CTAG 8 cut(s) 191, 765, 1082, 1122, 1635, 2379, 2396, 2522
MaeII ACGT 4 cut(s) 1150, 1700, 2235, 2562
MalI GATC 5 cut(s) 1107, 1205, 1830, 2737, 2750
MboI GATC 5 cut(s) 1105, 1203, 1828, 2735, 2748
MboII GAAGA 7 cut(s) 506, 1604, 1739, 1742, 2399, 2596, 2612
MfeI CAATTG 4 cut(s) 397, 1315, 1360, 1441
MflI RGATCY 2 cut(s) 1105, 1203
MlyI GAGTC 1 cut(s) 2201
MmeI TCCRAC 1 cut(s) 874
Mph1103I ATGCAT 3 cut(s) 30, 556, 1136
MroXI GAANNNNTTC 1 cut(s) 1007
MslI CAYNNNNRTG 8 cut(s) 352, 363, 904, 915, 1452, 1547, 2007, 2346
MspA1I CMGCKG 2 cut(s) 957, 1917
MspCI CTTAAG 1 cut(s) 694
MspI CCGG 1 cut(s) 1554
MspR9I CCNGG 4 cut(s) 210, 746, 1555, 1582
MunI CAATTG 4 cut(s) 397, 1315, 1360, 1441
Mva1269I GAATGC 6 cut(s) 359, 911, 1878, 2114, 2493, 2672
MvaI CCWGG 3 cut(s) 210, 746, 1582
MvnI CGCG 1 cut(s) 1653
NciI CCSGG 1 cut(s) 1555
NcoI CCATGG 1 cut(s) 1416
NdeI CATATG 2 cut(s) 30, 1325
NdeII GATC 5 cut(s) 1105, 1203, 1828, 2735, 2748
NlaIV GGNNCC 5 cut(s) 743, 750, 1100, 1559, 2257
NmuCI GTSAC 9 cut(s) 119, 674, 923, 968, 1022, 1151, 1445, 1457, 2563
NsiI ATGCAT 3 cut(s) 30, 556, 1136
NspI RCATGY 4 cut(s) 558, 600, 1134, 2012
OliI CACNNNNGTG 1 cut(s) 1452
PagI TCATGA 1 cut(s) 1669
PciI ACATGT 1 cut(s) 596
PciSI GCTCTTC 1 cut(s) 2579
PctI GAATGC 6 cut(s) 359, 911, 1878, 2114, 2493, 2672
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 3 cut(s) 945, 1746, 2179
PflMI CCANNNNNTGG 2 cut(s) 1115, 1507
PkrI GCNGC 7 cut(s) 251, 383, 803, 938, 941, 1475, 2554
Ple19I CGATCG 1 cut(s) 2738
PleI GAGTC 1 cut(s) 2200
PpsI GAGTC 1 cut(s) 2200
Ppu21I YACGTR 1 cut(s) 1701
PscI ACATGT 1 cut(s) 596
PshBI ATTAAT 1 cut(s) 1037
Psp6I CCWGG 3 cut(s) 208, 744, 1580
PspGI CCWGG 3 cut(s) 208, 744, 1580
PspN4I GGNNCC 5 cut(s) 743, 750, 1100, 1559, 2257
PspPI GGNCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
PsuI RGATCY 2 cut(s) 1105, 1203
PvuI CGATCG 1 cut(s) 2738
PvuII CAGCTG 2 cut(s) 957, 1917
RsaI GTAC 2 cut(s) 666, 1921
RsaNI GTAC 2 cut(s) 665, 1920
RseI CAYNNNNRTG 8 cut(s) 352, 363, 904, 915, 1452, 1547, 2007, 2346
SapI GCTCTTC 1 cut(s) 2579
SatI GCNGC 7 cut(s) 250, 382, 802, 937, 940, 1474, 2553
Sau3AI GATC 5 cut(s) 1105, 1203, 1828, 2735, 2748
Sau96I GGNCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
SchI GAGTC 1 cut(s) 2201
ScrFI CCNGG 4 cut(s) 210, 746, 1555, 1582
SexAI ACCWGGT 1 cut(s) 1580
SfcI CTRYAG 2 cut(s) 541, 1489
SinI GGWCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
SmiMI CAYNNNNRTG 8 cut(s) 352, 363, 904, 915, 1452, 1547, 2007, 2346
SmlI CTYRAG 6 cut(s) 139, 694, 1571, 1712, 2150, 2363
SmoI CTYRAG 6 cut(s) 139, 694, 1571, 1712, 2150, 2363
SpeI ACTAGT 1 cut(s) 1081
SsiI CCGC 3 cut(s) 940, 1309, 1754
SspI AATATT 1 cut(s) 2405
SspMI CTAG 8 cut(s) 191, 765, 1082, 1122, 1635, 2379, 2396, 2522
StyD4I CCNGG 4 cut(s) 208, 744, 1553, 1580
StyI CCWWGG 4 cut(s) 376, 1416, 1605, 2083
TaaI ACNGT 7 cut(s) 362, 545, 1223, 1935, 2099, 2411, 2468
TaiI ACGT 4 cut(s) 1153, 1703, 2238, 2565
TaqI TCGA 7 cut(s) 615, 654, 981, 1773, 1882, 1969, 2734
TatI WGTACW 1 cut(s) 664
TauI GCSGC 1 cut(s) 942
TfiI GAWTC 3 cut(s) 945, 1746, 2179
TscAI CASTG 5 cut(s) 365, 1204, 1221, 1906, 2063
TseFI GTSAC 9 cut(s) 119, 674, 923, 968, 1022, 1151, 1445, 1457, 2563
TseI GCWGC 6 cut(s) 249, 381, 801, 936, 1473, 2552
Tsp45I GTSAC 9 cut(s) 119, 674, 923, 968, 1022, 1151, 1445, 1457, 2563
TspDTI ATGAA 4 cut(s) 800, 1393, 1518, 1686
TspGWI ACGGA 2 cut(s) 2499, 2715
TspRI CASTG 5 cut(s) 365, 1204, 1221, 1906, 2063
Van91I CCANNNNNTGG 2 cut(s) 1115, 1507
Vha464I CTTAAG 1 cut(s) 694
VneI GTGCAC 1 cut(s) 1217
VpaK11BI GGWCC 7 cut(s) 164, 206, 719, 761, 1118, 1510, 1609
VspI ATTAAT 1 cut(s) 1037
XapI RAATTY 4 cut(s) 229, 784, 2686, 2719
XceI RCATGY 4 cut(s) 558, 600, 1134, 2012
XmiI GTMKAC 4 cut(s) 106, 1078, 2094, 2641
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 8 cut(s) 191, 765, 1082, 1122, 1635, 2379, 2396, 2522
ZraI GACGTC 2 cut(s) 1151, 2236
Zsp2I ATGCAT 3 cut(s) 30, 556, 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.