Rmu_sc0020879.1_g000008

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0020879.1
OG0000226
Physical Location & Seq
Reverse (-)
21796 .. 22827
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0020879.1_g000008.1.cds

Sequence Viewer

Length: 1032 bp
atggatcagcttcaacatttcagtcacgtccatccattgatgtttaaggaaggggagcagaaaaacgaagatggtgcagcagcaagtccaccagttgattgttctaagtgtggggatccagtacttggtcctagctacagttgcaaccagtgttccgaattattcatcctccacaagtcatgtgcgttgctgccccgtatgatgcaccacccgatacaccgcaaacatctacttgttctcgtcccagataggactaattacatttgtgatatttgtggcaatgggcattccagctcattcggttacacatgtgagcaagatggcttcgatcttgacctccaatgtgctctcaatttgagtaacacaaaattcttggaacacttcagtcatcggcatgcactgatgtttatggaagaacccaaaagagaaagcaaggattcactagttgtttgtagtgggtgccgagagcaagtgattggtccaagctactgttgcagcctgttacaatgctactacactctccataagtcatgtgcagagctgccccgtgagatgcaccacccgaaacacgtcaaacatccacttgttctcttctcacatagagatcatcgttgtcatttttgtgacaaattgcgtaccaacatattctcttacacatgtgagcaatgtgacttcgagcttgacctccaatgtgcttccaatttgagtgacataaaatgcttggaacacttcagtcatgagcgtgcactgatgtttatggaagaacccaaaagaaaaagcaaggattcactagttgtttgtgatgggtgccgagagcaagtgtttggtccaagctattgttgcagccagtttcattgctactacactctccataagtcatgtacggagcttcccccagagtttcatcacccgatgcatatccaacatccacttattctaaacaaagatagactacgaaaataccagtgtgatgcgtgtaaccaagattgcagagacaggttcacttattataggaaaagatgttttgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

343

Amino Acids

39.98

Weight (kDa)

6.72

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 459, 807
AccB7I CCANNNNNTGG 1 cut(s) 125
AciI CCGC 1 cut(s) 220
AclWI GGATC 3 cut(s) 12, 110, 123
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 2 cut(s) 367, 715
AfaI GTAC 3 cut(s) 123, 637, 883
AfiI CCNNNNNNNGG 1 cut(s) 125
AflIII ACRYGT 3 cut(s) 308, 568, 656
AgsI TTSAA 1 cut(s) 14
AhlI ACTAGT 2 cut(s) 442, 790
AjiI CACGTC 2 cut(s) 28, 571
AluBI AGCT 8 cut(s) 10, 135, 294, 486, 541, 679, 834, 889
AluI AGCT 8 cut(s) 10, 135, 294, 486, 541, 679, 834, 889
Alw21I GWGCWC 2 cut(s) 349, 748
Alw26I GTCTC 1 cut(s) 987
Alw44I GTGCAC 1 cut(s) 744
AlwI GGATC 3 cut(s) 12, 110, 123
ApaLI GTGCAC 1 cut(s) 744
ApeKI GCWGC 6 cut(s) 77, 80, 190, 495, 541, 843
ApoI RAATTY 1 cut(s) 368
AspS9I GGNCC 3 cut(s) 128, 479, 827
AsuHPI GGTGA 1 cut(s) 899
AvaII GGWCC 3 cut(s) 128, 479, 827
BaeGI GKGCMC 1 cut(s) 748
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 459, 807
Bbv12I GWGCWC 2 cut(s) 349, 748
BbvI GCAGC 6 cut(s) 89, 92, 177, 507, 528, 855
BccI CCATC 4 cut(s) 39, 65, 314, 797
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcoDI GTCTC 1 cut(s) 987
BcuI ACTAGT 2 cut(s) 442, 790
BfaI CTAG 3 cut(s) 132, 443, 791
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
BlsI GCNGC 6 cut(s) 79, 82, 192, 497, 543, 845
BmcAI AGTACT 1 cut(s) 123
Bme18I GGWCC 3 cut(s) 128, 479, 827
BmgBI CACGTC 2 cut(s) 28, 571
BmgT120I GGNCC 3 cut(s) 128, 479, 827
BmiI GGNNCC 3 cut(s) 117, 461, 809
BmsI GCATC 4 cut(s) 192, 543, 903, 961
BsaBI GATNNNNATC 1 cut(s) 917
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse1I ACTGG 5 cut(s) 92, 119, 148, 847, 964
Bse3DI GCAATG 3 cut(s) 286, 671, 853
Bse8I GATNNNNATC 1 cut(s) 917
BseGI GGATG 4 cut(s) 31, 165, 577, 925
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMI GCAATG 3 cut(s) 286, 671, 853
BseNI ACTGG 5 cut(s) 92, 119, 148, 847, 964
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 6 cut(s) 89, 92, 177, 507, 528, 855
BsgI GTGCAG 2 cut(s) 96, 555
BshNI GGYRCC 2 cut(s) 459, 807
BsiHKAI GWGCWC 2 cut(s) 349, 748
BslFI GGGAC 1 cut(s) 227
BslI CCNNNNNNNGG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 987
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 286
Bsp1286I GDGCHC 2 cut(s) 349, 748
Bsp143I GATC 4 cut(s) 4, 115, 328, 604
BspACI CCGC 1 cut(s) 220
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 117, 461, 809
BspPI GGATC 3 cut(s) 12, 110, 123
BspT107I GGYRCC 2 cut(s) 459, 807
BsrDI GCAATG 3 cut(s) 286, 671, 853
BsrI ACTGG 5 cut(s) 92, 119, 148, 847, 964
BssMI GATC 4 cut(s) 4, 115, 328, 604
Bst4CI ACNGT 2 cut(s) 140, 491
Bst6I CTCTTC 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 396, 744
BstDEI CTNAG 1 cut(s) 105
BstF5I GGATG 4 cut(s) 31, 165, 577, 925
BstKTI GATC 4 cut(s) 7, 118, 331, 607
BstMAI GTCTC 1 cut(s) 987
BstMBI GATC 4 cut(s) 4, 115, 328, 604
BstMWI GCNNNNNNNGC 3 cut(s) 141, 492, 840
BstNSI RCATGY 3 cut(s) 312, 398, 660
BstSFI CTRYAG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 6 cut(s) 89, 92, 177, 507, 528, 855
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtrI CACGTC 2 cut(s) 28, 571
BtsCI GGATG 4 cut(s) 31, 165, 577, 925
BtsIMutI CAGTG 4 cut(s) 155, 398, 746, 971
Cac8I GCNNGC 2 cut(s) 396, 744
CciI TCATGA 1 cut(s) 736
Cfr13I GGNCC 3 cut(s) 128, 479, 827
Csp6I GTAC 3 cut(s) 122, 636, 882
CviAII CATG 7 cut(s) 180, 309, 395, 531, 657, 737, 879
CviQI GTAC 3 cut(s) 122, 636, 882
DdeI CTNAG 1 cut(s) 105
DpnI GATC 4 cut(s) 6, 117, 330, 606
DpnII GATC 4 cut(s) 4, 115, 328, 604
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
Eco47I GGWCC 3 cut(s) 128, 479, 827
Eco57I CTGAAG 2 cut(s) 367, 715
EcoT22I ATGCAT 1 cut(s) 918
FaeI CATG 7 cut(s) 183, 312, 398, 534, 660, 740, 882
FaqI GGGAC 1 cut(s) 227
FatI CATG 7 cut(s) 179, 308, 394, 530, 656, 736, 878
Fnu4HI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
FokI GGATG 4 cut(s) 18, 152, 564, 912
Fsp4HI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
FspBI CTAG 3 cut(s) 132, 443, 791
GluI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
Hin1II CATG 7 cut(s) 183, 312, 398, 534, 660, 740, 882
HinfI GANTC 2 cut(s) 437, 785
HphI GGTGA 1 cut(s) 899
Hpy166II GTNNAC 3 cut(s) 89, 746, 1002
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 332, 737
Hpy8I GTNNAC 3 cut(s) 89, 746, 1002
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 140, 491
HpyCH4IV ACGT 2 cut(s) 27, 570
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 492, 840
HpyF3I CTNAG 1 cut(s) 105
HpySE526I ACGT 2 cut(s) 27, 570
Hsp92II CATG 7 cut(s) 183, 312, 398, 534, 660, 740, 882
Kzo9I GATC 4 cut(s) 4, 115, 328, 604
LmnI GCTCC 2 cut(s) 55, 886
Lsp1109I GCAGC 6 cut(s) 89, 92, 177, 507, 528, 855
LweI GCATC 4 cut(s) 192, 543, 903, 961
MaeI CTAG 3 cut(s) 132, 443, 791
MaeII ACGT 2 cut(s) 27, 570
MaeIII GTNAC 8 cut(s) 23, 302, 359, 501, 623, 668, 707, 977
MalI GATC 4 cut(s) 6, 117, 330, 606
MboI GATC 4 cut(s) 4, 115, 328, 604
MboII GAAGA 4 cut(s) 80, 425, 583, 773
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 2 cut(s) 349, 748
MluCI AATT 6 cut(s) 158, 256, 352, 368, 629, 700
MmeI TCCRAC 1 cut(s) 946
MnlI CCTC 3 cut(s) 179, 347, 695
Mph1103I ATGCAT 1 cut(s) 918
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 3 cut(s) 393, 621, 741
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 141, 492, 840
NdeII GATC 4 cut(s) 4, 115, 328, 604
NlaIII CATG 7 cut(s) 183, 312, 398, 534, 660, 740, 882
NlaIV GGNNCC 3 cut(s) 117, 461, 809
NmeAIII GCCGAG 2 cut(s) 488, 836
NmuCI GTSAC 4 cut(s) 23, 623, 668, 707
NsiI ATGCAT 1 cut(s) 918
NspI RCATGY 3 cut(s) 312, 398, 660
PaeI GCATGC 1 cut(s) 398
PagI TCATGA 1 cut(s) 736
PciI ACATGT 2 cut(s) 308, 656
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 437, 785
PflMI CCANNNNNTGG 1 cut(s) 125
PkrI GCNGC 6 cut(s) 79, 82, 192, 497, 543, 845
PscI ACATGT 2 cut(s) 308, 656
PspN4I GGNNCC 3 cut(s) 117, 461, 809
PspPI GGNCC 3 cut(s) 128, 479, 827
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 3 cut(s) 123, 637, 883
RsaNI GTAC 3 cut(s) 122, 636, 882
RseI CAYNNNNRTG 3 cut(s) 393, 621, 741
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
Sau3AI GATC 4 cut(s) 4, 115, 328, 604
Sau96I GGNCC 3 cut(s) 128, 479, 827
ScaI AGTACT 1 cut(s) 123
SduI GDGCHC 2 cut(s) 349, 748
SfaNI GCATC 4 cut(s) 192, 543, 903, 961
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 3 cut(s) 128, 479, 827
SmiMI CAYNNNNRTG 3 cut(s) 393, 621, 741
SpeI ACTAGT 2 cut(s) 442, 790
SphI GCATGC 1 cut(s) 398
Sse9I AATT 6 cut(s) 158, 256, 352, 368, 629, 700
SsiI CCGC 1 cut(s) 220
SspMI CTAG 3 cut(s) 132, 443, 791
TaaI ACNGT 2 cut(s) 140, 491
TaiI ACGT 2 cut(s) 30, 573
TaqI TCGA 2 cut(s) 327, 675
TasI AATT 6 cut(s) 158, 256, 352, 368, 629, 700
TatI WGTACW 1 cut(s) 121
TfiI GAWTC 2 cut(s) 437, 785
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 4 cut(s) 155, 405, 753, 971
TseFI GTSAC 4 cut(s) 23, 623, 668, 707
TseI GCWGC 6 cut(s) 77, 80, 190, 495, 541, 843
Tsp45I GTSAC 4 cut(s) 23, 623, 668, 707
TspDTI ATGAA 3 cut(s) 154, 842, 893
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 4 cut(s) 155, 405, 753, 971
Van91I CCANNNNNTGG 1 cut(s) 125
VneI GTGCAC 1 cut(s) 744
VpaK11BI GGWCC 3 cut(s) 128, 479, 827
XapI RAATTY 1 cut(s) 368
XceI RCATGY 3 cut(s) 312, 398, 660
XspI CTAG 3 cut(s) 132, 443, 791
ZrmI AGTACT 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 918
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.