Rorug03G0180900

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000226
Physical Location & Seq
Reverse (-)
15499212 .. 15501829
2618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0180900.1

Sequence Viewer

Length: 2034 bp
ATGAAGAAGAAGGCTTATCCTTTCGCCTTAGCCTTCCTACTCCTACTCACCTCGGCTAAACTCTCACTCTCCTCTTCGCCGCCGAACGACACGTCAGCTCTCACCGACTTCCGCCTCAAAACCGACACCCACGGCTACCTCCGCTCCAACTGGACCGGACCCGACCCCTGCGCCGCTGCATGGGTCGGAGTCCGATGCTCCACTAACAACCTCCGAGTCGTCGGTCTCTCCCTCCCTTCCCTCAACCTGCGGGGCCCGCTCGACTCTCTGGCTCAGCTGGACCAACTCCGCCTTCTTGACCTCCACAACAACCGCCTCAACGGCACCGTTTTGCCCTTAGCCAACTGCACCAACCTCAAGCTGCTCTACCTCGCCGGGAACGACCTCTCCGGCGAGATCCCGCCGGAATTCGCCTCGCTCCGGCGGCTTCTCCGTCTCGACCTCTCCGACAACAACATCCGCGGCGCCGTCCCCGACGGCATCTCCCGCCTGAGCCGGCTCCTCACGCTCCGGCTCCAGAACAACCTCCTCACCGGCAAGATCCCCGACCTCTCCGGCTCCCTCTCCGACCTGAAGGAGCTTAACCTGACCAACAACGAGCTCTATGGAAAATTGCCGGAGGGTTTGCTCAGAAAATTCGGAGAGGAAAGCTTTTCCGGCAACGAAGGGCTCTGCGGCTCGTCTCCGTTACCGGCTTGCTCCTTCACCGGAGCTAACCCACCCTCGGCGGCTTCGACCGAAACGGTGCCGTCTAACCCCAGCTCGTTGCCTCAAACAAGCATCATAAACGAGCCGAGGGTCAAAAACTCGAGAAAGGGATTGAGTCCTGGAGCAATAGTAGCAATTGTGATAGCGAATTGCGTGGCCATTCTGGTTATCATTTCGTTCATTGTGGCTCACTACTGCGCCAGAGACCGAAGCTCGAACTCGATCGGGGGAAGCGAAGCCGGGAAGAGGAAGAGTGGAAGTAGCTATGGAGGTGAAAAGAGGGTGTATGCTAACAATGGGGGTGGTGACAGTGATGGGACTAATGCTACTGACCGGAGTAAGCTGGTGTTTTTCGACCGGAGGAAGCAGTTTGAGCTCGAGGACTTGCTCCGGGCCTCGGCGGAGATGTTGGGGAAAGGGAGCTTGGGGACGGTGTACAAGGCGGTGCTTGATGATGGTTGTACAATGGCGGTGAAGAGGCTCAAGGATGCGAACCCTTGTGCGAGGAAAGAGTTTGAGCAGTATATGGATTTGATTGGGAAGATTAAGCACCCTAATGTGGTGAGGCTTAGTGCTTATTACTATGCTAAGGAGGAGAAGCTTCTTGTGTATGACTATCTGCCTAATGGGAGCTTGCACTCACTTCTTCATGAGAATCGCGGTCCGGGCAGAATTCCTTTGGATTGGACTACAAGGATCAGCTTGGTGTTGGGAGCTGCCCGCGGACTAGCTCGGATTCATGAAGAGTTCAGCGCTGCAAAAGTACCACATGGGAATGTGAAGTCTTCCAATGTGCTGCTTGACAAGAACGGTGTGGCTTGCATTTCTGACTTCGGACTGTCCCTGCTTCTGAACCCGGTTCACGCCATTGCGAGGTTGGGAGGATACAGAGCTCCTGAGCAGGCAGAGACCAAGAGGCTATCGCAGACAGCAGACGTGTACAGCTTCGGGGTCTTGCTGTTGGAGGTTCTCACAGGGAGAGCTCCTTCCCTGTACCCTTCTCCTACTCGCCCACGCATGGATGAGGAGGAGCAGGCGGTGGACCTGCCGAAATGGGTGAGGTCTGTGGTGAAGGAAGAGTGGACTGGAGAGGTGTTTGATCAGGAACTTCTGAGGTACAAGAACATCGAGGAGGAGCTTGTGTCAATGCTCCATGTGGGATTGGCATGCGTGGTGCCTCAGCCAGAAAAGAGGCCTACTATGGTTGAAGTGGCTAAGATGGTGGAGGACATAAGAGTGGAGAGATCTCCTCTTGGGGAAGACTATGATGATTCCCGCAATTCGCTTTCTCCTTCCATTCCCACCACCGAAGATGGGCTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

677

Amino Acids

73.83

Weight (kDa)

8.16

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 89 - 198 9.7e-08 Leucine-rich repeat region
PK_Tyr_Ser-Thr PF07714 371 - 642 8.7e-33 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 371 - 642 3.1e-32 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 255, 1761
AccB1I GGYRCC 4 cut(s) 323, 464, 745, 1882
AccBSI CCGCTC 2 cut(s) 144, 259
AccII CGCG 3 cut(s) 462, 1368, 1431
AclWI GGATC 3 cut(s) 391, 535, 1412
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 3 cut(s) 407, 635, 1380
AcuI CTGAAG 1 cut(s) 593
AcyI GRCGYC 1 cut(s) 465
AfaI GTAC 6 cut(s) 1145, 1171, 1473, 1649, 1703, 1826
AfeI AGCGCT 1 cut(s) 1462
AfiI CCNNNNNNNGG 9 cut(s) 180, 420, 724, 954, 1105, 1267, 1581, 1726, 2022
AflIII ACRYGT 2 cut(s) 90, 1644
AgsI TTSAA 1 cut(s) 1916
AjiI CACGTC 2 cut(s) 93, 1645
AjnI CCWGG 1 cut(s) 826
AjuI GAANNNNNNNTTGG 4 cut(s) 276, 308, 1115, 1147
AloI GAACNNNNNNTCC 2 cut(s) 371, 403
Alw21I GWGCWC 4 cut(s) 603, 1086, 1603, 1693
Alw26I GTCTC 5 cut(s) 230, 440, 687, 906, 1610
AlwI GGATC 3 cut(s) 391, 535, 1412
Ama87I CYCGRG 2 cut(s) 808, 1085
Aor51HI AGCGCT 1 cut(s) 1462
AoxI GGCC 4 cut(s) 253, 864, 1101, 1901
ApaI GGGCCC 1 cut(s) 257
ApeKI GCWGC 5 cut(s) 176, 361, 1424, 1463, 1504
ApoI RAATTY 3 cut(s) 407, 635, 1380
ArsI GACNNNNNNTTYG 2 cut(s) 77, 109
AspLEI GCGC 4 cut(s) 173, 467, 908, 1463
AspS9I GGNCC 8 cut(s) 153, 158, 253, 254, 280, 1101, 1370, 1750
AsuC2I CCSGG 5 cut(s) 376, 949, 1100, 1374, 1565
AsuNHI GCTAGC 1 cut(s) 2026
AvaI CYCGRG 2 cut(s) 808, 1085
AvaII GGWCC 5 cut(s) 153, 158, 280, 1370, 1750
BaeGI GKGCMC 1 cut(s) 257
BalI TGGCCA 1 cut(s) 866
BanI GGYRCC 4 cut(s) 323, 464, 745, 1882
BanII GRGCYC 6 cut(s) 257, 603, 672, 1086, 1603, 1693
BbsI GAAGAC 2 cut(s) 1485, 1974
Bbv12I GWGCWC 4 cut(s) 603, 1086, 1603, 1693
BbvCI CCTCAGC 1 cut(s) 1887
BbvI GCAGC 5 cut(s) 163, 348, 1411, 1450, 1491
BccI CCATC 4 cut(s) 1016, 1157, 1921, 2015
BceAI ACGGC 5 cut(s) 148, 337, 452, 493, 733
BciT130I CCWGG 1 cut(s) 828
BciVI GTATCC 1 cut(s) 1586
BclI TGATCA 1 cut(s) 1807
BcnI CCSGG 5 cut(s) 376, 949, 1100, 1374, 1565
BcoDI GTCTC 5 cut(s) 230, 440, 687, 906, 1610
BfaI CTAG 2 cut(s) 1436, 2027
BfoI RGCGCY 2 cut(s) 468, 1464
BfuAI ACCTGC 2 cut(s) 255, 1761
BfuI GTATCC 1 cut(s) 1586
BglI GCCNNNNNGGC 1 cut(s) 321
BglII AGATCT 1 cut(s) 1952
BlpI GCTNAGC 1 cut(s) 273
Bme1390I CCNGG 6 cut(s) 376, 828, 949, 1100, 1374, 1565
Bme18I GGWCC 5 cut(s) 153, 158, 280, 1370, 1750
BmeT110I CYCGRG 2 cut(s) 808, 1085
BmgBI CACGTC 2 cut(s) 93, 1645
BmgT120I GGNCC 8 cut(s) 153, 158, 253, 254, 280, 1101, 1370, 1750
BmrFI CCNGG 6 cut(s) 376, 828, 949, 1100, 1374, 1565
BmsI GCATC 4 cut(s) 185, 489, 789, 1186
BmtI GCTAGC 1 cut(s) 2030
BpiI GAAGAC 2 cut(s) 1485, 1974
BplI GAGNNNNNCTC 2 cut(s) 1942, 1974
BpmI CTGGAG 3 cut(s) 500, 849, 1815
Bpu10I CCTNAGC 6 cut(s) 28, 337, 491, 1296, 1605, 1887
Bpu1102I GCTNAGC 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 341, 1175
BpuMI CCSGG 5 cut(s) 376, 949, 1100, 1374, 1565
BsaHI GRCGYC 1 cut(s) 465
BsaI GGTCTC 3 cut(s) 230, 906, 1610
BsaJI CCNNGG 7 cut(s) 51, 130, 460, 723, 794, 1104, 1429
BsaWI WCCGGW 4 cut(s) 155, 707, 1041, 1065
Bsc4I CCNNNNNNNGG 9 cut(s) 180, 420, 724, 954, 1105, 1267, 1581, 1726, 2022
Bse118I RCCGGY 3 cut(s) 495, 533, 691
Bse1I ACTGG 2 cut(s) 155, 1798
Bse3DI GCAATG 1 cut(s) 1575
BseBI CCWGG 1 cut(s) 828
BseDI CCNNGG 7 cut(s) 51, 130, 460, 723, 794, 1104, 1429
BseGI GGATG 3 cut(s) 456, 1201, 1735
BseLI CCNNNNNNNGG 9 cut(s) 180, 420, 724, 954, 1105, 1267, 1581, 1726, 2022
BseMI GCAATG 1 cut(s) 1575
BseMII CTCAG 6 cut(s) 287, 482, 643, 1596, 1811, 1901
BseNI ACTGG 2 cut(s) 155, 1798
BseRI GAGGAG 9 cut(s) 61, 491, 518, 1316, 1748, 1751, 1853, 1856, 1947
BseSI GKGCMC 1 cut(s) 257
BseXI GCAGC 5 cut(s) 163, 348, 1411, 1450, 1491
BseYI CCCAGC 1 cut(s) 758
BsgI GTGCAG 1 cut(s) 331
Bsh1236I CGCG 3 cut(s) 462, 1368, 1431
Bsh1285I CGRYCG 3 cut(s) 738, 933, 1066
BshFI GGCC 4 cut(s) 255, 866, 1103, 1903
BshNI GGYRCC 4 cut(s) 323, 464, 745, 1882
BsiEI CGRYCG 3 cut(s) 738, 933, 1066
BsiHKAI GWGCWC 4 cut(s) 603, 1086, 1603, 1693
BsiHKCI CYCGRG 2 cut(s) 808, 1085
BslFI GGGAC 4 cut(s) 455, 1039, 1150, 1534
BslI CCNNNNNNNGG 9 cut(s) 180, 420, 724, 954, 1105, 1267, 1581, 1726, 2022
BsmAI GTCTC 5 cut(s) 230, 440, 687, 906, 1610
BsmBI CGTCTC 2 cut(s) 440, 687
BsmFI GGGAC 4 cut(s) 455, 1039, 1150, 1534
BsnI GGCC 4 cut(s) 255, 866, 1103, 1903
Bso31I GGTCTC 3 cut(s) 230, 906, 1610
BsoBI CYCGRG 2 cut(s) 808, 1085
Bsp120I GGGCCC 1 cut(s) 253
Bsp1286I GDGCHC 6 cut(s) 257, 603, 672, 1086, 1603, 1693
Bsp1407I TGTACA 3 cut(s) 1143, 1169, 1647
Bsp143I GATC 6 cut(s) 396, 540, 930, 1404, 1807, 1952
Bsp1720I GCTNAGC 1 cut(s) 273
BspANI GGCC 4 cut(s) 255, 866, 1103, 1903
BspCNI CTCAG 6 cut(s) 286, 483, 642, 1597, 1812, 1900
BspFNI CGCG 3 cut(s) 462, 1368, 1431
BspHI TCATGA 2 cut(s) 1357, 1447
BspMI ACCTGC 2 cut(s) 255, 1761
BspOI GCTAGC 1 cut(s) 2030
BspPI GGATC 3 cut(s) 391, 535, 1412
BspT107I GGYRCC 4 cut(s) 323, 464, 745, 1882
BspTNI GGTCTC 3 cut(s) 230, 906, 1610
BsrBI CCGCTC 2 cut(s) 144, 259
BsrDI GCAATG 1 cut(s) 1575
BsrFI RCCGGY 3 cut(s) 495, 533, 691
BsrGI TGTACA 3 cut(s) 1143, 1169, 1647
BsrI ACTGG 2 cut(s) 155, 1798
BssAI RCCGGY 3 cut(s) 495, 533, 691
BssECI CCNNGG 7 cut(s) 51, 130, 460, 723, 794, 1104, 1429
BssMI GATC 6 cut(s) 396, 540, 930, 1404, 1807, 1952
BssNI GRCGYC 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 828
Bst4CI ACNGT 6 cut(s) 328, 745, 1019, 1141, 1520, 1548
Bst6I CTCTTC 6 cut(s) 79, 947, 953, 1178, 1446, 1779
BstACI GRCGYC 1 cut(s) 465
BstAUI TGTACA 3 cut(s) 1143, 1169, 1647
BstDSI CCRYGG 3 cut(s) 130, 460, 1429
BstF5I GGATG 3 cut(s) 456, 1201, 1735
BstFNI CGCG 3 cut(s) 462, 1368, 1431
BstH2I RGCGCY 2 cut(s) 468, 1464
BstHHI GCGC 4 cut(s) 173, 467, 908, 1463
BstKTI GATC 6 cut(s) 399, 543, 933, 1407, 1810, 1955
BstMAI GTCTC 5 cut(s) 230, 440, 687, 906, 1610
BstMBI GATC 6 cut(s) 396, 540, 930, 1404, 1807, 1952
BstMCI CGRYCG 3 cut(s) 738, 933, 1066
BstNI CCWGG 1 cut(s) 828
BstNSI RCATGY 1 cut(s) 1878
BstSCI CCNGG 6 cut(s) 374, 826, 947, 1098, 1372, 1563
BstSLI GKGCMC 1 cut(s) 257
BstUI CGCG 3 cut(s) 462, 1368, 1431
BstV1I GCAGC 5 cut(s) 163, 348, 1411, 1450, 1491
BstV2I GAAGAC 2 cut(s) 1485, 1974
BstX2I RGATCY 3 cut(s) 396, 540, 1952
BstYI RGATCY 3 cut(s) 396, 540, 1952
BsuI GTATCC 1 cut(s) 1586
BsuRI GGCC 4 cut(s) 255, 866, 1103, 1903
BtgI CCRYGG 3 cut(s) 130, 460, 1429
BtrI CACGTC 2 cut(s) 93, 1645
BtsCI GGATG 3 cut(s) 456, 1201, 1735
BtsIMutI CAGTG 1 cut(s) 1024
BveI ACCTGC 2 cut(s) 255, 1761
CciI TCATGA 2 cut(s) 1357, 1447
CfoI GCGC 4 cut(s) 173, 467, 908, 1463
Cfr10I RCCGGY 3 cut(s) 495, 533, 691
Cfr13I GGNCC 8 cut(s) 153, 158, 253, 254, 280, 1101, 1370, 1750
Cfr42I CCGCGG 2 cut(s) 463, 1432
CpoI CGGWCCG 1 cut(s) 1370
Csp6I GTAC 6 cut(s) 1144, 1170, 1472, 1648, 1702, 1825
CspCI CAANNNNNGTGG 2 cut(s) 991, 1026
CspI CGGWCCG 1 cut(s) 1370
CviAII CATG 7 cut(s) 180, 1358, 1448, 1478, 1726, 1862, 1875
CviQI GTAC 6 cut(s) 1144, 1170, 1472, 1648, 1702, 1825
DinI GGCGCC 1 cut(s) 466
DpnI GATC 6 cut(s) 398, 542, 932, 1406, 1809, 1954
DpnII GATC 6 cut(s) 396, 540, 930, 1404, 1807, 1952
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 6 cut(s) 79, 947, 953, 1178, 1446, 1779
EarI CTCTTC 6 cut(s) 79, 947, 953, 1178, 1446, 1779
EciI GGCGGA 3 cut(s) 101, 278, 1124
Ecl136II GAGCTC 4 cut(s) 601, 1084, 1601, 1691
Eco147I AGGCCT 1 cut(s) 1903
Eco24I GRGCYC 6 cut(s) 257, 603, 672, 1086, 1603, 1693
Eco31I GGTCTC 3 cut(s) 230, 906, 1610
Eco47I GGWCC 5 cut(s) 153, 158, 280, 1370, 1750
Eco47III AGCGCT 1 cut(s) 1462
Eco53kI GAGCTC 4 cut(s) 601, 1084, 1601, 1691
Eco57I CTGAAG 1 cut(s) 593
Eco88I CYCGRG 2 cut(s) 808, 1085
EcoICRI GAGCTC 4 cut(s) 601, 1084, 1601, 1691
EcoO109I RGGNCCY 1 cut(s) 253
EcoRI GAATTC 2 cut(s) 407, 1380
EcoRII CCWGG 1 cut(s) 826
EcoT38I GRGCYC 6 cut(s) 257, 603, 672, 1086, 1603, 1693
EgeI GGCGCC 1 cut(s) 466
EheI GGCGCC 1 cut(s) 466
Esp3I CGTCTC 2 cut(s) 440, 687
FaeI CATG 7 cut(s) 183, 1361, 1451, 1481, 1729, 1865, 1878
FaqI GGGAC 4 cut(s) 455, 1039, 1150, 1534
FatI CATG 7 cut(s) 179, 1357, 1447, 1477, 1725, 1861, 1874
FauI CCCGC 6 cut(s) 243, 264, 408, 494, 1436, 1991
FbaI TGATCA 1 cut(s) 1807
FokI GGATG 3 cut(s) 443, 1208, 1742
FriOI GRGCYC 6 cut(s) 257, 603, 672, 1086, 1603, 1693
FspBI CTAG 2 cut(s) 1436, 2027
GlaI GCGC 4 cut(s) 172, 466, 907, 1462
GsaI CCCAGC 1 cut(s) 762
GsuI CTGGAG 3 cut(s) 500, 849, 1815
HaeII RGCGCY 2 cut(s) 468, 1464
HaeIII GGCC 4 cut(s) 255, 866, 1103, 1903
HhaI GCGC 4 cut(s) 173, 467, 908, 1463
Hin1I GRCGYC 1 cut(s) 465
Hin1II CATG 7 cut(s) 183, 1361, 1451, 1481, 1729, 1865, 1878
Hin6I GCGC 4 cut(s) 171, 465, 906, 1461
HinP1I GCGC 4 cut(s) 171, 465, 906, 1461
HindIII AAGCTT 2 cut(s) 649, 1307
HinfI GANTC 7 cut(s) 189, 216, 263, 823, 1363, 1444, 1979
Hpy166II GTNNAC 5 cut(s) 1144, 1570, 1648, 1750, 1791
Hpy188III TCNNGA 8 cut(s) 296, 437, 517, 810, 1358, 1448, 1604, 1811
Hpy8I GTNNAC 5 cut(s) 1144, 1570, 1648, 1750, 1791
Hpy99I CGWCG 2 cut(s) 224, 479
HpyCH4III ACNGT 6 cut(s) 328, 745, 1019, 1141, 1520, 1548
HpyCH4IV ACGT 2 cut(s) 92, 1644
HpyCH4V TGCA 5 cut(s) 179, 348, 1345, 1466, 1530
HpySE526I ACGT 2 cut(s) 92, 1644
Hsp92I GRCGYC 1 cut(s) 465
Hsp92II CATG 7 cut(s) 183, 1361, 1451, 1481, 1729, 1865, 1878
HspAI GCGC 4 cut(s) 171, 465, 906, 1461
KasI GGCGCC 1 cut(s) 464
KroI GCCGGC 1 cut(s) 495
KroNI GCCGGC 1 cut(s) 497
Ksp22I TGATCA 1 cut(s) 1807
KspI CCGCGG 2 cut(s) 463, 1432
Kzo9I GATC 6 cut(s) 396, 540, 930, 1404, 1807, 1952
Lsp1109I GCAGC 5 cut(s) 163, 348, 1411, 1450, 1491
LweI GCATC 4 cut(s) 185, 489, 789, 1186
MaeI CTAG 2 cut(s) 1436, 2027
MaeII ACGT 2 cut(s) 92, 1644
MaeIII GTNAC 2 cut(s) 687, 1013
MalI GATC 6 cut(s) 398, 542, 932, 1406, 1809, 1954
MbiI CCGCTC 2 cut(s) 144, 259
MboI GATC 6 cut(s) 396, 540, 930, 1404, 1807, 1952
MfeI CAATTG 1 cut(s) 843
MflI RGATCY 3 cut(s) 396, 540, 1952
MhlI GDGCHC 6 cut(s) 257, 603, 672, 1086, 1603, 1693
MlsI TGGCCA 1 cut(s) 866
MluCI AATT 7 cut(s) 407, 611, 635, 843, 856, 1380, 1987
MluNI TGGCCA 1 cut(s) 866
Mly113I GGCGCC 1 cut(s) 465
MlyI GAGTC 4 cut(s) 198, 225, 257, 832
MmeI TCCRAC 5 cut(s) 166, 171, 471, 591, 1650
Mox20I TGGCCA 1 cut(s) 866
MroNI GCCGGC 1 cut(s) 495
MscI TGGCCA 1 cut(s) 866
MseI TTAA 2 cut(s) 582, 1254
MslI CAYNNNNRTG 3 cut(s) 1263, 1482, 1943
Msp20I TGGCCA 1 cut(s) 866
MspA1I CMGCKG 4 cut(s) 176, 277, 462, 1431
MspR9I CCNGG 6 cut(s) 376, 828, 949, 1100, 1374, 1565
MunI CAATTG 1 cut(s) 843
MvaI CCWGG 1 cut(s) 828
MvnI CGCG 3 cut(s) 462, 1368, 1431
NaeI GCCGGC 1 cut(s) 497
NarI GGCGCC 1 cut(s) 465
NciI CCSGG 5 cut(s) 376, 949, 1100, 1374, 1565
NdeII GATC 6 cut(s) 396, 540, 930, 1404, 1807, 1952
NgoMIV GCCGGC 1 cut(s) 495
NheI GCTAGC 1 cut(s) 2026
NlaIII CATG 7 cut(s) 183, 1361, 1451, 1481, 1729, 1865, 1878
NmeAIII GCCGAG 4 cut(s) 32, 704, 819, 1085
NmuCI GTSAC 1 cut(s) 1013
NspI RCATGY 1 cut(s) 1878
PaeI GCATGC 1 cut(s) 1878
PaeR7I CTCGAG 2 cut(s) 808, 1085
PagI TCATGA 2 cut(s) 1357, 1447
PceI AGGCCT 1 cut(s) 1903
PcsI WCGNNNNNNNCGW 4 cut(s) 378, 444, 731, 939
PdiI GCCGGC 1 cut(s) 497
PfeI GAWTC 3 cut(s) 1363, 1444, 1979
PfoI TCCNGGA 1 cut(s) 826
Ple19I CGATCG 1 cut(s) 933
PleI GAGTC 4 cut(s) 197, 224, 257, 831
PluTI GGCGCC 1 cut(s) 468
PpsI GAGTC 4 cut(s) 197, 224, 257, 831
Psp124BI GAGCTC 4 cut(s) 603, 1086, 1603, 1693
Psp6I CCWGG 1 cut(s) 826
PspFI CCCAGC 1 cut(s) 758
PspGI CCWGG 1 cut(s) 826
PspOMI GGGCCC 1 cut(s) 253
PspPI GGNCC 8 cut(s) 153, 158, 253, 254, 280, 1101, 1370, 1750
PspXI VCTCGAGB 1 cut(s) 1085
PsuI RGATCY 3 cut(s) 396, 540, 1952
PvuI CGATCG 1 cut(s) 933
PvuII CAGCTG 1 cut(s) 277
RsaI GTAC 6 cut(s) 1145, 1171, 1473, 1649, 1703, 1826
RsaNI GTAC 6 cut(s) 1144, 1170, 1472, 1648, 1702, 1825
RseI CAYNNNNRTG 3 cut(s) 1263, 1482, 1943
Rsr2I CGGWCCG 1 cut(s) 1370
RsrII CGGWCCG 1 cut(s) 1370
SacI GAGCTC 4 cut(s) 603, 1086, 1603, 1693
SacII CCGCGG 2 cut(s) 463, 1432
SaqAI TTAA 2 cut(s) 582, 1254
Sau3AI GATC 6 cut(s) 396, 540, 930, 1404, 1807, 1952
Sau96I GGNCC 8 cut(s) 153, 158, 253, 254, 280, 1101, 1370, 1750
SchI GAGTC 4 cut(s) 198, 225, 257, 832
ScrFI CCNGG 6 cut(s) 376, 828, 949, 1100, 1374, 1565
SduI GDGCHC 6 cut(s) 257, 603, 672, 1086, 1603, 1693
SfaNI GCATC 4 cut(s) 185, 489, 789, 1186
SfoI GGCGCC 1 cut(s) 466
Sfr274I CTCGAG 2 cut(s) 808, 1085
Sfr303I CCGCGG 2 cut(s) 463, 1432
SgrBI CCGCGG 2 cut(s) 463, 1432
SinI GGWCC 5 cut(s) 153, 158, 280, 1370, 1750
SlaI CTCGAG 2 cut(s) 808, 1085
SmiMI CAYNNNNRTG 3 cut(s) 1263, 1482, 1943
SmlI CTYRAG 4 cut(s) 356, 808, 1085, 1190
SmoI CTYRAG 4 cut(s) 356, 808, 1085, 1190
SphI GCATGC 1 cut(s) 1878
Sse9I AATT 7 cut(s) 407, 611, 635, 843, 856, 1380, 1987
SseBI AGGCCT 1 cut(s) 1903
SspDI GGCGCC 1 cut(s) 464
SspMI CTAG 2 cut(s) 1436, 2027
SstI GAGCTC 4 cut(s) 603, 1086, 1603, 1693
StuI AGGCCT 1 cut(s) 1903
StyD4I CCNGG 6 cut(s) 374, 826, 947, 1098, 1372, 1563
TaaI ACNGT 6 cut(s) 328, 745, 1019, 1141, 1520, 1548
TaiI ACGT 2 cut(s) 95, 1647
TaqI TCGA 9 cut(s) 261, 438, 734, 809, 923, 929, 1062, 1086, 1836
TaqII GACCGA 3 cut(s) 212, 752, 930
TasI AATT 7 cut(s) 407, 611, 635, 843, 856, 1380, 1987
TatI WGTACW 3 cut(s) 1143, 1169, 1647
TauI GCSGC 6 cut(s) 82, 176, 427, 465, 678, 731
TfiI GAWTC 3 cut(s) 1363, 1444, 1979
Tru1I TTAA 2 cut(s) 582, 1254
Tru9I TTAA 2 cut(s) 582, 1254
TscAI CASTG 1 cut(s) 1024
TseFI GTSAC 1 cut(s) 1013
TseI GCWGC 5 cut(s) 176, 361, 1424, 1463, 1504
Tsp45I GTSAC 1 cut(s) 1013
TspDTI ATGAA 5 cut(s) 17, 877, 1346, 1436, 1464
TspGWI ACGGA 2 cut(s) 422, 675
TspRI CASTG 1 cut(s) 1024
VpaK11BI GGWCC 5 cut(s) 153, 158, 280, 1370, 1750
XapI RAATTY 3 cut(s) 407, 635, 1380
XceI RCATGY 1 cut(s) 1878
XcmI CCANNNNNNNNNTGG 1 cut(s) 1582
XhoI CTCGAG 2 cut(s) 808, 1085
XspI CTAG 2 cut(s) 1436, 2027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.