AT3G27490

BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000226
Physical Location & Seq
Reverse (-)
10177892 .. 10180175
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27490.2

Sequence Viewer

Length: 2049 bp
ATGGATACCGCAACCTTCCCGGTTTTTAAATTTCGCGGACATGCGCATGATCTATTCATCGTCAACACTCCTTTTCACCAGTGTGCTGCTTGCGATCGACGGACTGCTGTTGGCTACGGTGTTGGCTATATATGCAATGAATGCGACTTTTCTATTCACCACATTTGTGCATTTTTGTTCAACATACCGGAGATATTCGACCATCCTTCTCATGATGGACATTGTCTTAAACTTCTCACAACCGGAGCTCCTCATCACACCGACCCAAATTGTCATCTCTGCGGTAAATACACCAAGAGCATTCTTTATCATTGCTCTGACTGTAAACTCAATCTGGACATTGATTGCATAAGTCACCACATATTTGCAGCTTCCAAAGACCATCTGCTTGTGTCATGGCACCACCATCCTATACAAATATGTTATACAGATATTTGCGAATTTTGTAATGGGGTTAACGAACTTGGCTGTCACTGCCTTCAGTGCGGGTTTAGGATTCATCTCACATGTGTCCCCGTATTTGACTCACCGGAGATCACTCACCCTTCTCATGTCAGACTCCCTCTTAAGCTTCTCACCGATGGAGCTCCAAATTACACAGACCCAAGATGTCATATATGTGGAGAAGACACTCAGCACTTACTTTATCATTGTGATATTTGTAAATTCAACTTGGATCTGCGGTGTGCGGCAAAAAGCCCTCCACCAATTGCTCTTTCAAATCTAAAGGTCCATGAGCATACACTCACACTCATGCCAAGATTGATCTCCTTCGTTTGTGATGCTTGTGGGACGGAAGGTGACCGTTCTCCTTACATCTGTGTTCAATGTGATTTCATGATTTTCCATCAAAAGTGTGCTCAATTACCACGTGTCATTCATGTCAATCACCATGACCATCGCATTTCGTACAAGTATCCTCTTGGTCCTGGAGAATGGAGATGTGGAGTTTGTTGGGAAGAGATTGATTGGTCATATGGGGCTTATCCATGCTCTCTTTGTCCTAATTATGCTATTCATTCACTGTGTGCAACAAGGAAAGATGTATGGGATGGAAAAGAGCTTGATGAAGTACCTGAAGAAGTTGAAGATATTGAGCCATTTAAGAGGAATGATGACAACACGATCACTCATTTCGCTCATGAACATAACCTCATGAGCCTCGGAAAAGACGGTGAAGAAGGCAGTTATTGTGGAGCATGTGCTCGTCCCATCAGTTCTTACACATTCTACAAGTGTTCAAGATCAGATTGCAGTTTCATTCTCCATGAAACGTGTGCTAATTTACGCAAGAAGAAACGACATTTTCTGAGCCCAGAACAGCTAGTTATATCTCAATGGAAAAACTATGGTAACTTCCCTAAATGGTGTGACGCTTGTCTTCTAGTTTGCTCTGAAGGATTTGTGTATGGTGTGATGTTTGATTTAGTATGCAGTTCCATTGATGTACCTTTTATCCATGAAAGTCATCCTCATCATTTACTCTACCTTAAACTACAAGACGGCCACTTTAAGACTTGCCAGAGCTGTGGCATCGATCATACTAAAGTCGTCATAGGTTGCCTCAAGTGCAATTATTTTTTGGATTTTCATTGTGCCACACTACCGTTAACAGTCAGTCTTCCCAGATACGATGATCATCCGCTCACTCTCTGTTATGGTGAAAAGGCGAGCGGCAAATATTGGTGTGATATTTGTGAAAGAGAAACGAATCCAGAGACTTGGTTCTACACTGGTTTAGAAAGCGGGGTCACTTTGCATATTTTATGTGTACTTGGGGATATCAGGTACGCCAAACCAGGAGGAAATATCTGTGAGGGGTTTGAATTGCAACTTAACAGTAGTTCTACACGACCAATTTGTCTCAACTGTAAATGTCGTTGCCCAGGTACCTTTTTTATTAATTTTGTTGGCTACGGCGAGGATCATGATGGCTACAACGTGTTCTTCTGTTCTTTTTATTGTTTAAAACATGTCATATTTCGTTATAGCAACGACTATCATATCATGTGCCCTCCATGGGTTAAGAAGTTAGAACTCAAGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2

Protein Analysis

682

Amino Acids

77.88

Weight (kDa)

6.22

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 14 - 57 6.5e-06 C1 domain
C1_2 PF03107 154 - 201 3.8e-08 C1 domain
C1_2 PF03107 215 - 258 1.3e-11 C1 domain
C1_2 PF03107 268 - 315 1.4e-08 C1 domain
C1_2 PF03107 351 - 398 2.5e-10 C1 domain
C1_2 PF03107 514 - 562 1.4e-09 C1 domain
C1-like_CT PF22926 579 - 627 2.7e-11 C1 domain-like, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1860
Acc16I TGCGCA 1 cut(s) 45
Acc65I GGTACC 1 cut(s) 1889
AccB1I GGYRCC 2 cut(s) 399, 1889
AccBSI CCGCTC 2 cut(s) 1645, 1674
AccII CGCG 1 cut(s) 36
AciI CCGC 9 cut(s) 9, 36, 282, 486, 682, 689, 1643, 1674, 1746
AclWI GGATC 2 cut(s) 684, 1932
AcoI YGGCCR 1 cut(s) 1504
AcsI RAATTY 3 cut(s) 29, 440, 665
AcuI CTGAAG 3 cut(s) 464, 1098, 1416
AcvI CACGTG 1 cut(s) 872
AdeI CACNNNGTG 1 cut(s) 1028
AfaI GTAC 6 cut(s) 911, 1074, 1449, 1773, 1790, 1891
AfiI CCNNNNNNNGG 1 cut(s) 2020
AflII CTTAAG 1 cut(s) 566
AflIII ACRYGT 5 cut(s) 506, 871, 1274, 1941, 1972
AgsI TTSAA 7 cut(s) 181, 670, 720, 827, 1088, 1242, 1826
AjnI CCWGG 3 cut(s) 928, 1798, 1885
AjuI GAANNNNNNNTTGG 2 cut(s) 700, 732
AleI CACNNNNGTG 2 cut(s) 81, 165
AluBI AGCT 7 cut(s) 248, 371, 571, 587, 1063, 1324, 1527
AluI AGCT 7 cut(s) 248, 371, 571, 587, 1063, 1324, 1527
Alw21I GWGCWC 4 cut(s) 250, 589, 862, 1207
Alw26I GTCTC 2 cut(s) 1712, 1868
AlwI GGATC 2 cut(s) 684, 1932
AoxI GGCC 1 cut(s) 1504
ApeKI GCWGC 2 cut(s) 86, 368
ApoI RAATTY 3 cut(s) 29, 440, 665
AseI ATTAAT 1 cut(s) 1902
Asp718I GGTACC 1 cut(s) 1889
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 2 cut(s) 730, 926
AsuC2I CCSGG 1 cut(s) 20
AvaII GGWCC 2 cut(s) 730, 926
BaeGI GKGCMC 1 cut(s) 2015
BanI GGYRCC 2 cut(s) 399, 1889
BanII GRGCYC 3 cut(s) 250, 589, 1316
BbrPI CACGTG 1 cut(s) 872
BbsI GAAGAC 3 cut(s) 633, 1373, 1613
Bbv12I GWGCWC 4 cut(s) 250, 589, 862, 1207
BbvI GCAGC 2 cut(s) 73, 380
BceAI ACGGC 2 cut(s) 1519, 1933
BciT130I CCWGG 3 cut(s) 930, 1800, 1887
BciVI GTATCC 1 cut(s) 927
BclI TGATCA 1 cut(s) 1636
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 1712, 1868
BfaI CTAG 2 cut(s) 1325, 1385
BfrI CTTAAG 1 cut(s) 566
BfuI GTATCC 1 cut(s) 927
BisI GCNGC 4 cut(s) 87, 369, 690, 1675
BlsI GCNGC 4 cut(s) 88, 370, 691, 1676
Bme1390I CCNGG 4 cut(s) 20, 930, 1800, 1887
Bme18I GGWCC 2 cut(s) 730, 926
BmgT120I GGNCC 2 cut(s) 730, 926
BmiI GGNNCC 2 cut(s) 401, 1891
BmrFI CCNGG 4 cut(s) 20, 930, 1800, 1887
BmsI GCATC 2 cut(s) 772, 1542
BoxI GACNNNNGTC 1 cut(s) 1377
BpiI GAAGAC 3 cut(s) 633, 1373, 1613
BpmI CTGGAG 1 cut(s) 951
BpuEI CTTGAG 2 cut(s) 1550, 2024
BpuMI CCSGG 1 cut(s) 20
Bsa29I ATCGAT 1 cut(s) 1536
BsaAI YACGTR 1 cut(s) 872
BsaBI GATNNNNATC 1 cut(s) 1638
BsaJI CCNNGG 3 cut(s) 1162, 1885, 2018
BsaWI WCCGGW 3 cut(s) 187, 242, 529
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 1 cut(s) 2020
Bse1I ACTGG 2 cut(s) 79, 1738
Bse3DI GCAATG 2 cut(s) 142, 310
Bse8I GATNNNNATC 1 cut(s) 1638
BseBI CCWGG 3 cut(s) 930, 1800, 1887
BseCI ATCGAT 1 cut(s) 1536
BseDI CCNNGG 3 cut(s) 1162, 1885, 2018
BseGI GGATG 5 cut(s) 202, 406, 1057, 1468, 1639
BseJI GATNNNNATC 1 cut(s) 1638
BseLI CCNNNNNNNGG 1 cut(s) 2020
BseMI GCAATG 2 cut(s) 142, 310
BseMII CTCAG 2 cut(s) 647, 1301
BseNI ACTGG 2 cut(s) 79, 1738
BseRI GAGGAG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 2015
BseXI GCAGC 2 cut(s) 73, 380
Bsh1236I CGCG 1 cut(s) 36
Bsh1285I CGRYCG 1 cut(s) 97
BshFI GGCC 1 cut(s) 1506
BshNI GGYRCC 2 cut(s) 399, 1889
BshVI ATCGAT 1 cut(s) 1536
BsiEI CGRYCG 1 cut(s) 97
BsiHKAI GWGCWC 4 cut(s) 250, 589, 862, 1207
BsiSI CCGG 4 cut(s) 20, 188, 243, 530
BslFI GGGAC 3 cut(s) 497, 805, 1194
BslI CCNNNNNNNGG 1 cut(s) 2020
BsmAI GTCTC 2 cut(s) 1712, 1868
BsmFI GGGAC 3 cut(s) 497, 805, 1194
BsmI GAATGC 2 cut(s) 146, 300
BsnI GGCC 1 cut(s) 1506
Bsp1286I GDGCHC 6 cut(s) 250, 589, 862, 1207, 1316, 2015
Bsp19I CCATGG 1 cut(s) 2018
BspACI CCGC 9 cut(s) 9, 36, 282, 486, 682, 689, 1643, 1674, 1746
BspANI GGCC 1 cut(s) 1506
BspCNI CTCAG 2 cut(s) 646, 1302
BspDI ATCGAT 1 cut(s) 1536
BspFNI CGCG 1 cut(s) 36
BspHI TCATGA 5 cut(s) 211, 837, 1141, 1155, 1927
BspLI GGNNCC 2 cut(s) 401, 1891
BspPI GGATC 2 cut(s) 684, 1932
BspT107I GGYRCC 2 cut(s) 399, 1889
BspTI CTTAAG 1 cut(s) 566
BsrBI CCGCTC 2 cut(s) 1645, 1674
BsrDI GCAATG 2 cut(s) 142, 310
BsrI ACTGG 2 cut(s) 79, 1738
BssECI CCNNGG 3 cut(s) 1162, 1885, 2018
BssT1I CCWWGG 1 cut(s) 2018
Bst2UI CCWGG 3 cut(s) 930, 1800, 1887
Bst4CI ACNGT 9 cut(s) 119, 323, 806, 1026, 1175, 1608, 1615, 1841, 1871
Bst6I CTCTTC 1 cut(s) 954
BstAFI CTTAAG 1 cut(s) 566
BstAPI GCANNNNNTGC 1 cut(s) 141
BstBAI YACGTR 1 cut(s) 872
BstC8I GCNNGC 2 cut(s) 91, 1672
BstDEI CTNAG 2 cut(s) 633, 1310
BstDSI CCRYGG 1 cut(s) 2018
BstEII GGTNACC 1 cut(s) 800
BstF5I GGATG 5 cut(s) 202, 406, 1057, 1468, 1639
BstFNI CGCG 1 cut(s) 36
BstHHI GCGC 1 cut(s) 46
BstMAI GTCTC 2 cut(s) 1712, 1868
BstMCI CGRYCG 1 cut(s) 97
BstMWI GCNNNNNNNGC 5 cut(s) 132, 141, 474, 483, 1569
BstNI CCWGG 3 cut(s) 930, 1800, 1887
BstNSI RCATGY 4 cut(s) 44, 510, 1203, 1976
BstPAI GACNNNNGTC 1 cut(s) 1377
BstPI GGTNACC 1 cut(s) 800
BstSCI CCNGG 4 cut(s) 18, 928, 1798, 1885
BstSLI GKGCMC 1 cut(s) 2015
BstUI CGCG 1 cut(s) 36
BstV1I GCAGC 2 cut(s) 73, 380
BstV2I GAAGAC 3 cut(s) 633, 1373, 1613
BstX2I RGATCY 1 cut(s) 676
BstXI CCANNNNNNTGG 2 cut(s) 1529, 1722
BstYI RGATCY 1 cut(s) 676
Bsu15I ATCGAT 1 cut(s) 1536
BsuI GTATCC 1 cut(s) 927
BsuRI GGCC 1 cut(s) 1506
BsuTUI ATCGAT 1 cut(s) 1536
BtgI CCRYGG 1 cut(s) 2018
BtgZI GCGATG 1 cut(s) 884
BtsCI GGATG 5 cut(s) 202, 406, 1057, 1468, 1639
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 5 cut(s) 86, 472, 488, 1022, 1731
Cac8I GCNNGC 2 cut(s) 91, 1672
CciI TCATGA 5 cut(s) 211, 837, 1141, 1155, 1927
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 730, 926
ClaI ATCGAT 1 cut(s) 1536
CseI GACGC 1 cut(s) 1382
Csp6I GTAC 6 cut(s) 910, 1073, 1448, 1772, 1789, 1890
CviQI GTAC 6 cut(s) 910, 1073, 1448, 1772, 1789, 1890
DdeI CTNAG 2 cut(s) 633, 1310
DraI TTTAAA 2 cut(s) 28, 1968
DraIII CACNNNGTG 1 cut(s) 1028
DrdI GACNNNNNNGTC 1 cut(s) 1860
DseDI GACNNNNNNGTC 1 cut(s) 1860
EaeI YGGCCR 1 cut(s) 1504
Eam1104I CTCTTC 1 cut(s) 954
EarI CTCTTC 1 cut(s) 954
Ecl136II GAGCTC 2 cut(s) 248, 587
Eco130I CCWWGG 1 cut(s) 2018
Eco24I GRGCYC 3 cut(s) 250, 589, 1316
Eco32I GATATC 1 cut(s) 1783
Eco47I GGWCC 2 cut(s) 730, 926
Eco53kI GAGCTC 2 cut(s) 248, 587
Eco57I CTGAAG 3 cut(s) 464, 1098, 1416
Eco72I CACGTG 1 cut(s) 872
Eco91I GGTNACC 1 cut(s) 800
EcoICRI GAGCTC 2 cut(s) 248, 587
EcoO65I GGTNACC 1 cut(s) 800
EcoRII CCWGG 3 cut(s) 928, 1798, 1885
EcoRV GATATC 1 cut(s) 1783
EcoT14I CCWWGG 1 cut(s) 2018
EcoT38I GRGCYC 3 cut(s) 250, 589, 1316
ErhI CCWWGG 1 cut(s) 2018
FaqI GGGAC 3 cut(s) 497, 805, 1194
FauI CCCGC 2 cut(s) 479, 1739
FauNDI CATATG 1 cut(s) 976
FbaI TGATCA 1 cut(s) 1636
Fnu4HI GCNGC 4 cut(s) 87, 369, 690, 1675
FokI GGATG 5 cut(s) 189, 393, 1064, 1455, 1626
FriOI GRGCYC 3 cut(s) 250, 589, 1316
Fsp4HI GCNGC 4 cut(s) 87, 369, 690, 1675
FspAI RTGCGCAY 1 cut(s) 45
FspBI CTAG 2 cut(s) 1325, 1385
FspI TGCGCA 1 cut(s) 45
GlaI GCGC 1 cut(s) 45
GluI GCNGC 4 cut(s) 87, 369, 690, 1675
GsuI CTGGAG 1 cut(s) 951
HaeIII GGCC 1 cut(s) 1506
HapII CCGG 4 cut(s) 20, 188, 243, 530
HgaI GACGC 1 cut(s) 1382
HhaI GCGC 1 cut(s) 46
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 3 cut(s) 64, 457, 1611
HindII GTYRAC 3 cut(s) 64, 457, 1611
HindIII AAGCTT 1 cut(s) 569
HinfI GANTC 4 cut(s) 496, 524, 558, 1711
HpaI GTTAAC 2 cut(s) 457, 1611
HpaII CCGG 4 cut(s) 20, 188, 243, 530
Hpy166II GTNNAC 5 cut(s) 64, 326, 457, 1611, 1772
Hpy188I TCNGA 6 cut(s) 319, 557, 1166, 1249, 1311, 1396
Hpy188III TCNNGA 9 cut(s) 212, 335, 838, 1142, 1156, 1242, 1715, 1928, 2041
Hpy8I GTNNAC 5 cut(s) 64, 326, 457, 1611, 1772
Hpy99I CGWCG 1 cut(s) 102
HpyAV CCTTC 8 cut(s) 25, 216, 488, 555, 781, 791, 1175, 1391
HpyCH4III ACNGT 9 cut(s) 119, 323, 806, 1026, 1175, 1608, 1615, 1841, 1871
HpyCH4IV ACGT 3 cut(s) 871, 1274, 1941
HpyF10VI GCNNNNNNNGC 5 cut(s) 132, 141, 474, 483, 1569
HpyF3I CTNAG 2 cut(s) 633, 1310
HpySE526I ACGT 3 cut(s) 871, 1274, 1941
HspAI GCGC 1 cut(s) 44
KpnI GGTACC 1 cut(s) 1893
Ksp22I TGATCA 1 cut(s) 1636
KspAI GTTAAC 2 cut(s) 457, 1611
LmnI GCTCC 5 cut(s) 245, 253, 584, 592, 1196
Lsp1109I GCAGC 2 cut(s) 73, 380
LweI GCATC 2 cut(s) 772, 1542
MaeI CTAG 2 cut(s) 1325, 1385
MaeII ACGT 3 cut(s) 871, 1274, 1941
MaeIII GTNAC 6 cut(s) 353, 470, 800, 1352, 1370, 1750
MbiI CCGCTC 2 cut(s) 1645, 1674
MboII GAAGA 9 cut(s) 638, 971, 1091, 1100, 1190, 1306, 1373, 1613, 1939
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 1 cut(s) 676
MhlI GDGCHC 6 cut(s) 250, 589, 862, 1207, 1316, 2015
MlyI GAGTC 2 cut(s) 518, 552
MslI CAYNNNNRTG 5 cut(s) 45, 81, 165, 618, 752
MspCI CTTAAG 1 cut(s) 566
MspI CCGG 4 cut(s) 20, 188, 243, 530
MspR9I CCNGG 4 cut(s) 20, 930, 1800, 1887
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 2 cut(s) 146, 300
MvaI CCWGG 3 cut(s) 930, 1800, 1887
MvnI CGCG 1 cut(s) 36
MwoI GCNNNNNNNGC 5 cut(s) 132, 141, 474, 483, 1569
NciI CCSGG 1 cut(s) 20
NcoI CCATGG 1 cut(s) 2018
NdeI CATATG 1 cut(s) 976
NlaIV GGNNCC 2 cut(s) 401, 1891
NmuCI GTSAC 5 cut(s) 353, 470, 800, 1370, 1750
NsbI TGCGCA 1 cut(s) 45
NspI RCATGY 4 cut(s) 44, 510, 1203, 1976
OliI CACNNNNGTG 2 cut(s) 81, 165
PagI TCATGA 5 cut(s) 211, 837, 1141, 1155, 1927
PciI ACATGT 2 cut(s) 506, 1972
PctI GAATGC 2 cut(s) 146, 300
PfeI GAWTC 2 cut(s) 496, 1711
PflFI GACNNNGTC 1 cut(s) 222
PfoI TCCNGGA 1 cut(s) 928
PkrI GCNGC 4 cut(s) 88, 370, 691, 1676
Ple19I CGATCG 1 cut(s) 97
PleI GAGTC 2 cut(s) 518, 552
PmaCI CACGTG 1 cut(s) 872
PmlI CACGTG 1 cut(s) 872
PpsI GAGTC 2 cut(s) 518, 552
Ppu21I YACGTR 1 cut(s) 872
PscI ACATGT 2 cut(s) 506, 1972
PshAI GACNNNNGTC 1 cut(s) 1377
PshBI ATTAAT 1 cut(s) 1902
Psp124BI GAGCTC 2 cut(s) 250, 589
Psp6I CCWGG 3 cut(s) 928, 1798, 1885
PspCI CACGTG 1 cut(s) 872
PspEI GGTNACC 1 cut(s) 800
PspGI CCWGG 3 cut(s) 928, 1798, 1885
PspN4I GGNNCC 2 cut(s) 401, 1891
PspPI GGNCC 2 cut(s) 730, 926
PsuI RGATCY 1 cut(s) 676
PsyI GACNNNGTC 1 cut(s) 222
PvuI CGATCG 1 cut(s) 97
RsaI GTAC 6 cut(s) 911, 1074, 1449, 1773, 1790, 1891
RsaNI GTAC 6 cut(s) 910, 1073, 1448, 1772, 1789, 1890
RseI CAYNNNNRTG 5 cut(s) 45, 81, 165, 618, 752
SacI GAGCTC 2 cut(s) 250, 589
SatI GCNGC 4 cut(s) 87, 369, 690, 1675
Sau96I GGNCC 2 cut(s) 730, 926
SchI GAGTC 2 cut(s) 518, 552
ScrFI CCNGG 4 cut(s) 20, 930, 1800, 1887
SduI GDGCHC 6 cut(s) 250, 589, 862, 1207, 1316, 2015
SfaNI GCATC 2 cut(s) 772, 1542
SinI GGWCC 2 cut(s) 730, 926
SmiMI CAYNNNNRTG 5 cut(s) 45, 81, 165, 618, 752
SmlI CTYRAG 3 cut(s) 566, 1565, 2039
SmoI CTYRAG 3 cut(s) 566, 1565, 2039
SsiI CCGC 9 cut(s) 9, 36, 282, 486, 682, 689, 1643, 1674, 1746
SspI AATATT 1 cut(s) 1682
SspMI CTAG 2 cut(s) 1325, 1385
SstI GAGCTC 2 cut(s) 250, 589
StyD4I CCNGG 4 cut(s) 18, 928, 1798, 1885
StyI CCWWGG 1 cut(s) 2018
TaaI ACNGT 9 cut(s) 119, 323, 806, 1026, 1175, 1608, 1615, 1841, 1871
TaiI ACGT 3 cut(s) 874, 1277, 1944
TaqI TCGA 3 cut(s) 97, 198, 1536
TatI WGTACW 1 cut(s) 1771
TauI GCSGC 2 cut(s) 692, 1677
TfiI GAWTC 2 cut(s) 496, 1711
TscAI CASTG 5 cut(s) 86, 479, 488, 1029, 1738
TseFI GTSAC 5 cut(s) 353, 470, 800, 1370, 1750
TseI GCWGC 2 cut(s) 86, 368
Tsp45I GTSAC 5 cut(s) 353, 470, 800, 1370, 1750
TspGWI ACGGA 2 cut(s) 115, 809
TspRI CASTG 5 cut(s) 86, 479, 488, 1029, 1738
Tth111I GACNNNGTC 1 cut(s) 222
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 2 cut(s) 730, 926
VspI ATTAAT 1 cut(s) 1902
XapI RAATTY 3 cut(s) 29, 440, 665
XceI RCATGY 4 cut(s) 44, 510, 1203, 1976
XspI CTAG 2 cut(s) 1325, 1385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.