BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C1_2 | PF03107 | 63 - 103 | 9.5e-08 | C1 domain |
| C1_2 | PF03107 | 182 - 235 | 3.8e-07 | C1 domain |
| C1_2 | PF03107 | 248 - 291 | 5.5e-11 | C1 domain |
| C1_2 | PF03107 | 300 - 348 | 6.5e-10 | C1 domain |
| C1_2 | PF03107 | 383 - 430 | 1.2e-10 | C1 domain |
| C1_2 | PF03107 | 555 - 604 | 1.8e-13 | C1 domain |
| C1-like_CT | PF22926 | 634 - 677 | 9.4e-13 | C1 domain-like, C-terminal |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 226 |
| Acc16I | TGCGCA | 1 cut(s) | 1633 |
| Acc65I | GGTACC | 1 cut(s) | 1876 |
| AccB1I | GGYRCC | 2 cut(s) | 1876, 1909 |
| AccI | GTMKAC | 1 cut(s) | 1930 |
| AccII | CGCG | 2 cut(s) | 1447, 1886 |
| AclI | AACGTT | 1 cut(s) | 229 |
| AclWI | GGATC | 1 cut(s) | 1232 |
| AcoI | YGGCCR | 2 cut(s) | 64, 248 |
| AcsI | RAATTY | 1 cut(s) | 946 |
| AcuI | CTGAAG | 2 cut(s) | 314, 670 |
| AcvI | CACGTG | 1 cut(s) | 86 |
| AcyI | GRCGYC | 1 cut(s) | 223 |
| AdeI | CACNNNGTG | 1 cut(s) | 815 |
| AfaI | GTAC | 3 cut(s) | 1450, 1667, 1878 |
| AfeI | AGCGCT | 1 cut(s) | 460 |
| AflII | CTTAAG | 1 cut(s) | 206 |
| AflIII | ACRYGT | 3 cut(s) | 1283, 1772, 1798 |
| AgsI | TTSAA | 8 cut(s) | 50, 391, 635, 842, 952, 1171, 1487, 1982 |
| AhlI | ACTAGT | 1 cut(s) | 724 |
| AjnI | CCWGG | 2 cut(s) | 1837, 1943 |
| AluBI | AGCT | 7 cut(s) | 211, 517, 594, 661, 1204, 1258, 1896 |
| AluI | AGCT | 7 cut(s) | 211, 517, 594, 661, 1204, 1258, 1896 |
| Alw21I | GWGCWC | 2 cut(s) | 83, 519 |
| Alw26I | GTCTC | 2 cut(s) | 1225, 1400 |
| AlwI | GGATC | 1 cut(s) | 1232 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 413 |
| Ama87I | CYCGRG | 2 cut(s) | 170, 589 |
| Aor51HI | AGCGCT | 1 cut(s) | 460 |
| AoxI | GGCC | 3 cut(s) | 64, 248, 646 |
| ApoI | RAATTY | 1 cut(s) | 946 |
| Asp718I | GGTACC | 1 cut(s) | 1876 |
| AspA2I | CCTAGG | 1 cut(s) | 1298 |
| AspLEI | GCGC | 4 cut(s) | 158, 461, 1108, 1634 |
| AspS9I | GGNCC | 2 cut(s) | 584, 1841 |
| AsuC2I | CCSGG | 1 cut(s) | 76 |
| AsuHPI | GGTGA | 7 cut(s) | 517, 755, 827, 1528, 1709, 1727, 1829 |
| AvaI | CYCGRG | 2 cut(s) | 170, 589 |
| AvaII | GGWCC | 2 cut(s) | 584, 1841 |
| AvrII | CCTAGG | 1 cut(s) | 1298 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1432, 1465 |
| BanI | GGYRCC | 2 cut(s) | 1876, 1909 |
| BanII | GRGCYC | 1 cut(s) | 519 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1649, 1681 |
| BauI | CACGAG | 1 cut(s) | 749 |
| BbrPI | CACGTG | 1 cut(s) | 86 |
| BbsI | GAAGAC | 2 cut(s) | 749, 830 |
| Bbv12I | GWGCWC | 2 cut(s) | 83, 519 |
| BccI | CCATC | 7 cut(s) | 39, 198, 974, 1172, 1683, 1706, 1988 |
| BceAI | ACGGC | 2 cut(s) | 51, 263 |
| BciT130I | CCWGG | 2 cut(s) | 1839, 1945 |
| BclI | TGATCA | 2 cut(s) | 907, 1153 |
| BcnI | CCSGG | 1 cut(s) | 76 |
| BcoDI | GTCTC | 2 cut(s) | 1225, 1400 |
| BcuI | ACTAGT | 1 cut(s) | 724 |
| BfaI | CTAG | 7 cut(s) | 345, 725, 1017, 1047, 1076, 1299, 1956 |
| BfmI | CTRYAG | 1 cut(s) | 1246 |
| BfoI | RGCGCY | 1 cut(s) | 462 |
| BfrI | CTTAAG | 1 cut(s) | 206 |
| BisI | GCNGC | 1 cut(s) | 967 |
| BlnI | CCTAGG | 1 cut(s) | 1298 |
| BlsI | GCNGC | 1 cut(s) | 968 |
| Bme1390I | CCNGG | 3 cut(s) | 76, 1839, 1945 |
| Bme18I | GGWCC | 2 cut(s) | 584, 1841 |
| BmeT110I | CYCGRG | 2 cut(s) | 170, 589 |
| BmgT120I | GGNCC | 2 cut(s) | 584, 1841 |
| BmiI | GGNNCC | 3 cut(s) | 586, 1878, 1911 |
| BmrFI | CCNGG | 3 cut(s) | 76, 1839, 1945 |
| BmsI | GCATC | 9 cut(s) | 208, 523, 763, 894, 924, 1516, 1741, 1768, 1949 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1566 |
| BpiI | GAAGAC | 2 cut(s) | 749, 830 |
| BpmI | CTGGAG | 1 cut(s) | 1927 |
| BpuEI | CTTGAG | 1 cut(s) | 533 |
| BpuMI | CCSGG | 1 cut(s) | 76 |
| BsaAI | YACGTR | 1 cut(s) | 86 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1674 |
| BsaHI | GRCGYC | 1 cut(s) | 223 |
| BsaJI | CCNNGG | 4 cut(s) | 1298, 1884, 1989, 2039 |
| BsaWI | WCCGGW | 1 cut(s) | 1087 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 2036 |
| Bse118I | RCCGGY | 1 cut(s) | 250 |
| Bse1I | ACTGG | 3 cut(s) | 418, 1414, 1727 |
| Bse3DI | GCAATG | 3 cut(s) | 124, 454, 802 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1674 |
| BseBI | CCWGG | 2 cut(s) | 1839, 1945 |
| BseDI | CCNNGG | 4 cut(s) | 1298, 1884, 1989, 2039 |
| BseGI | GGATG | 9 cut(s) | 31, 190, 373, 985, 1507, 1513, 1675, 1717, 1999 |
| BseJI | GATNNNNATC | 1 cut(s) | 1674 |
| BseMI | GCAATG | 3 cut(s) | 124, 454, 802 |
| BseMII | CTCAG | 1 cut(s) | 150 |
| BseNI | ACTGG | 3 cut(s) | 418, 1414, 1727 |
| BseX3I | CGGCCG | 1 cut(s) | 248 |
| Bsh1236I | CGCG | 2 cut(s) | 1447, 1886 |
| Bsh1285I | CGRYCG | 1 cut(s) | 251 |
| BshFI | GGCC | 3 cut(s) | 66, 250, 648 |
| BshNI | GGYRCC | 2 cut(s) | 1876, 1909 |
| BsiEI | CGRYCG | 1 cut(s) | 251 |
| BsiHKAI | GWGCWC | 2 cut(s) | 83, 519 |
| BsiHKCI | CYCGRG | 2 cut(s) | 170, 589 |
| BsiSI | CCGG | 3 cut(s) | 75, 251, 1088 |
| BslFI | GGGAC | 3 cut(s) | 298, 820, 1076 |
| BsmAI | GTCTC | 2 cut(s) | 1225, 1400 |
| BsmBI | CGTCTC | 1 cut(s) | 1225 |
| BsmFI | GGGAC | 3 cut(s) | 298, 820, 1076 |
| BsmI | GAATGC | 1 cut(s) | 1974 |
| BsnI | GGCC | 3 cut(s) | 66, 250, 648 |
| BsoBI | CYCGRG | 2 cut(s) | 170, 589 |
| Bsp1286I | GDGCHC | 2 cut(s) | 83, 519 |
| Bsp143I | GATC | 6 cut(s) | 174, 637, 907, 1153, 1227, 1237 |
| BspANI | GGCC | 3 cut(s) | 66, 250, 648 |
| BspCNI | CTCAG | 1 cut(s) | 151 |
| BspFNI | CGCG | 2 cut(s) | 1447, 1886 |
| BspHI | TCATGA | 5 cut(s) | 25, 852, 1150, 1156, 1498 |
| BspLI | GGNNCC | 3 cut(s) | 586, 1878, 1911 |
| BspPI | GGATC | 1 cut(s) | 1232 |
| BspT107I | GGYRCC | 2 cut(s) | 1876, 1909 |
| BspTI | CTTAAG | 1 cut(s) | 206 |
| BsrDI | GCAATG | 3 cut(s) | 124, 454, 802 |
| BsrFI | RCCGGY | 1 cut(s) | 250 |
| BsrI | ACTGG | 3 cut(s) | 418, 1414, 1727 |
| BssAI | RCCGGY | 1 cut(s) | 250 |
| BssECI | CCNNGG | 4 cut(s) | 1298, 1884, 1989, 2039 |
| BssMI | GATC | 6 cut(s) | 174, 637, 907, 1153, 1227, 1237 |
| BssNI | GRCGYC | 1 cut(s) | 223 |
| BssSI | CACGAG | 1 cut(s) | 749 |
| BssT1I | CCWWGG | 2 cut(s) | 1298, 2039 |
| Bst2BI | CACGAG | 1 cut(s) | 749 |
| Bst2UI | CCWGG | 2 cut(s) | 1839, 1945 |
| Bst4CI | ACNGT | 4 cut(s) | 113, 671, 976, 1855 |
| Bst6I | CTCTTC | 2 cut(s) | 619, 1596 |
| BstACI | GRCGYC | 1 cut(s) | 223 |
| BstAFI | CTTAAG | 1 cut(s) | 206 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 404 |
| BstBAI | YACGTR | 1 cut(s) | 86 |
| BstC8I | GCNNGC | 5 cut(s) | 405, 538, 1202, 1216, 1884 |
| BstDEI | CTNAG | 2 cut(s) | 159, 1373 |
| BstDSI | CCRYGG | 1 cut(s) | 1884 |
| BstEII | GGTNACC | 1 cut(s) | 815 |
| BstF5I | GGATG | 9 cut(s) | 31, 190, 373, 985, 1507, 1513, 1675, 1717, 1999 |
| BstFNI | CGCG | 2 cut(s) | 1447, 1886 |
| BstH2I | RGCGCY | 1 cut(s) | 462 |
| BstHHI | GCGC | 4 cut(s) | 158, 461, 1108, 1634 |
| BstKTI | GATC | 6 cut(s) | 177, 640, 910, 1156, 1230, 1240 |
| BstMAI | GTCTC | 2 cut(s) | 1225, 1400 |
| BstMBI | GATC | 6 cut(s) | 174, 637, 907, 1153, 1227, 1237 |
| BstMCI | CGRYCG | 1 cut(s) | 251 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 114, 134, 404, 618, 963 |
| BstNI | CCWGG | 2 cut(s) | 1839, 1945 |
| BstNSI | RCATGY | 5 cut(s) | 1218, 1287, 1316, 1776, 1802 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1566 |
| BstPI | GGTNACC | 1 cut(s) | 815 |
| BstSCI | CCNGG | 3 cut(s) | 74, 1837, 1943 |
| BstSFI | CTRYAG | 1 cut(s) | 1246 |
| BstUI | CGCG | 2 cut(s) | 1447, 1886 |
| BstV2I | GAAGAC | 2 cut(s) | 749, 830 |
| BstZI | CGGCCG | 1 cut(s) | 248 |
| BsuRI | GGCC | 3 cut(s) | 66, 250, 648 |
| BtgI | CCRYGG | 1 cut(s) | 1884 |
| BtgZI | GCGATG | 1 cut(s) | 896 |
| BtsCI | GGATG | 9 cut(s) | 31, 190, 373, 985, 1507, 1513, 1675, 1717, 1999 |
| BtsIMutI | CAGTG | 3 cut(s) | 667, 981, 1407 |
| Cac8I | GCNNGC | 5 cut(s) | 405, 538, 1202, 1216, 1884 |
| CaiI | CAGNNNCTG | 1 cut(s) | 413 |
| CciI | TCATGA | 5 cut(s) | 25, 852, 1150, 1156, 1498 |
| CfoI | GCGC | 4 cut(s) | 158, 461, 1108, 1634 |
| Cfr10I | RCCGGY | 1 cut(s) | 250 |
| Cfr13I | GGNCC | 2 cut(s) | 584, 1841 |
| Cfr42I | CCGCGG | 1 cut(s) | 1887 |
| CseI | GACGC | 1 cut(s) | 1207 |
| Csp6I | GTAC | 3 cut(s) | 1449, 1666, 1877 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 784, 819, 1668, 1703 |
| CviQI | GTAC | 3 cut(s) | 1449, 1666, 1877 |
| DdeI | CTNAG | 2 cut(s) | 159, 1373 |
| DpnI | GATC | 6 cut(s) | 176, 639, 909, 1155, 1229, 1239 |
| DpnII | GATC | 6 cut(s) | 174, 637, 907, 1153, 1227, 1237 |
| DraIII | CACNNNGTG | 1 cut(s) | 815 |
| EaeI | YGGCCR | 2 cut(s) | 64, 248 |
| EagI | CGGCCG | 1 cut(s) | 248 |
| Eam1104I | CTCTTC | 2 cut(s) | 619, 1596 |
| EarI | CTCTTC | 2 cut(s) | 619, 1596 |
| Ecl136II | GAGCTC | 1 cut(s) | 517 |
| EclXI | CGGCCG | 1 cut(s) | 248 |
| Eco130I | CCWWGG | 2 cut(s) | 1298, 2039 |
| Eco24I | GRGCYC | 1 cut(s) | 519 |
| Eco47I | GGWCC | 2 cut(s) | 584, 1841 |
| Eco47III | AGCGCT | 1 cut(s) | 460 |
| Eco52I | CGGCCG | 1 cut(s) | 248 |
| Eco53kI | GAGCTC | 1 cut(s) | 517 |
| Eco57I | CTGAAG | 2 cut(s) | 314, 670 |
| Eco72I | CACGTG | 1 cut(s) | 86 |
| Eco88I | CYCGRG | 2 cut(s) | 170, 589 |
| Eco91I | GGTNACC | 1 cut(s) | 815 |
| EcoICRI | GAGCTC | 1 cut(s) | 517 |
| EcoO65I | GGTNACC | 1 cut(s) | 815 |
| EcoRII | CCWGG | 2 cut(s) | 1837, 1943 |
| EcoT14I | CCWWGG | 2 cut(s) | 1298, 2039 |
| EcoT22I | ATGCAT | 2 cut(s) | 297, 698 |
| EcoT38I | GRGCYC | 1 cut(s) | 519 |
| ErhI | CCWWGG | 2 cut(s) | 1298, 2039 |
| Esp3I | CGTCTC | 1 cut(s) | 1225 |
| FaqI | GGGAC | 3 cut(s) | 298, 820, 1076 |
| FauI | CCCGC | 2 cut(s) | 890, 1891 |
| FauNDI | CATATG | 2 cut(s) | 692, 1833 |
| FbaI | TGATCA | 2 cut(s) | 907, 1153 |
| FblI | GTMKAC | 1 cut(s) | 1930 |
| Fnu4HI | GCNGC | 1 cut(s) | 967 |
| FokI | GGATG | 9 cut(s) | 18, 177, 360, 992, 1494, 1500, 1662, 1724, 2006 |
| FriOI | GRGCYC | 1 cut(s) | 519 |
| Fsp4HI | GCNGC | 1 cut(s) | 967 |
| FspBI | CTAG | 7 cut(s) | 345, 725, 1017, 1047, 1076, 1299, 1956 |
| FspI | TGCGCA | 1 cut(s) | 1633 |
| GlaI | GCGC | 4 cut(s) | 157, 460, 1107, 1633 |
| GluI | GCNGC | 1 cut(s) | 967 |
| GsuI | CTGGAG | 1 cut(s) | 1927 |
| HaeII | RGCGCY | 1 cut(s) | 462 |
| HaeIII | GGCC | 3 cut(s) | 66, 250, 648 |
| HapII | CCGG | 3 cut(s) | 75, 251, 1088 |
| HgaI | GACGC | 1 cut(s) | 1207 |
| HhaI | GCGC | 4 cut(s) | 158, 461, 1108, 1634 |
| Hin1I | GRCGYC | 1 cut(s) | 223 |
| Hin6I | GCGC | 4 cut(s) | 156, 459, 1106, 1632 |
| HinP1I | GCGC | 4 cut(s) | 156, 459, 1106, 1632 |
| HincII | GTYRAC | 1 cut(s) | 227 |
| HindII | GTYRAC | 1 cut(s) | 227 |
| HindIII | AAGCTT | 3 cut(s) | 209, 1202, 1894 |
| HinfI | GANTC | 5 cut(s) | 161, 856, 1147, 1361, 2045 |
| HpaII | CCGG | 3 cut(s) | 75, 251, 1088 |
| HphI | GGTGA | 7 cut(s) | 517, 755, 827, 1528, 1709, 1727, 1829 |
| Hpy166II | GTNNAC | 5 cut(s) | 227, 245, 488, 1931, 2008 |
| Hpy188I | TCNGA | 3 cut(s) | 741, 938, 1990 |
| Hpy188III | TCNNGA | 7 cut(s) | 26, 782, 853, 1151, 1157, 1499, 1979 |
| Hpy8I | GTNNAC | 5 cut(s) | 227, 245, 488, 1931, 2008 |
| Hpy99I | CGWCG | 2 cut(s) | 483, 2053 |
| HpyAV | CCTTC | 5 cut(s) | 83, 623, 1073, 1342, 1575 |
| HpyCH4III | ACNGT | 4 cut(s) | 113, 671, 976, 1855 |
| HpyCH4IV | ACGT | 5 cut(s) | 85, 223, 229, 1023, 1731 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 114, 134, 404, 618, 963 |
| HpyF3I | CTNAG | 2 cut(s) | 159, 1373 |
| HpySE526I | ACGT | 5 cut(s) | 85, 223, 229, 1023, 1731 |
| Hsp92I | GRCGYC | 1 cut(s) | 223 |
| HspAI | GCGC | 4 cut(s) | 156, 459, 1106, 1632 |
| KpnI | GGTACC | 1 cut(s) | 1880 |
| Ksp22I | TGATCA | 2 cut(s) | 907, 1153 |
| KspI | CCGCGG | 1 cut(s) | 1887 |
| Kzo9I | GATC | 6 cut(s) | 174, 637, 907, 1153, 1227, 1237 |
| LmnI | GCTCC | 2 cut(s) | 466, 1946 |
| LweI | GCATC | 9 cut(s) | 208, 523, 763, 894, 924, 1516, 1741, 1768, 1949 |
| MaeI | CTAG | 7 cut(s) | 345, 725, 1017, 1047, 1076, 1299, 1956 |
| MaeII | ACGT | 5 cut(s) | 85, 223, 229, 1023, 1731 |
| MalI | GATC | 6 cut(s) | 176, 639, 909, 1155, 1229, 1239 |
| MboI | GATC | 6 cut(s) | 174, 637, 907, 1153, 1227, 1237 |
| MfeI | CAATTG | 1 cut(s) | 418 |
| MhlI | GDGCHC | 2 cut(s) | 83, 519 |
| MluCI | AATT | 6 cut(s) | 258, 355, 418, 847, 946, 1101 |
| MlyI | GAGTC | 3 cut(s) | 170, 1156, 2054 |
| MmeI | TCCRAC | 2 cut(s) | 1423, 1599 |
| MnlI | CCTC | 8 cut(s) | 98, 387, 573, 776, 857, 1108, 1984, 1996 |
| Mph1103I | ATGCAT | 2 cut(s) | 297, 698 |
| MseI | TTAA | 4 cut(s) | 207, 381, 1163, 2001 |
| MslI | CAYNNNNRTG | 4 cut(s) | 240, 500, 672, 1155 |
| MspA1I | CMGCKG | 1 cut(s) | 1886 |
| MspCI | CTTAAG | 1 cut(s) | 206 |
| MspI | CCGG | 3 cut(s) | 75, 251, 1088 |
| MspR9I | CCNGG | 3 cut(s) | 76, 1839, 1945 |
| MunI | CAATTG | 1 cut(s) | 418 |
| Mva1269I | GAATGC | 1 cut(s) | 1974 |
| MvaI | CCWGG | 2 cut(s) | 1839, 1945 |
| MvnI | CGCG | 2 cut(s) | 1447, 1886 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 114, 134, 404, 618, 963 |
| NciI | CCSGG | 1 cut(s) | 76 |
| NdeI | CATATG | 2 cut(s) | 692, 1833 |
| NdeII | GATC | 6 cut(s) | 174, 637, 907, 1153, 1227, 1237 |
| NlaIV | GGNNCC | 3 cut(s) | 586, 1878, 1911 |
| NmuCI | GTSAC | 9 cut(s) | 281, 502, 815, 1568, 1607, 1727, 1789, 1817, 1949 |
| NsbI | TGCGCA | 1 cut(s) | 1633 |
| NsiI | ATGCAT | 2 cut(s) | 297, 698 |
| NspI | RCATGY | 5 cut(s) | 1218, 1287, 1316, 1776, 1802 |
| PaeI | GCATGC | 1 cut(s) | 1218 |
| PagI | TCATGA | 5 cut(s) | 25, 852, 1150, 1156, 1498 |
| PciI | ACATGT | 3 cut(s) | 1283, 1772, 1798 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1550 |
| PctI | GAATGC | 1 cut(s) | 1974 |
| PfeI | GAWTC | 2 cut(s) | 856, 1361 |
| PkrI | GCNGC | 1 cut(s) | 968 |
| PleI | GAGTC | 3 cut(s) | 169, 1155, 2053 |
| PmaCI | CACGTG | 1 cut(s) | 86 |
| PmlI | CACGTG | 1 cut(s) | 86 |
| PpsI | GAGTC | 3 cut(s) | 169, 1155, 2053 |
| Ppu21I | YACGTR | 1 cut(s) | 86 |
| PscI | ACATGT | 3 cut(s) | 1283, 1772, 1798 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1566 |
| Psp124BI | GAGCTC | 1 cut(s) | 519 |
| Psp1406I | AACGTT | 1 cut(s) | 229 |
| Psp6I | CCWGG | 2 cut(s) | 1837, 1943 |
| PspCI | CACGTG | 1 cut(s) | 86 |
| PspEI | GGTNACC | 1 cut(s) | 815 |
| PspGI | CCWGG | 2 cut(s) | 1837, 1943 |
| PspN4I | GGNNCC | 3 cut(s) | 586, 1878, 1911 |
| PspPI | GGNCC | 2 cut(s) | 584, 1841 |
| PstNI | CAGNNNCTG | 1 cut(s) | 413 |
| RsaI | GTAC | 3 cut(s) | 1450, 1667, 1878 |
| RsaNI | GTAC | 3 cut(s) | 1449, 1666, 1877 |
| RseI | CAYNNNNRTG | 4 cut(s) | 240, 500, 672, 1155 |
| SacI | GAGCTC | 1 cut(s) | 519 |
| SacII | CCGCGG | 1 cut(s) | 1887 |
| SaqAI | TTAA | 4 cut(s) | 207, 381, 1163, 2001 |
| SatI | GCNGC | 1 cut(s) | 967 |
| Sau3AI | GATC | 6 cut(s) | 174, 637, 907, 1153, 1227, 1237 |
| Sau96I | GGNCC | 2 cut(s) | 584, 1841 |
| SchI | GAGTC | 3 cut(s) | 170, 1156, 2054 |
| ScrFI | CCNGG | 3 cut(s) | 76, 1839, 1945 |
| SduI | GDGCHC | 2 cut(s) | 83, 519 |
| SfaNI | GCATC | 9 cut(s) | 208, 523, 763, 894, 924, 1516, 1741, 1768, 1949 |
| SfcI | CTRYAG | 1 cut(s) | 1246 |
| Sfr303I | CCGCGG | 1 cut(s) | 1887 |
| SgrBI | CCGCGG | 1 cut(s) | 1887 |
| SinI | GGWCC | 2 cut(s) | 584, 1841 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 240, 500, 672, 1155 |
| SmlI | CTYRAG | 2 cut(s) | 206, 512 |
| SmoI | CTYRAG | 2 cut(s) | 206, 512 |
| SpeI | ACTAGT | 1 cut(s) | 724 |
| SphI | GCATGC | 1 cut(s) | 1218 |
| Sse9I | AATT | 6 cut(s) | 258, 355, 418, 847, 946, 1101 |
| SspI | AATATT | 1 cut(s) | 1167 |
| SspMI | CTAG | 7 cut(s) | 345, 725, 1017, 1047, 1076, 1299, 1956 |
| SstI | GAGCTC | 1 cut(s) | 519 |
| StyD4I | CCNGG | 3 cut(s) | 74, 1837, 1943 |
| StyI | CCWWGG | 2 cut(s) | 1298, 2039 |
| TaaI | ACNGT | 4 cut(s) | 113, 671, 976, 1855 |
| TaiI | ACGT | 5 cut(s) | 88, 226, 232, 1026, 1734 |
| TaqI | TCGA | 7 cut(s) | 275, 862, 873, 1007, 1113, 1478, 1922 |
| TaqII | GACCGA | 1 cut(s) | 834 |
| TasI | AATT | 6 cut(s) | 258, 355, 418, 847, 946, 1101 |
| TauI | GCSGC | 1 cut(s) | 969 |
| TfiI | GAWTC | 2 cut(s) | 856, 1361 |
| Tru1I | TTAA | 4 cut(s) | 207, 381, 1163, 2001 |
| Tru9I | TTAA | 4 cut(s) | 207, 381, 1163, 2001 |
| TscAI | CASTG | 3 cut(s) | 674, 981, 1414 |
| TseFI | GTSAC | 9 cut(s) | 281, 502, 815, 1568, 1607, 1727, 1789, 1817, 1949 |
| Tsp45I | GTSAC | 9 cut(s) | 281, 502, 815, 1568, 1607, 1727, 1789, 1817, 1949 |
| TspGWI | ACGGA | 1 cut(s) | 1230 |
| TspRI | CASTG | 3 cut(s) | 674, 981, 1414 |
| Vha464I | CTTAAG | 1 cut(s) | 206 |
| VpaK11BI | GGWCC | 2 cut(s) | 584, 1841 |
| XapI | RAATTY | 1 cut(s) | 946 |
| XceI | RCATGY | 5 cut(s) | 1218, 1287, 1316, 1776, 1802 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1406 |
| XmaJI | CCTAGG | 1 cut(s) | 1298 |
| XmiI | GTMKAC | 1 cut(s) | 1930 |
| XspI | CTAG | 7 cut(s) | 345, 725, 1017, 1047, 1076, 1299, 1956 |
| ZraI | GACGTC | 1 cut(s) | 224 |
| Zsp2I | ATGCAT | 2 cut(s) | 297, 698 |