AT3G25850

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000226
Physical Location & Seq
Reverse (-)
9458178 .. 9458954
777 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25850.1

Sequence Viewer

Length: 777 bp
ATGACCGAAAAGAAGTTTCCTTTTCACGATCATCCTTTAGCATATGAGAAATTGGACAGATTTTCTTGCATTTTGTGCAAAAAGAAAGGTGGTTTTGGCTATTTCTGCGATAAGTGCTATTTTTGGGGGCATAAGGAATGCATCAAGCGCTCACTTCTGCATCCATCTCCATGCAAACATTCTCTCAAAATCTACACACTCGAGGCATTGGGCTATGCAGGTGACCATTGTCATTTTTGTAGAGATTATCTTCTTGATGATTTTTTTCATTGTTTGATATGCAACATCAACATGGATCTCAAATGTCTTAAAGATCCACCACCATCAAGTATTTATCACCCAAAAAACCATATGCATATGCTTACTCTTTTGCCGAGAGTGGTCACATTTACTTGTAATGCATGTAGCGTAGAAGGTAAGCGTAATCCTTATGTATGTCTTGAATGTAATTTGATGTTCCACAAGGATTGTATATATCTACCACGAGTTATAAGCATCAACTGCCATGATCATCGCATTTCTCGCATTTTTCATCTTGGTCTCGGAGATTGGAAATGTGGAATCTGCCGACAAAAGATTAGTTGCTCCCATGGAGCTTTTACATGCTTGCGTTGTCCTAGTCTTGCATTTCATTTAAAATGTGCGATGAAAGATGACGTGTGGGATGGAAAAGAATTCGAAGCTGAACCCAAAGAAGAGCTTGAAGATGAACTCGAAGATGATTCCGAAAAGGAAATTGAAGATGATAGTTCTGAAGAAGAAATCGAAGAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

258

Amino Acids

30.08

Weight (kDa)

6.0

Isoelectric Point (pI)

58.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 7 - 48 1.7e-07 C1 domain
C1_2 PF03107 116 - 158 2.4e-10 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 491
AarI CACCTGC 1 cut(s) 209
Acc36I ACCTGC 1 cut(s) 209
AclWI GGATC 2 cut(s) 303, 308
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 1 cut(s) 774
AfeI AGCGCT 1 cut(s) 149
AflIII ACRYGT 1 cut(s) 657
AgsI TTSAA 3 cut(s) 443, 704, 740
AjiI CACGTC 1 cut(s) 658
AluBI AGCT 3 cut(s) 596, 683, 700
AluI AGCT 3 cut(s) 596, 683, 700
Alw26I GTCTC 1 cut(s) 545
AlwI GGATC 2 cut(s) 303, 308
Ama87I CYCGRG 1 cut(s) 200
Aor51HI AGCGCT 1 cut(s) 149
ApoI RAATTY 1 cut(s) 674
AspLEI GCGC 1 cut(s) 150
AsuHPI GGTGA 2 cut(s) 233, 329
AsuII TTCGAA 1 cut(s) 678
AvaI CYCGRG 1 cut(s) 200
BauI CACGAG 1 cut(s) 483
BccI CCATC 3 cut(s) 172, 331, 659
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 545
BfaI CTAG 1 cut(s) 618
BfoI RGCGCY 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 200
BmgBI CACGTC 1 cut(s) 658
BmsI GCATC 3 cut(s) 150, 169, 504
BoxI GACNNNNGTC 1 cut(s) 228
Bpu14I TTCGAA 1 cut(s) 678
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 1 cut(s) 589
BseDI CCNNGG 1 cut(s) 589
BseGI GGATG 3 cut(s) 31, 160, 670
BsiHKCI CYCGRG 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 545
BsoBI CYCGRG 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 678
Bsp143I GATC 4 cut(s) 28, 295, 313, 508
Bsp19I CCATGG 1 cut(s) 589
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 2 cut(s) 303, 308
BspQI GCTCTTC 1 cut(s) 690
BspT104I TTCGAA 1 cut(s) 678
BspTNI GGTCTC 1 cut(s) 545
BssECI CCNNGG 1 cut(s) 589
BssMI GATC 4 cut(s) 28, 295, 313, 508
BssSI CACGAG 1 cut(s) 483
BssT1I CCWWGG 1 cut(s) 589
Bst2BI CACGAG 1 cut(s) 483
Bst6I CTCTTC 1 cut(s) 690
BstAPI GCANNNNNTGC 2 cut(s) 75, 501
BstBI TTCGAA 1 cut(s) 678
BstC8I GCNNGC 1 cut(s) 608
BstDSI CCRYGG 1 cut(s) 589
BstEII GGTNACC 1 cut(s) 221
BstF5I GGATG 3 cut(s) 31, 160, 670
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 4 cut(s) 31, 298, 316, 511
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 4 cut(s) 28, 295, 313, 508
BstMWI GCNNNNNNNGC 6 cut(s) 75, 105, 114, 147, 501, 522
BstNSI RCATGY 2 cut(s) 405, 606
BstPAI GACNNNNGTC 1 cut(s) 228
BstPI GGTNACC 1 cut(s) 221
BstX2I RGATCY 2 cut(s) 295, 313
BstYI RGATCY 2 cut(s) 295, 313
BtgI CCRYGG 1 cut(s) 589
BtgZI GCGATG 2 cut(s) 497, 659
BtrI CACGTC 1 cut(s) 658
BtsCI GGATG 3 cut(s) 31, 160, 670
BveI ACCTGC 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 608
CfoI GCGC 1 cut(s) 150
CspCI CAANNNNNGTGG 2 cut(s) 449, 484
CviAII CATG 6 cut(s) 171, 292, 402, 506, 590, 603
CviJI RGCY 5 cut(s) 99, 213, 596, 683, 700
CviKI_1 RGCY 5 cut(s) 99, 213, 596, 683, 700
DpnI GATC 4 cut(s) 30, 297, 315, 510
DpnII GATC 4 cut(s) 28, 295, 313, 508
DraI TTTAAA 1 cut(s) 636
Eam1104I CTCTTC 1 cut(s) 690
EarI CTCTTC 1 cut(s) 690
Eco130I CCWWGG 1 cut(s) 589
Eco31I GGTCTC 1 cut(s) 545
Eco47III AGCGCT 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 774
Eco88I CYCGRG 1 cut(s) 200
Eco91I GGTNACC 1 cut(s) 221
EcoO65I GGTNACC 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 674
EcoT14I CCWWGG 1 cut(s) 589
EcoT22I ATGCAT 3 cut(s) 143, 357, 403
ErhI CCWWGG 1 cut(s) 589
FaeI CATG 6 cut(s) 174, 295, 405, 509, 593, 606
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FatI CATG 6 cut(s) 170, 291, 401, 505, 589, 602
FauNDI CATATG 3 cut(s) 43, 351, 357
FbaI TGATCA 1 cut(s) 508
FokI GGATG 3 cut(s) 18, 147, 677
FspBI CTAG 1 cut(s) 618
GlaI GCGC 1 cut(s) 149
HaeII RGCGCY 1 cut(s) 151
HhaI GCGC 1 cut(s) 150
Hin1II CATG 6 cut(s) 174, 295, 405, 509, 593, 606
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 2 cut(s) 561, 722
HphI GGTGA 2 cut(s) 233, 329
Hpy188I TCNGA 3 cut(s) 545, 727, 754
Hpy188III TCNNGA 3 cut(s) 26, 254, 440
HpyAV CCTTC 1 cut(s) 407
HpyCH4IV ACGT 1 cut(s) 657
HpyF10VI GCNNNNNNNGC 6 cut(s) 75, 105, 114, 147, 501, 522
HpySE526I ACGT 1 cut(s) 657
Hsp92II CATG 6 cut(s) 174, 295, 405, 509, 593, 606
HspAI GCGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 4 cut(s) 28, 295, 313, 508
LguI GCTCTTC 1 cut(s) 690
LmnI GCTCC 2 cut(s) 590, 593
LpnPI CCDG 1 cut(s) 204
LweI GCATC 3 cut(s) 150, 169, 504
MaeI CTAG 1 cut(s) 618
MaeII ACGT 1 cut(s) 657
MaeIII GTNAC 2 cut(s) 221, 382
MalI GATC 4 cut(s) 30, 297, 315, 510
MboI GATC 4 cut(s) 28, 295, 313, 508
MboII GAAGA 7 cut(s) 242, 707, 716, 728, 752, 767, 770
MflI RGATCY 2 cut(s) 295, 313
MluCI AATT 4 cut(s) 50, 448, 674, 735
MnlI CCTC 1 cut(s) 196
Mph1103I ATGCAT 3 cut(s) 143, 357, 403
MseI TTAA 2 cut(s) 309, 635
MslI CAYNNNNRTG 2 cut(s) 169, 290
Mva1269I GAATGC 1 cut(s) 143
MwoI GCNNNNNNNGC 6 cut(s) 75, 105, 114, 147, 501, 522
NcoI CCATGG 1 cut(s) 589
NdeI CATATG 3 cut(s) 43, 351, 357
NdeII GATC 4 cut(s) 28, 295, 313, 508
NlaIII CATG 6 cut(s) 174, 295, 405, 509, 593, 606
NmeAIII GCCGAG 1 cut(s) 399
NmuCI GTSAC 2 cut(s) 221, 382
NsiI ATGCAT 3 cut(s) 143, 357, 403
NspI RCATGY 2 cut(s) 405, 606
NspV TTCGAA 1 cut(s) 678
PaeR7I CTCGAG 1 cut(s) 200
PaqCI CACCTGC 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 690
PctI GAATGC 1 cut(s) 143
PfeI GAWTC 2 cut(s) 561, 722
PshAI GACNNNNGTC 1 cut(s) 228
PsiI TTATAA 1 cut(s) 491
PspEI GGTNACC 1 cut(s) 221
PspXI VCTCGAGB 1 cut(s) 200
PsuI RGATCY 2 cut(s) 295, 313
RseI CAYNNNNRTG 2 cut(s) 169, 290
SapI GCTCTTC 1 cut(s) 690
SaqAI TTAA 2 cut(s) 309, 635
Sau3AI GATC 4 cut(s) 28, 295, 313, 508
SetI ASST 7 cut(s) 91, 223, 418, 598, 660, 685, 702
SfaNI GCATC 3 cut(s) 150, 169, 504
Sfr274I CTCGAG 1 cut(s) 200
SfuI TTCGAA 1 cut(s) 678
SlaI CTCGAG 1 cut(s) 200
SmiMI CAYNNNNRTG 2 cut(s) 169, 290
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 4 cut(s) 50, 448, 674, 735
SspMI CTAG 1 cut(s) 618
StyI CCWWGG 1 cut(s) 589
TaiI ACGT 1 cut(s) 660
TaqI TCGA 4 cut(s) 201, 678, 714, 765
TaqII GACCGA 1 cut(s) 20
TasI AATT 4 cut(s) 50, 448, 674, 735
TfiI GAWTC 2 cut(s) 561, 722
Tru1I TTAA 2 cut(s) 309, 635
Tru9I TTAA 2 cut(s) 309, 635
TseFI GTSAC 2 cut(s) 221, 382
Tsp45I GTSAC 2 cut(s) 221, 382
TspDTI ATGAA 5 cut(s) 257, 521, 620, 662, 723
XapI RAATTY 1 cut(s) 674
XceI RCATGY 2 cut(s) 405, 606
XhoI CTCGAG 1 cut(s) 200
XspI CTAG 1 cut(s) 618
Zsp2I ATGCAT 3 cut(s) 143, 357, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.