Rroxscaffold_4G00293940

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000226
Physical Location & Seq
Reverse (-)
14140241 .. 14142464
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293940.1

Sequence Viewer

Length: 1929 bp
ATGGATGGCCGCTACTACAGCTGTGACCCATGTGACGTTCTCCTTCACGTCAAATGTGCTTTCAGTTTCAGAAACATAGACTGTATACTACATTTCAGTCACCAGCATGTATTGACCCTGAGTACTGAAAATCAATCTGCAGAGGGACCACCTGTCTCCTGTACTGGGTGCTTAAAGCAAGTGCTTGGTCCTAGATACATTTGCAAAATGTTTGCCGGGAGGGAGAGACACTTTTCCGTTTTTGGCAAAATTCCTTACGGGATGGAGAGAAGCTGCTCATCCATTGTTCTGCATCAATCTTGTGCGAAGCTAGATCGTGAGATCCAGCACCCGATGCACCGCCAACACGCACTTACTCTCAATCTAAATGGAGCCCGAGAATCCCACTGTGATGCTTGTGACAAAGATTGCAGCCGCAGATTCAGTTACAGTTGTTTCCGATGTGACTTCAACATTGACCGCGACTGTGCTTCTGAGAAAGGCTTTGAACATTTCAGTCACAACCATCCATTAATATTCAAGGAGCTGGGAGACAAAAAAAAAGAGTTTGTTCCATTAGTTATTTGCGATGCTTGCCAGGACCCAGTAGTTGGCCCTAGTTACACTTGCATCAATACCTACCTACGTCGCAAATGCTGCTTCAATCTCCACAAGTCATGTGCAGAGTTACCCGTTGAGATCCAGCACCCGTTGCACCATCAACACCCACTTCTTCTGCTCAATACAATTCCAATTCAAAAAATCAAAGATCCTTGCTCATGTAATGCCTGCAATCGACCTTACATTTACCCCAAGGACCAGGTTTGTAAAATCTGCTCTACGAGTGTTGGTAAGTGTCGTACTGTATATTATTGTCAGGAATGTTGCGGTTATGTTGCCCACACTACATGCGTATTCCAGAAAGAAGAAAACAAAGACAGTACCGTTAATACTAAAGAGGATGATTTTGAGTCTGGTGATGCCAGTGTGATCGAACACTTCAGTCATAAACATCCTTTAGTCGCTAATAAGAAGGTTTCGCAATGGAGAGTTCGTAGAAGAATGACTTGTCACGGTTGCATTCGACCCATCATGACTAAAGACTTCTACAGCTGTACAAAAAAAAGAAAAGAGTCTTGCTATTTCTTTCTCCACAAAACATGTGCCCGATTACCAGAAAAACTGATTCTCCCTTTGCTTGACCAACAGCAGTTCATACTCCACTCTCGGGCTCCTTCTATTGACGAGGTGTTTCAGTGTTATATGTGTGGTATCTTTCACCAAGGCTTTGTATACTGTTGTGCTCTGCCAAAGGGCGAAAAACCTGCTTACCTTGACCCTGAGTGCAGTATTTATTGGGAAAACAGAGATCTTAAACACGAGTCTCATGCTCACCGCCTCCTCCTCGACCGGGAGGACGTCCATTGCAGGGGTTGTGGTTCACAAATAATTTTCTGCTTCAGTTGTAAGAGATGCAATTTTCATCTTTGCATAGCCTGTGTTAGATTACCTCTTACTGCTGAGCACCGATACGACACGCATACTCTAAAGCTCACCTATGAAAGTATTAAAGACGAGCTAGGTGAATACTACTGTGAGATATGTGAAGGAAAAAGGGATCCAGCACATTGGTTCTACTGGTGCAAAGAGTGCGAGTTTGACTGTCATCCCCATTGCATTATAGGGAGGTATCCGCGAGTCAAGTTGGAGAGCACTTACAAGCACGACGCTCATGTCCAGCACCCCGTCACTCTTGTTAGCAAGTGGAAGAGCCCCATTCGGGGCGATAAGAGGGACAACATTCTTCCCTGTGAGAAGTGCGGTGAACTTTGCCAAGGATTAGTATTTGAATGCAGAGAGTGCAATATAAATTTCCATCGAGACGGATGTTGTGGAACTATAGATTCGGAAAGTTCTCGCAGGTCTCCTCAGATCGAAGAGCTAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

642

Amino Acids

74.4

Weight (kDa)

8.02

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 112 - 157 1.1e-07 C1 domain
C1_2 PF03107 327 - 382 1.6e-06 C1 domain
C1_2 PF03107 503 - 553 2.5e-07 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1712
AatII GACGTC 1 cut(s) 1401
Acc36I ACCTGC 2 cut(s) 1312, 1890
AccB7I CCANNNNNTGG 1 cut(s) 590
AccI GTMKAC 2 cut(s) 85, 1272
AccII CGCG 2 cut(s) 462, 1675
AciI CCGC 8 cut(s) 10, 340, 415, 460, 867, 1375, 1673, 1800
AclWI GGATC 5 cut(s) 316, 673, 743, 1592, 1605
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 2 cut(s) 249, 1849
AcuI CTGAAG 2 cut(s) 964, 1423
AcyI GRCGYC 1 cut(s) 1398
AfaI GTAC 5 cut(s) 124, 163, 841, 922, 1096
AfiI CCNNNNNNNGG 7 cut(s) 165, 590, 1207, 1390, 1408, 1759, 1760
AflIII ACRYGT 1 cut(s) 1139
AgsI TTSAA 6 cut(s) 451, 488, 520, 643, 737, 1829
AhdI GACNNNNNGTC 1 cut(s) 152
AjiI CACGTC 1 cut(s) 49
AjnI CCWGG 2 cut(s) 576, 798
AluBI AGCT 8 cut(s) 21, 273, 310, 526, 1092, 1531, 1558, 1921
AluI AGCT 8 cut(s) 21, 273, 310, 526, 1092, 1531, 1558, 1921
Alw21I GWGCWC 3 cut(s) 1285, 1506, 1694
Alw26I GTCTC 6 cut(s) 160, 220, 525, 1368, 1854, 1908
AlwI GGATC 5 cut(s) 316, 673, 743, 1592, 1605
Ama87I CYCGRG 2 cut(s) 375, 1206
AoxI GGCC 2 cut(s) 7, 592
ApeKI GCWGC 3 cut(s) 273, 411, 636
ApoI RAATTY 2 cut(s) 249, 1849
AseI ATTAAT 1 cut(s) 512
AspS9I GGNCC 5 cut(s) 146, 188, 580, 593, 796
AsuC2I CCSGG 2 cut(s) 217, 1391
AsuHPI GGTGA 7 cut(s) 92, 968, 1250, 1364, 1525, 1574, 1814
AvaI CYCGRG 2 cut(s) 375, 1206
AvaII GGWCC 4 cut(s) 146, 188, 580, 796
BaeGI GKGCMC 1 cut(s) 1147
BamHI GGATCC 1 cut(s) 1597
BanII GRGCYC 3 cut(s) 376, 1213, 1754
BauI CACGAG 1 cut(s) 1358
Bbv12I GWGCWC 3 cut(s) 1285, 1506, 1694
BbvI GCAGC 3 cut(s) 260, 423, 623
BccI CCATC 5 cut(s) 256, 513, 705, 1076, 1863
BcgI CGANNNNNNTGC 4 cut(s) 1286, 1320, 1349, 1383
BciT130I CCWGG 2 cut(s) 578, 800
BciVI GTATCC 1 cut(s) 1680
BcnI CCSGG 2 cut(s) 217, 1391
BcoDI GTCTC 6 cut(s) 160, 220, 525, 1368, 1854, 1908
BfaI CTAG 4 cut(s) 192, 311, 597, 1559
BfmI CTRYAG 4 cut(s) 16, 138, 1087, 1878
BfuAI ACCTGC 2 cut(s) 1312, 1890
BfuI GTATCC 1 cut(s) 1680
BglII AGATCT 1 cut(s) 1348
BisI GCNGC 5 cut(s) 10, 274, 412, 415, 637
BlpI GCTNAGC 1 cut(s) 1500
BlsI GCNGC 5 cut(s) 11, 275, 413, 416, 638
BmcAI AGTACT 1 cut(s) 124
Bme1390I CCNGG 4 cut(s) 217, 578, 800, 1391
Bme18I GGWCC 4 cut(s) 146, 188, 580, 796
BmeRI GACNNNNNGTC 1 cut(s) 152
BmeT110I CYCGRG 2 cut(s) 375, 1206
BmgBI CACGTC 1 cut(s) 49
BmgT120I GGNCC 5 cut(s) 146, 188, 580, 593, 796
BmiI GGNNCC 5 cut(s) 147, 373, 582, 1212, 1599
BmrFI CCNGG 4 cut(s) 217, 578, 800, 1391
BmrI ACTGGG 2 cut(s) 174, 578
BmsI GCATC 7 cut(s) 301, 324, 382, 559, 618, 949, 1442
BmuI ACTGGG 2 cut(s) 174, 578
Bpu1102I GCTNAGC 1 cut(s) 1500
BpuMI CCSGG 2 cut(s) 217, 1391
BsaHI GRCGYC 1 cut(s) 1398
BsaI GGTCTC 1 cut(s) 1908
BsaJI CCNNGG 3 cut(s) 792, 1261, 1813
BsaXI ACNNNNNCTCC 4 cut(s) 1018, 1048, 1152, 1182
Bsc4I CCNNNNNNNGG 7 cut(s) 165, 590, 1207, 1390, 1408, 1759, 1760
Bse1I ACTGG 4 cut(s) 169, 584, 963, 1622
Bse3DI GCAATG 3 cut(s) 1028, 1402, 1651
BseBI CCWGG 2 cut(s) 578, 800
BseDI CCNNGG 3 cut(s) 792, 1261, 1813
BseGI GGATG 8 cut(s) 10, 267, 278, 505, 946, 991, 1645, 1871
BseLI CCNNNNNNNGG 7 cut(s) 165, 590, 1207, 1390, 1408, 1759, 1760
BseMI GCAATG 3 cut(s) 1028, 1402, 1651
BseMII CTCAG 5 cut(s) 110, 465, 1311, 1491, 1922
BseNI ACTGG 4 cut(s) 169, 584, 963, 1622
BseRI GAGGAG 3 cut(s) 1370, 1373, 1896
BseSI GKGCMC 1 cut(s) 1147
BseXI GCAGC 3 cut(s) 260, 423, 623
BseYI CCCAGC 1 cut(s) 526
BsgI GTGCAG 2 cut(s) 681, 1345
Bsh1236I CGCG 2 cut(s) 462, 1675
Bsh1285I CGRYCG 1 cut(s) 1390
BshFI GGCC 2 cut(s) 9, 594
BsiEI CGRYCG 1 cut(s) 1390
BsiHKAI GWGCWC 3 cut(s) 1285, 1506, 1694
BsiHKCI CYCGRG 2 cut(s) 375, 1206
BsiSI CCGG 2 cut(s) 216, 1390
BslFI GGGAC 2 cut(s) 159, 1787
BslI CCNNNNNNNGG 7 cut(s) 165, 590, 1207, 1390, 1408, 1759, 1760
BsmAI GTCTC 6 cut(s) 160, 220, 525, 1368, 1854, 1908
BsmBI CGTCTC 1 cut(s) 1854
BsmFI GGGAC 2 cut(s) 159, 1787
BsmI GAATGC 2 cut(s) 1059, 1835
BsnI GGCC 2 cut(s) 9, 594
Bso31I GGTCTC 1 cut(s) 1908
BsoBI CYCGRG 2 cut(s) 375, 1206
Bsp1286I GDGCHC 7 cut(s) 376, 1147, 1213, 1285, 1506, 1694, 1754
Bsp1407I TGTACA 1 cut(s) 1094
Bsp143I GATC 8 cut(s) 313, 321, 678, 748, 969, 1348, 1597, 1911
Bsp1720I GCTNAGC 1 cut(s) 1500
BspACI CCGC 8 cut(s) 10, 340, 415, 460, 867, 1375, 1673, 1800
BspANI GGCC 2 cut(s) 9, 594
BspCNI CTCAG 5 cut(s) 111, 466, 1312, 1492, 1921
BspFNI CGCG 2 cut(s) 462, 1675
BspHI TCATGA 1 cut(s) 1071
BspLI GGNNCC 5 cut(s) 147, 373, 582, 1212, 1599
BspMAI CTGCAG 1 cut(s) 142
BspMI ACCTGC 2 cut(s) 1312, 1890
BspPI GGATC 5 cut(s) 316, 673, 743, 1592, 1605
BspQI GCTCTTC 2 cut(s) 1742, 1911
BspTNI GGTCTC 1 cut(s) 1908
BsrDI GCAATG 3 cut(s) 1028, 1402, 1651
BsrGI TGTACA 1 cut(s) 1094
BsrI ACTGG 4 cut(s) 169, 584, 963, 1622
BssECI CCNNGG 3 cut(s) 792, 1261, 1813
BssMI GATC 8 cut(s) 313, 321, 678, 748, 969, 1348, 1597, 1911
BssNAI GTATAC 2 cut(s) 86, 1273
BssNI GRCGYC 1 cut(s) 1398
BssSI CACGAG 1 cut(s) 1358
BssT1I CCWWGG 3 cut(s) 792, 1261, 1813
Bst1107I GTATAC 2 cut(s) 86, 1273
Bst2BI CACGAG 1 cut(s) 1358
Bst2UI CCWGG 2 cut(s) 578, 800
Bst6I CTCTTC 2 cut(s) 1742, 1911
BstACI GRCGYC 1 cut(s) 1398
BstAPI GCANNNNNTGC 5 cut(s) 334, 636, 691, 1629, 1839
BstAUI TGTACA 1 cut(s) 1094
BstC8I GCNNGC 2 cut(s) 574, 769
BstDEI CTNAG 6 cut(s) 119, 474, 1320, 1500, 1908, 1922
BstF5I GGATG 8 cut(s) 10, 267, 278, 505, 946, 991, 1645, 1871
BstFNI CGCG 2 cut(s) 462, 1675
BstKTI GATC 8 cut(s) 316, 324, 681, 751, 972, 1351, 1600, 1914
BstMAI GTCTC 6 cut(s) 160, 220, 525, 1368, 1854, 1908
BstMBI GATC 8 cut(s) 313, 321, 678, 748, 969, 1348, 1597, 1911
BstMCI CGRYCG 1 cut(s) 1390
BstMWI GCNNNNNNNGC 7 cut(s) 18, 334, 573, 636, 691, 1629, 1839
BstNI CCWGG 2 cut(s) 578, 800
BstNSI RCATGY 3 cut(s) 110, 891, 1143
BstSCI CCNGG 4 cut(s) 215, 576, 798, 1389
BstSFI CTRYAG 4 cut(s) 16, 138, 1087, 1878
BstSLI GKGCMC 1 cut(s) 1147
BstUI CGCG 2 cut(s) 462, 1675
BstV1I GCAGC 3 cut(s) 260, 423, 623
BstX2I RGATCY 5 cut(s) 321, 678, 748, 1348, 1597
BstXI CCANNNNNNTGG 1 cut(s) 1608
BstYI RGATCY 5 cut(s) 321, 678, 748, 1348, 1597
BstZ17I GTATAC 2 cut(s) 86, 1273
BsuI GTATCC 1 cut(s) 1680
BsuRI GGCC 2 cut(s) 9, 594
BtgZI GCGATG 1 cut(s) 582
BtrI CACGTC 1 cut(s) 49
BtsCI GGATG 8 cut(s) 10, 267, 278, 505, 946, 991, 1645, 1871
BtsIMutI CAGTG 3 cut(s) 385, 970, 1241
BveI ACCTGC 2 cut(s) 1312, 1890
Cac8I GCNNGC 2 cut(s) 574, 769
CciI TCATGA 1 cut(s) 1071
Cfr13I GGNCC 5 cut(s) 146, 188, 580, 593, 796
CseI GACGC 1 cut(s) 1715
CsiI ACCWGGT 1 cut(s) 798
Csp6I GTAC 5 cut(s) 123, 162, 840, 921, 1095
CviAII CATG 9 cut(s) 30, 107, 657, 759, 888, 1072, 1140, 1367, 1712
CviQI GTAC 5 cut(s) 123, 162, 840, 921, 1095
DdeI CTNAG 6 cut(s) 119, 474, 1320, 1500, 1908, 1922
DpnI GATC 8 cut(s) 315, 323, 680, 750, 971, 1350, 1599, 1913
DpnII GATC 8 cut(s) 313, 321, 678, 748, 969, 1348, 1597, 1911
DrdI GACNNNNNNGTC 1 cut(s) 1712
DriI GACNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 1712
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 2 cut(s) 1742, 1911
Eam1105I GACNNNNNGTC 1 cut(s) 152
EarI CTCTTC 2 cut(s) 1742, 1911
Eco130I CCWWGG 3 cut(s) 792, 1261, 1813
Eco24I GRGCYC 3 cut(s) 376, 1213, 1754
Eco31I GGTCTC 1 cut(s) 1908
Eco47I GGWCC 4 cut(s) 146, 188, 580, 796
Eco57I CTGAAG 2 cut(s) 964, 1423
Eco88I CYCGRG 2 cut(s) 375, 1206
EcoO109I RGGNCCY 1 cut(s) 580
EcoRII CCWGG 2 cut(s) 576, 798
EcoT14I CCWWGG 3 cut(s) 792, 1261, 1813
EcoT38I GRGCYC 3 cut(s) 376, 1213, 1754
ErhI CCWWGG 3 cut(s) 792, 1261, 1813
Esp3I CGTCTC 1 cut(s) 1854
FaeI CATG 9 cut(s) 33, 110, 660, 762, 891, 1075, 1143, 1370, 1715
FalI AAGNNNNNCTT 2 cut(s) 1030, 1062
FaqI GGGAC 2 cut(s) 159, 1787
FatI CATG 9 cut(s) 29, 106, 656, 758, 887, 1071, 1139, 1366, 1711
FblI GTMKAC 2 cut(s) 85, 1272
Fnu4HI GCNGC 5 cut(s) 10, 274, 412, 415, 637
FokI GGATG 8 cut(s) 17, 265, 274, 492, 953, 978, 1632, 1878
FriOI GRGCYC 3 cut(s) 376, 1213, 1754
Fsp4HI GCNGC 5 cut(s) 10, 274, 412, 415, 637
FspBI CTAG 4 cut(s) 192, 311, 597, 1559
GluI GCNGC 5 cut(s) 10, 274, 412, 415, 637
GsaI CCCAGC 1 cut(s) 530
HaeIII GGCC 2 cut(s) 9, 594
HapII CCGG 2 cut(s) 216, 1390
HgaI GACGC 1 cut(s) 1715
Hin1I GRCGYC 1 cut(s) 1398
Hin1II CATG 9 cut(s) 33, 110, 660, 762, 891, 1075, 1143, 1370, 1715
HinfI GANTC 8 cut(s) 380, 420, 950, 1112, 1165, 1361, 1677, 1883
HpaII CCGG 2 cut(s) 216, 1390
HphI GGTGA 7 cut(s) 92, 968, 1250, 1364, 1525, 1574, 1814
Hpy166II GTNNAC 4 cut(s) 86, 1273, 1421, 1805
Hpy188I TCNGA 5 cut(s) 71, 440, 475, 1888, 1911
Hpy188III TCNNGA 5 cut(s) 317, 857, 898, 1072, 1859
Hpy8I GTNNAC 4 cut(s) 86, 1273, 1421, 1805
Hpy99I CGWCG 2 cut(s) 630, 1709
HpyAV CCTTC 4 cut(s) 53, 1006, 1224, 1580
HpyCH4IV ACGT 4 cut(s) 36, 48, 625, 1398
HpyF10VI GCNNNNNNNGC 7 cut(s) 18, 334, 573, 636, 691, 1629, 1839
HpyF3I CTNAG 6 cut(s) 119, 474, 1320, 1500, 1908, 1922
HpySE526I ACGT 4 cut(s) 36, 48, 625, 1398
Hsp92I GRCGYC 1 cut(s) 1398
Hsp92II CATG 9 cut(s) 33, 110, 660, 762, 891, 1075, 1143, 1370, 1715
Kzo9I GATC 8 cut(s) 313, 321, 678, 748, 969, 1348, 1597, 1911
LguI GCTCTTC 2 cut(s) 1742, 1911
LmnI GCTCC 3 cut(s) 371, 523, 1216
Lsp1109I GCAGC 3 cut(s) 260, 423, 623
LweI GCATC 7 cut(s) 301, 324, 382, 559, 618, 949, 1442
MabI ACCWGGT 1 cut(s) 798
MaeI CTAG 4 cut(s) 192, 311, 597, 1559
MaeII ACGT 4 cut(s) 36, 48, 625, 1398
MalI GATC 8 cut(s) 315, 323, 680, 750, 971, 1350, 1599, 1913
MboI GATC 8 cut(s) 313, 321, 678, 748, 969, 1348, 1597, 1911
MboII GAAGA 6 cut(s) 704, 917, 1050, 1759, 1775, 1928
MflI RGATCY 5 cut(s) 321, 678, 748, 1348, 1597
MhlI GDGCHC 7 cut(s) 376, 1147, 1213, 1285, 1506, 1694, 1754
MluCI AATT 6 cut(s) 249, 726, 732, 1428, 1456, 1849
MlyI GAGTC 4 cut(s) 959, 1121, 1370, 1686
MmeI TCCRAC 1 cut(s) 1665
MseI TTAA 6 cut(s) 173, 512, 927, 1353, 1548, 1927
MslI CAYNNNNRTG 2 cut(s) 105, 390
MspA1I CMGCKG 2 cut(s) 21, 1092
MspI CCGG 2 cut(s) 216, 1390
MspR9I CCNGG 4 cut(s) 217, 578, 800, 1391
Mva1269I GAATGC 2 cut(s) 1059, 1835
MvaI CCWGG 2 cut(s) 578, 800
MvnI CGCG 2 cut(s) 462, 1675
MwoI GCNNNNNNNGC 7 cut(s) 18, 334, 573, 636, 691, 1629, 1839
NciI CCSGG 2 cut(s) 217, 1391
NdeII GATC 8 cut(s) 313, 321, 678, 748, 969, 1348, 1597, 1911
NlaIII CATG 9 cut(s) 33, 110, 660, 762, 891, 1075, 1143, 1370, 1715
NlaIV GGNNCC 5 cut(s) 147, 373, 582, 1212, 1599
NmuCI GTSAC 8 cut(s) 23, 32, 98, 398, 443, 497, 1049, 1726
NspI RCATGY 3 cut(s) 110, 891, 1143
PagI TCATGA 1 cut(s) 1071
PciI ACATGT 1 cut(s) 1139
PciSI GCTCTTC 2 cut(s) 1742, 1911
PctI GAATGC 2 cut(s) 1059, 1835
PfeI GAWTC 4 cut(s) 380, 420, 1165, 1883
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 5 cut(s) 11, 275, 413, 416, 638
PleI GAGTC 4 cut(s) 958, 1120, 1369, 1685
PpsI GAGTC 4 cut(s) 958, 1120, 1369, 1685
PpuMI RGGWCCY 1 cut(s) 580
PscI ACATGT 1 cut(s) 1139
PshBI ATTAAT 1 cut(s) 512
Psp5II RGGWCCY 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 576, 798
PspFI CCCAGC 1 cut(s) 526
PspGI CCWGG 2 cut(s) 576, 798
PspN4I GGNNCC 5 cut(s) 147, 373, 582, 1212, 1599
PspPI GGNCC 5 cut(s) 146, 188, 580, 593, 796
PspPPI RGGWCCY 1 cut(s) 580
PstI CTGCAG 1 cut(s) 142
PsuI RGATCY 5 cut(s) 321, 678, 748, 1348, 1597
PvuII CAGCTG 2 cut(s) 21, 1092
RsaI GTAC 5 cut(s) 124, 163, 841, 922, 1096
RsaNI GTAC 5 cut(s) 123, 162, 840, 921, 1095
RseI CAYNNNNRTG 2 cut(s) 105, 390
SapI GCTCTTC 2 cut(s) 1742, 1911
SaqAI TTAA 6 cut(s) 173, 512, 927, 1353, 1548, 1927
SatI GCNGC 5 cut(s) 10, 274, 412, 415, 637
Sau3AI GATC 8 cut(s) 313, 321, 678, 748, 969, 1348, 1597, 1911
Sau96I GGNCC 5 cut(s) 146, 188, 580, 593, 796
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 4 cut(s) 959, 1121, 1370, 1686
ScrFI CCNGG 4 cut(s) 217, 578, 800, 1391
SduI GDGCHC 7 cut(s) 376, 1147, 1213, 1285, 1506, 1694, 1754
SexAI ACCWGGT 1 cut(s) 798
SfaNI GCATC 7 cut(s) 301, 324, 382, 559, 618, 949, 1442
SfcI CTRYAG 4 cut(s) 16, 138, 1087, 1878
SinI GGWCC 4 cut(s) 146, 188, 580, 796
SmiMI CAYNNNNRTG 2 cut(s) 105, 390
Sse9I AATT 6 cut(s) 249, 726, 732, 1428, 1456, 1849
SsiI CCGC 8 cut(s) 10, 340, 415, 460, 867, 1375, 1673, 1800
SspI AATATT 1 cut(s) 516
SspMI CTAG 4 cut(s) 192, 311, 597, 1559
StyD4I CCNGG 4 cut(s) 215, 576, 798, 1389
StyI CCWWGG 3 cut(s) 792, 1261, 1813
TaiI ACGT 4 cut(s) 39, 51, 628, 1401
TaqI TCGA 6 cut(s) 775, 972, 1063, 1386, 1858, 1914
TasI AATT 6 cut(s) 249, 726, 732, 1428, 1456, 1849
TatI WGTACW 3 cut(s) 122, 161, 1094
TauI GCSGC 2 cut(s) 12, 417
TfiI GAWTC 4 cut(s) 380, 420, 1165, 1883
Tru1I TTAA 6 cut(s) 173, 512, 927, 1353, 1548, 1927
Tru9I TTAA 6 cut(s) 173, 512, 927, 1353, 1548, 1927
TscAI CASTG 3 cut(s) 392, 970, 1241
TseFI GTSAC 8 cut(s) 23, 32, 98, 398, 443, 497, 1049, 1726
TseI GCWGC 3 cut(s) 273, 411, 636
Tsp45I GTSAC 8 cut(s) 23, 32, 98, 398, 443, 497, 1049, 1726
TspDTI ATGAA 3 cut(s) 1183, 1451, 1554
TspGWI ACGGA 2 cut(s) 226, 1878
TspRI CASTG 3 cut(s) 392, 970, 1241
Van91I CCANNNNNTGG 1 cut(s) 590
VpaK11BI GGWCC 4 cut(s) 146, 188, 580, 796
VspI ATTAAT 1 cut(s) 512
XapI RAATTY 2 cut(s) 249, 1849
XceI RCATGY 3 cut(s) 110, 891, 1143
XmiI GTMKAC 2 cut(s) 85, 1272
XspI CTAG 4 cut(s) 192, 311, 597, 1559
ZraI GACGTC 1 cut(s) 1399
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.