C1 domain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 112, 1176 |
| AccB1I | GGYRCC | 2 cut(s) | 57, 519 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 74, 469 |
| AccI | GTMKAC | 1 cut(s) | 441 |
| AccII | CGCG | 3 cut(s) | 157, 501, 982 |
| AciI | CCGC | 7 cut(s) | 155, 980, 1024, 1144, 1185, 1390, 1445 |
| AclWI | GGATC | 2 cut(s) | 59, 1364 |
| AcsI | RAATTY | 1 cut(s) | 862 |
| AcuI | CTGAAG | 2 cut(s) | 739, 1073 |
| AcyI | GRCGYC | 2 cut(s) | 109, 1173 |
| AfaI | GTAC | 2 cut(s) | 228, 425 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 74, 469, 1586 |
| AflIII | ACRYGT | 1 cut(s) | 404 |
| AgsI | TTSAA | 6 cut(s) | 127, 204, 295, 554, 731, 1601 |
| AjnI | CCWGG | 1 cut(s) | 374 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 15, 47 |
| AluBI | AGCT | 6 cut(s) | 151, 538, 876, 1306, 1333, 1456 |
| AluI | AGCT | 6 cut(s) | 151, 538, 876, 1306, 1333, 1456 |
| Alw21I | GWGCWC | 2 cut(s) | 922, 1466 |
| Alw26I | GTCTC | 3 cut(s) | 1539, 1655, 1680 |
| AlwI | GGATC | 2 cut(s) | 59, 1364 |
| Ama87I | CYCGRG | 1 cut(s) | 1457 |
| AoxI | GGCC | 1 cut(s) | 76 |
| ApeKI | GCWGC | 2 cut(s) | 1182, 1392 |
| ApoI | RAATTY | 1 cut(s) | 862 |
| AspS9I | GGNCC | 3 cut(s) | 35, 77, 472 |
| AsuHPI | GGTGA | 4 cut(s) | 355, 947, 1133, 1492 |
| AvaI | CYCGRG | 1 cut(s) | 1457 |
| AvaII | GGWCC | 2 cut(s) | 35, 472 |
| AxyI | CCTNAGG | 1 cut(s) | 1690 |
| BaeGI | GKGCMC | 1 cut(s) | 522 |
| BanI | GGYRCC | 2 cut(s) | 57, 519 |
| BbsI | GAAGAC | 2 cut(s) | 561, 1691 |
| Bbv12I | GWGCWC | 2 cut(s) | 922, 1466 |
| BbvI | GCAGC | 2 cut(s) | 1194, 1379 |
| BccI | CCATC | 4 cut(s) | 47, 854, 1245, 1302 |
| BceAI | ACGGC | 1 cut(s) | 1015 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 509, 543, 632, 666 |
| BciT130I | CCWGG | 1 cut(s) | 376 |
| BciVI | GTATCC | 2 cut(s) | 1452, 1634 |
| BclI | TGATCA | 1 cut(s) | 790 |
| BcoDI | GTCTC | 3 cut(s) | 1539, 1655, 1680 |
| BfaI | CTAG | 2 cut(s) | 81, 1317 |
| BfmI | CTRYAG | 2 cut(s) | 39, 451 |
| BfuI | GTATCC | 2 cut(s) | 1452, 1634 |
| BisI | GCNGC | 3 cut(s) | 1024, 1183, 1393 |
| BlsI | GCNGC | 3 cut(s) | 1025, 1184, 1394 |
| BmcAI | AGTACT | 1 cut(s) | 425 |
| Bme1390I | CCNGG | 1 cut(s) | 376 |
| Bme18I | GGWCC | 2 cut(s) | 35, 472 |
| BmeT110I | CYCGRG | 1 cut(s) | 1457 |
| BmgT120I | GGNCC | 3 cut(s) | 35, 77, 472 |
| BmiI | GGNNCC | 4 cut(s) | 59, 316, 521, 548 |
| BmrFI | CCNGG | 1 cut(s) | 376 |
| BmsI | GCATC | 7 cut(s) | 102, 364, 580, 727, 846, 1217, 1468 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1667 |
| BpiI | GAAGAC | 2 cut(s) | 561, 1691 |
| BpmI | CTGGAG | 1 cut(s) | 448 |
| BpuEI | CTTGAG | 2 cut(s) | 518, 1286 |
| BsaHI | GRCGYC | 2 cut(s) | 109, 1173 |
| BsaJI | CCNNGG | 2 cut(s) | 374, 1036 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 74, 469, 1586 |
| Bse1I | ACTGG | 2 cut(s) | 68, 431 |
| Bse21I | CCTNAGG | 1 cut(s) | 1690 |
| Bse3DI | GCAATG | 3 cut(s) | 657, 1402, 1423 |
| BseBI | CCWGG | 1 cut(s) | 376 |
| BseDI | CCNNGG | 2 cut(s) | 374, 1036 |
| BseGI | GGATG | 3 cut(s) | 837, 1294, 1643 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 74, 469, 1586 |
| BseMI | GCAATG | 3 cut(s) | 657, 1402, 1423 |
| BseMII | CTCAG | 1 cut(s) | 935 |
| BseNI | ACTGG | 2 cut(s) | 68, 431 |
| BseRI | GAGGAG | 3 cut(s) | 965, 1139, 1142 |
| BseSI | GKGCMC | 1 cut(s) | 522 |
| BseXI | GCAGC | 2 cut(s) | 1194, 1379 |
| BseYI | CCCAGC | 1 cut(s) | 1333 |
| BsgI | GTGCAG | 1 cut(s) | 165 |
| Bsh1236I | CGCG | 3 cut(s) | 157, 501, 982 |
| BshFI | GGCC | 1 cut(s) | 78 |
| BshNI | GGYRCC | 2 cut(s) | 57, 519 |
| BsiHKAI | GWGCWC | 2 cut(s) | 922, 1466 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1457 |
| BslFI | GGGAC | 1 cut(s) | 1663 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 74, 469, 1586 |
| BsmAI | GTCTC | 3 cut(s) | 1539, 1655, 1680 |
| BsmFI | GGGAC | 1 cut(s) | 1663 |
| BsnI | GGCC | 1 cut(s) | 78 |
| BsoBI | CYCGRG | 1 cut(s) | 1457 |
| Bsp1286I | GDGCHC | 3 cut(s) | 522, 922, 1466 |
| Bsp143I | GATC | 5 cut(s) | 64, 301, 790, 1084, 1369 |
| BspACI | CCGC | 7 cut(s) | 155, 980, 1024, 1144, 1185, 1390, 1445 |
| BspANI | GGCC | 1 cut(s) | 78 |
| BspCNI | CTCAG | 1 cut(s) | 934 |
| BspFNI | CGCG | 3 cut(s) | 157, 501, 982 |
| BspLI | GGNNCC | 4 cut(s) | 59, 316, 521, 548 |
| BspPI | GGATC | 2 cut(s) | 59, 1364 |
| BspQI | GCTCTTC | 1 cut(s) | 6 |
| BspT107I | GGYRCC | 2 cut(s) | 57, 519 |
| BsrDI | GCAATG | 3 cut(s) | 657, 1402, 1423 |
| BsrI | ACTGG | 2 cut(s) | 68, 431 |
| BssECI | CCNNGG | 2 cut(s) | 374, 1036 |
| BssMI | GATC | 5 cut(s) | 64, 301, 790, 1084, 1369 |
| BssNI | GRCGYC | 2 cut(s) | 109, 1173 |
| BssT1I | CCWWGG | 1 cut(s) | 1036 |
| Bst2UI | CCWGG | 1 cut(s) | 376 |
| Bst4CI | ACNGT | 7 cut(s) | 182, 278, 367, 439, 485, 524, 1550 |
| Bst6I | CTCTTC | 1 cut(s) | 6 |
| BstACI | GRCGYC | 2 cut(s) | 109, 1173 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 175, 1251 |
| BstC8I | GCNNGC | 2 cut(s) | 247, 664 |
| BstDEI | CTNAG | 2 cut(s) | 921, 1690 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1584 |
| BstF5I | GGATG | 3 cut(s) | 837, 1294, 1643 |
| BstFNI | CGCG | 3 cut(s) | 157, 501, 982 |
| BstKTI | GATC | 5 cut(s) | 67, 304, 793, 1087, 1372 |
| BstMAI | GTCTC | 3 cut(s) | 1539, 1655, 1680 |
| BstMBI | GATC | 5 cut(s) | 64, 301, 790, 1084, 1369 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 120, 175, 659, 1251, 1453 |
| BstNI | CCWGG | 1 cut(s) | 376 |
| BstNSI | RCATGY | 2 cut(s) | 408, 666 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1667 |
| BstSCI | CCNGG | 1 cut(s) | 374 |
| BstSFI | CTRYAG | 2 cut(s) | 39, 451 |
| BstSLI | GKGCMC | 1 cut(s) | 522 |
| BstUI | CGCG | 3 cut(s) | 157, 501, 982 |
| BstV1I | GCAGC | 2 cut(s) | 1194, 1379 |
| BstV2I | GAAGAC | 2 cut(s) | 561, 1691 |
| BstX2I | RGATCY | 2 cut(s) | 64, 1369 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1380 |
| BstYI | RGATCY | 2 cut(s) | 64, 1369 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1690 |
| BsuI | GTATCC | 2 cut(s) | 1452, 1634 |
| BsuRI | GGCC | 1 cut(s) | 78 |
| BtgZI | GCGATG | 1 cut(s) | 512 |
| BtsCI | GGATG | 3 cut(s) | 837, 1294, 1643 |
| BtsIMutI | CAGTG | 3 cut(s) | 435, 1016, 1097 |
| Cac8I | GCNNGC | 2 cut(s) | 247, 664 |
| Cfr13I | GGNCC | 3 cut(s) | 35, 77, 472 |
| CseI | GACGC | 2 cut(s) | 445, 507 |
| Csp6I | GTAC | 2 cut(s) | 227, 424 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 583, 618 |
| CviAII | CATG | 9 cut(s) | 141, 175, 405, 632, 663, 1127, 1251, 1276, 1484 |
| CviQI | GTAC | 2 cut(s) | 227, 424 |
| DdeI | CTNAG | 2 cut(s) | 921, 1690 |
| DpnI | GATC | 5 cut(s) | 66, 303, 792, 1086, 1371 |
| DpnII | GATC | 5 cut(s) | 64, 301, 790, 1084, 1369 |
| Eam1104I | CTCTTC | 1 cut(s) | 6 |
| EarI | CTCTTC | 1 cut(s) | 6 |
| Eco130I | CCWWGG | 1 cut(s) | 1036 |
| Eco32I | GATATC | 1 cut(s) | 220 |
| Eco47I | GGWCC | 2 cut(s) | 35, 472 |
| Eco57I | CTGAAG | 2 cut(s) | 739, 1073 |
| Eco81I | CCTNAGG | 1 cut(s) | 1690 |
| Eco88I | CYCGRG | 1 cut(s) | 1457 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1584 |
| EcoRII | CCWGG | 1 cut(s) | 374 |
| EcoRV | GATATC | 1 cut(s) | 220 |
| EcoT14I | CCWWGG | 1 cut(s) | 1036 |
| ErhI | CCWWGG | 1 cut(s) | 1036 |
| FaeI | CATG | 9 cut(s) | 144, 178, 408, 635, 666, 1130, 1254, 1279, 1487 |
| FaqI | GGGAC | 1 cut(s) | 1663 |
| FatI | CATG | 9 cut(s) | 140, 174, 404, 631, 662, 1126, 1250, 1275, 1483 |
| FauI | CCCGC | 1 cut(s) | 987 |
| FauNDI | CATATG | 1 cut(s) | 715 |
| FbaI | TGATCA | 1 cut(s) | 790 |
| FblI | GTMKAC | 1 cut(s) | 441 |
| Fnu4HI | GCNGC | 3 cut(s) | 1024, 1183, 1393 |
| FokI | GGATG | 3 cut(s) | 824, 1281, 1650 |
| Fsp4HI | GCNGC | 3 cut(s) | 1024, 1183, 1393 |
| FspBI | CTAG | 2 cut(s) | 81, 1317 |
| GluI | GCNGC | 3 cut(s) | 1024, 1183, 1393 |
| GsaI | CCCAGC | 1 cut(s) | 1337 |
| GsuI | CTGGAG | 1 cut(s) | 448 |
| HaeIII | GGCC | 1 cut(s) | 78 |
| HgaI | GACGC | 2 cut(s) | 445, 507 |
| Hin1I | GRCGYC | 2 cut(s) | 109, 1173 |
| Hin1II | CATG | 9 cut(s) | 144, 178, 408, 635, 666, 1130, 1254, 1279, 1487 |
| HincII | GTYRAC | 3 cut(s) | 185, 676, 1490 |
| HindII | GTYRAC | 3 cut(s) | 185, 676, 1490 |
| HinfI | GANTC | 4 cut(s) | 264, 344, 884, 1130 |
| HphI | GGTGA | 4 cut(s) | 355, 947, 1133, 1492 |
| Hpy166II | GTNNAC | 7 cut(s) | 185, 363, 442, 676, 969, 1141, 1490 |
| Hpy188I | TCNGA | 3 cut(s) | 224, 842, 1198 |
| Hpy188III | TCNNGA | 5 cut(s) | 215, 686, 797, 1459, 1518 |
| Hpy8I | GTNNAC | 7 cut(s) | 185, 363, 442, 676, 969, 1141, 1490 |
| Hpy99I | CGWCG | 4 cut(s) | 111, 114, 501, 1292 |
| HpyAV | CCTTC | 5 cut(s) | 200, 373, 999, 1580, 1628 |
| HpyCH4III | ACNGT | 7 cut(s) | 182, 278, 367, 439, 485, 524, 1550 |
| HpyCH4IV | ACGT | 5 cut(s) | 109, 229, 411, 1137, 1173 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 120, 175, 659, 1251, 1453 |
| HpyF3I | CTNAG | 2 cut(s) | 921, 1690 |
| HpySE526I | ACGT | 5 cut(s) | 109, 229, 411, 1137, 1173 |
| Hsp92I | GRCGYC | 2 cut(s) | 109, 1173 |
| Hsp92II | CATG | 9 cut(s) | 144, 178, 408, 635, 666, 1130, 1254, 1279, 1487 |
| Ksp22I | TGATCA | 1 cut(s) | 790 |
| Kzo9I | GATC | 5 cut(s) | 64, 301, 790, 1084, 1369 |
| LguI | GCTCTTC | 1 cut(s) | 6 |
| LmnI | GCTCC | 3 cut(s) | 320, 596, 1461 |
| Lsp1109I | GCAGC | 2 cut(s) | 1194, 1379 |
| LweI | GCATC | 7 cut(s) | 102, 364, 580, 727, 846, 1217, 1468 |
| MaeI | CTAG | 2 cut(s) | 81, 1317 |
| MaeII | ACGT | 5 cut(s) | 109, 229, 411, 1137, 1173 |
| MaeIII | GTNAC | 8 cut(s) | 83, 269, 407, 924, 1260, 1337, 1403, 1498 |
| MalI | GATC | 5 cut(s) | 66, 303, 792, 1086, 1371 |
| MboI | GATC | 5 cut(s) | 64, 301, 790, 1084, 1369 |
| MboII | GAAGA | 9 cut(s) | 23, 35, 362, 566, 815, 1079, 1337, 1547, 1696 |
| MfeI | CAATTG | 2 cut(s) | 319, 1051 |
| MflI | RGATCY | 2 cut(s) | 64, 1369 |
| MhlI | GDGCHC | 3 cut(s) | 522, 922, 1466 |
| MluCI | AATT | 6 cut(s) | 319, 509, 575, 862, 1051, 1231 |
| MlyI | GAGTC | 2 cut(s) | 338, 893 |
| MmeI | TCCRAC | 2 cut(s) | 865, 1397 |
| MseI | TTAA | 4 cut(s) | 6, 1032, 1122, 1257 |
| MslI | CAYNNNNRTG | 1 cut(s) | 798 |
| MspA1I | CMGCKG | 2 cut(s) | 1185, 1392 |
| MspR9I | CCNGG | 1 cut(s) | 376 |
| MunI | CAATTG | 2 cut(s) | 319, 1051 |
| MvaI | CCWGG | 1 cut(s) | 376 |
| MvnI | CGCG | 3 cut(s) | 157, 501, 982 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 120, 175, 659, 1251, 1453 |
| NdeI | CATATG | 1 cut(s) | 715 |
| NdeII | GATC | 5 cut(s) | 64, 301, 790, 1084, 1369 |
| NlaIII | CATG | 9 cut(s) | 144, 178, 408, 635, 666, 1130, 1254, 1279, 1487 |
| NlaIV | GGNNCC | 4 cut(s) | 59, 316, 521, 548 |
| NmeAIII | GCCGAG | 1 cut(s) | 86 |
| NmuCI | GTSAC | 3 cut(s) | 407, 1403, 1498 |
| NspI | RCATGY | 2 cut(s) | 408, 666 |
| PaeI | GCATGC | 1 cut(s) | 666 |
| PciI | ACATGT | 1 cut(s) | 404 |
| PciSI | GCTCTTC | 1 cut(s) | 6 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1320 |
| PfeI | GAWTC | 2 cut(s) | 264, 1130 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 74, 469 |
| PkrI | GCNGC | 3 cut(s) | 1025, 1184, 1394 |
| PleI | GAGTC | 2 cut(s) | 338, 892 |
| PpsI | GAGTC | 2 cut(s) | 338, 892 |
| PscI | ACATGT | 1 cut(s) | 404 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1667 |
| Psp6I | CCWGG | 1 cut(s) | 374 |
| PspFI | CCCAGC | 1 cut(s) | 1333 |
| PspGI | CCWGG | 1 cut(s) | 374 |
| PspN4I | GGNNCC | 4 cut(s) | 59, 316, 521, 548 |
| PspPI | GGNCC | 3 cut(s) | 35, 77, 472 |
| PsuI | RGATCY | 2 cut(s) | 64, 1369 |
| RsaI | GTAC | 2 cut(s) | 228, 425 |
| RsaNI | GTAC | 2 cut(s) | 227, 424 |
| RseI | CAYNNNNRTG | 1 cut(s) | 798 |
| SapI | GCTCTTC | 1 cut(s) | 6 |
| SaqAI | TTAA | 4 cut(s) | 6, 1032, 1122, 1257 |
| SatI | GCNGC | 3 cut(s) | 1024, 1183, 1393 |
| Sau3AI | GATC | 5 cut(s) | 64, 301, 790, 1084, 1369 |
| Sau96I | GGNCC | 3 cut(s) | 35, 77, 472 |
| ScaI | AGTACT | 1 cut(s) | 425 |
| SchI | GAGTC | 2 cut(s) | 338, 893 |
| ScrFI | CCNGG | 1 cut(s) | 376 |
| SduI | GDGCHC | 3 cut(s) | 522, 922, 1466 |
| SfaNI | GCATC | 7 cut(s) | 102, 364, 580, 727, 846, 1217, 1468 |
| SfcI | CTRYAG | 2 cut(s) | 39, 451 |
| SinI | GGWCC | 2 cut(s) | 35, 472 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 798 |
| SmlI | CTYRAG | 2 cut(s) | 533, 1301 |
| SmoI | CTYRAG | 2 cut(s) | 533, 1301 |
| SphI | GCATGC | 1 cut(s) | 666 |
| Sse9I | AATT | 6 cut(s) | 319, 509, 575, 862, 1051, 1231 |
| SsiI | CCGC | 7 cut(s) | 155, 980, 1024, 1144, 1185, 1390, 1445 |
| SspI | AATATT | 1 cut(s) | 820 |
| SspMI | CTAG | 2 cut(s) | 81, 1317 |
| StyD4I | CCNGG | 1 cut(s) | 374 |
| StyI | CCWWGG | 1 cut(s) | 1036 |
| TaaI | ACNGT | 7 cut(s) | 182, 278, 367, 439, 485, 524, 1550 |
| TaiI | ACGT | 5 cut(s) | 112, 232, 414, 1140, 1176 |
| TaqI | TCGA | 3 cut(s) | 281, 702, 1536 |
| TasI | AATT | 6 cut(s) | 319, 509, 575, 862, 1051, 1231 |
| TatI | WGTACW | 1 cut(s) | 423 |
| TauI | GCSGC | 1 cut(s) | 1026 |
| TfiI | GAWTC | 2 cut(s) | 264, 1130 |
| Tru1I | TTAA | 4 cut(s) | 6, 1032, 1122, 1257 |
| Tru9I | TTAA | 4 cut(s) | 6, 1032, 1122, 1257 |
| TscAI | CASTG | 3 cut(s) | 442, 1016, 1097 |
| TseFI | GTSAC | 3 cut(s) | 407, 1403, 1498 |
| TseI | GCWGC | 2 cut(s) | 1182, 1392 |
| Tsp45I | GTSAC | 3 cut(s) | 407, 1403, 1498 |
| TspDTI | ATGAA | 4 cut(s) | 480, 648, 816, 1143 |
| TspGWI | ACGGA | 1 cut(s) | 257 |
| TspRI | CASTG | 3 cut(s) | 442, 1016, 1097 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 74, 469 |
| VpaK11BI | GGWCC | 2 cut(s) | 35, 472 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1584 |
| XapI | RAATTY | 1 cut(s) | 862 |
| XceI | RCATGY | 2 cut(s) | 408, 666 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 382 |
| XmiI | GTMKAC | 1 cut(s) | 441 |
| XspI | CTAG | 2 cut(s) | 81, 1317 |
| ZraI | GACGTC | 2 cut(s) | 110, 1174 |
| ZrmI | AGTACT | 1 cut(s) | 425 |