Rmu_co8226133.1_g000001

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8226133.1
OG0000226
Physical Location & Seq
Forward (+)
27 .. 732
706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8226133.1_g000001.1.cds

Sequence Viewer

Length: 567 bp
atggatcagcttcaacatttcagtcacgtccatccattgatgtttaaggaaggggagcagaaaaacgaagatggtgcagcagcaagtccaccagttgattgttctaagtgtggggatccagtacttggtcctagctacagttgcaaccagtgttccgaattattcatcctccacaagtcatgtgcgttgctgccccgtatgatgcaccacccgatacaccgcaaacatctacttgttctcgtcccagataggactaattacatttgtgatatttgtggcaatgggcattccagctcattcggttacacatgtgagcaagatggcttcgatcttgacctccaatgtgctctcaatttgacctgttacaatgctactacactctccataagtcatgtgcagagctgccccgtgagatgcaccacccgaaacacgtcaaacatccacttgttctcttctcacatagagatcatcgttgtcatttttgtgacaaattgcgtaccaacatattctcttacacatgtgagcaatgtgacttcgagcttgacctccaatgtgcttccaatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

188

Amino Acids

20.77

Weight (kDa)

6.19

Isoelectric Point (pI)

49.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 1 cut(s) 220
AclWI GGATC 3 cut(s) 12, 110, 123
AfaI GTAC 2 cut(s) 123, 498
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 3 cut(s) 308, 429, 517
AgsI TTSAA 1 cut(s) 14
AjiI CACGTC 2 cut(s) 28, 432
AluBI AGCT 5 cut(s) 10, 135, 294, 402, 540
AluI AGCT 5 cut(s) 10, 135, 294, 402, 540
Alw21I GWGCWC 1 cut(s) 349
AlwI GGATC 3 cut(s) 12, 110, 123
ApeKI GCWGC 4 cut(s) 77, 80, 190, 402
AspS9I GGNCC 1 cut(s) 128
AvaII GGWCC 1 cut(s) 128
BamHI GGATCC 1 cut(s) 115
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 4 cut(s) 89, 92, 177, 389
BccI CCATC 3 cut(s) 39, 65, 314
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 4 cut(s) 78, 81, 191, 403
BlsI GCNGC 4 cut(s) 79, 82, 192, 404
BmcAI AGTACT 1 cut(s) 123
Bme18I GGWCC 1 cut(s) 128
BmgBI CACGTC 2 cut(s) 28, 432
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 2 cut(s) 192, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 3 cut(s) 92, 119, 148
Bse3DI GCAATG 2 cut(s) 286, 532
BseGI GGATG 3 cut(s) 31, 165, 438
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 2 cut(s) 286, 532
BseNI ACTGG 3 cut(s) 92, 119, 148
BseXI GCAGC 4 cut(s) 89, 92, 177, 389
BsgI GTGCAG 2 cut(s) 96, 416
BsiHKAI GWGCWC 1 cut(s) 349
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 125
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 286
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 4 cut(s) 4, 115, 328, 465
BspACI CCGC 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 3 cut(s) 12, 110, 123
BsrDI GCAATG 2 cut(s) 286, 532
BsrI ACTGG 3 cut(s) 92, 119, 148
BssMI GATC 4 cut(s) 4, 115, 328, 465
Bst4CI ACNGT 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 457
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 3 cut(s) 31, 165, 438
BstKTI GATC 4 cut(s) 7, 118, 331, 468
BstMBI GATC 4 cut(s) 4, 115, 328, 465
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNSI RCATGY 2 cut(s) 312, 521
BstSFI CTRYAG 1 cut(s) 136
BstV1I GCAGC 4 cut(s) 89, 92, 177, 389
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtrI CACGTC 2 cut(s) 28, 432
BtsCI GGATG 3 cut(s) 31, 165, 438
BtsIMutI CAGTG 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 122, 497
CviAII CATG 4 cut(s) 180, 309, 392, 518
CviJI RGCY 6 cut(s) 10, 135, 294, 324, 402, 540
CviKI_1 RGCY 6 cut(s) 10, 135, 294, 324, 402, 540
CviQI GTAC 2 cut(s) 122, 497
DdeI CTNAG 1 cut(s) 105
DpnI GATC 4 cut(s) 6, 117, 330, 467
DpnII GATC 4 cut(s) 4, 115, 328, 465
Eam1104I CTCTTC 1 cut(s) 457
EarI CTCTTC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 128
FaeI CATG 4 cut(s) 183, 312, 395, 521
FaiI YATR 8 cut(s) 181, 200, 310, 386, 393, 461, 505, 519
FaqI GGGAC 1 cut(s) 227
FatI CATG 4 cut(s) 179, 308, 391, 517
Fnu4HI GCNGC 4 cut(s) 78, 81, 191, 403
FokI GGATG 3 cut(s) 18, 152, 425
Fsp4HI GCNGC 4 cut(s) 78, 81, 191, 403
FspBI CTAG 1 cut(s) 132
GluI GCNGC 4 cut(s) 78, 81, 191, 403
Hin1II CATG 4 cut(s) 183, 312, 395, 521
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 140
HpyCH4IV ACGT 2 cut(s) 27, 431
HpyCH4V TGCA 5 cut(s) 77, 144, 205, 397, 417
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 2 cut(s) 27, 431
Hsp92II CATG 4 cut(s) 183, 312, 395, 521
Kzo9I GATC 4 cut(s) 4, 115, 328, 465
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 6 cut(s) 105, 132, 161, 258, 304, 373
Lsp1109I GCAGC 4 cut(s) 89, 92, 177, 389
LweI GCATC 2 cut(s) 192, 404
MaeI CTAG 1 cut(s) 132
MaeII ACGT 2 cut(s) 27, 431
MaeIII GTNAC 5 cut(s) 23, 302, 362, 484, 529
MalI GATC 4 cut(s) 6, 117, 330, 467
MboI GATC 4 cut(s) 4, 115, 328, 465
MboII GAAGA 2 cut(s) 80, 444
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 5 cut(s) 158, 256, 352, 490, 561
MnlI CCTC 3 cut(s) 179, 347, 556
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 482
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 4 cut(s) 4, 115, 328, 465
NlaIII CATG 4 cut(s) 183, 312, 395, 521
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 3 cut(s) 23, 484, 529
NspI RCATGY 2 cut(s) 312, 521
PciI ACATGT 2 cut(s) 308, 517
PctI GAATGC 1 cut(s) 286
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 4 cut(s) 79, 82, 192, 404
PscI ACATGT 2 cut(s) 308, 517
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 2 cut(s) 123, 498
RsaNI GTAC 2 cut(s) 122, 497
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 4 cut(s) 78, 81, 191, 403
Sau3AI GATC 4 cut(s) 4, 115, 328, 465
Sau96I GGNCC 1 cut(s) 128
ScaI AGTACT 1 cut(s) 123
SduI GDGCHC 1 cut(s) 349
SfaNI GCATC 2 cut(s) 192, 404
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 482
Sse9I AATT 5 cut(s) 158, 256, 352, 490, 561
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 140
TaiI ACGT 2 cut(s) 30, 434
TaqI TCGA 2 cut(s) 327, 536
TasI AATT 5 cut(s) 158, 256, 352, 490, 561
TatI WGTACW 1 cut(s) 121
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 155
TseFI GTSAC 3 cut(s) 23, 484, 529
TseI GCWGC 4 cut(s) 77, 80, 190, 402
Tsp45I GTSAC 3 cut(s) 23, 484, 529
TspDTI ATGAA 1 cut(s) 154
TspRI CASTG 1 cut(s) 155
Van91I CCANNNNNTGG 1 cut(s) 125
VpaK11BI GGWCC 1 cut(s) 128
XceI RCATGY 2 cut(s) 312, 521
XspI CTAG 1 cut(s) 132
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.