Rh3DG258300

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000226
Physical Location & Seq
Reverse (-)
25539734 .. 25540597
864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG258300.1

Sequence Viewer

Length: 864 bp
ATGGATCAGCTTCAACATTTCGGTCACGTCCATCCATTGATGTTTAAGGAAGGGGAGCAGAAAAACGAAGATGGTGCAGCAGCAAGTCCACCAGTTGATTGTTCTAAGTGTGGGGATCCAGTACTTAGTCCTAGCTACAGTTGCAACCAGTGTTCCGAATTATTCATCCTCCACAAGTCATGTGCGTTGCTGCCCCGTATGATGCACCACCCGATACACCGCAAACATCTACTTGTTCTCGTCCCAGATAGGACTAATTACATTTGTGATATTTGTGGCAATGGGCATTCCAGCTCATTCGGTTACACATGTGAGCAAGATGGCTTCGATCTTGACCTCCAATGTGCTCTCAATTTGAGTAACACAAAATTCTTGGAACACTTCAGTCATCGGCATGCACTGATGTTTATGGAAGAACCCAAAAGAGAAAGCAAGGATTCACTAGTTGTTTGTAGTGGGTGCCGAGAGCAAGTGATTGGTCCAAGCTACTGTTGCAGCCTGTTACAATGCTACTACACTCTCCATAAGTCATGTGCAGAGCTGCCCCGTGAGATGCACCACCCGAAACACGTCAAATATCCACTTGTTCTCTTCTCACATAGAGATCATCGTTGTCATTTTTGTGACAAATTGCGTACCAACATATTCTCTTACACATGTGAGCAATGTGACTTCGAGCTTGACCTCCAATGTGCTTCCAATTCGAGTGACATAAAATGCTTGGAGCACTTCAGTCATGAGCGTGCACTGATGTTTATGGAAGAACCCAAAAGAAAAAGCAAGGATTCACTAGTTGTTTGTGATGGGTGCCAAGAGCAAGTGTTTGGTCCAAGCTATTGTTGCAGCCAGTTTCATTGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

287

Amino Acids

32.99

Weight (kDa)

6.24

Isoelectric Point (pI)

46.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 8 - 62 6.7e-06 C1 domain
C1_2 PF03107 72 - 116 1.2e-07 C1 domain
C1_2 PF03107 128 - 179 5.4e-06 C1 domain
C1_2 PF03107 189 - 232 3.8e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 459, 807
AciI CCGC 1 cut(s) 220
AclWI GGATC 3 cut(s) 12, 110, 123
AcsI RAATTY 1 cut(s) 368
AcuI CTGAAG 2 cut(s) 367, 715
AfaI GTAC 2 cut(s) 123, 637
AflIII ACRYGT 3 cut(s) 308, 568, 656
AgsI TTSAA 1 cut(s) 14
AhlI ACTAGT 2 cut(s) 442, 790
AjiI CACGTC 2 cut(s) 28, 571
AluBI AGCT 7 cut(s) 10, 135, 294, 486, 541, 679, 834
AluI AGCT 7 cut(s) 10, 135, 294, 486, 541, 679, 834
Alw21I GWGCWC 3 cut(s) 349, 729, 748
Alw44I GTGCAC 1 cut(s) 744
AlwI GGATC 3 cut(s) 12, 110, 123
ApaLI GTGCAC 1 cut(s) 744
ApeKI GCWGC 6 cut(s) 77, 80, 190, 495, 541, 843
ApoI RAATTY 1 cut(s) 368
AspS9I GGNCC 2 cut(s) 479, 827
AvaII GGWCC 2 cut(s) 479, 827
BaeGI GKGCMC 1 cut(s) 748
BamHI GGATCC 1 cut(s) 115
BanI GGYRCC 2 cut(s) 459, 807
Bbv12I GWGCWC 3 cut(s) 349, 729, 748
BbvI GCAGC 6 cut(s) 89, 92, 177, 507, 528, 855
BccI CCATC 4 cut(s) 39, 65, 314, 797
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcuI ACTAGT 2 cut(s) 442, 790
BfaI CTAG 4 cut(s) 132, 443, 791, 862
BfmI CTRYAG 1 cut(s) 136
BisI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
BlsI GCNGC 6 cut(s) 79, 82, 192, 497, 543, 845
BmcAI AGTACT 1 cut(s) 123
Bme18I GGWCC 2 cut(s) 479, 827
BmgBI CACGTC 2 cut(s) 28, 571
BmgT120I GGNCC 2 cut(s) 479, 827
BmiI GGNNCC 3 cut(s) 117, 461, 809
BmsI GCATC 2 cut(s) 192, 543
Bse1I ACTGG 4 cut(s) 92, 119, 148, 847
Bse3DI GCAATG 3 cut(s) 286, 671, 853
BseGI GGATG 2 cut(s) 31, 165
BseMI GCAATG 3 cut(s) 286, 671, 853
BseNI ACTGG 4 cut(s) 92, 119, 148, 847
BseSI GKGCMC 1 cut(s) 748
BseXI GCAGC 6 cut(s) 89, 92, 177, 507, 528, 855
BsgI GTGCAG 2 cut(s) 96, 555
BshNI GGYRCC 2 cut(s) 459, 807
BsiHKAI GWGCWC 3 cut(s) 349, 729, 748
BslFI GGGAC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 227
BsmI GAATGC 1 cut(s) 286
Bsp1286I GDGCHC 3 cut(s) 349, 729, 748
Bsp143I GATC 4 cut(s) 4, 115, 328, 604
BspACI CCGC 1 cut(s) 220
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 3 cut(s) 117, 461, 809
BspPI GGATC 3 cut(s) 12, 110, 123
BspT107I GGYRCC 2 cut(s) 459, 807
BsrDI GCAATG 3 cut(s) 286, 671, 853
BsrI ACTGG 4 cut(s) 92, 119, 148, 847
BssMI GATC 4 cut(s) 4, 115, 328, 604
Bst4CI ACNGT 2 cut(s) 140, 491
Bst6I CTCTTC 1 cut(s) 596
BstC8I GCNNGC 2 cut(s) 396, 744
BstDEI CTNAG 2 cut(s) 105, 125
BstF5I GGATG 2 cut(s) 31, 165
BstKTI GATC 4 cut(s) 7, 118, 331, 607
BstMBI GATC 4 cut(s) 4, 115, 328, 604
BstMWI GCNNNNNNNGC 3 cut(s) 141, 492, 840
BstNSI RCATGY 3 cut(s) 312, 398, 660
BstSFI CTRYAG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 748
BstV1I GCAGC 6 cut(s) 89, 92, 177, 507, 528, 855
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtrI CACGTC 2 cut(s) 28, 571
BtsCI GGATG 2 cut(s) 31, 165
BtsIMutI CAGTG 3 cut(s) 155, 398, 746
Cac8I GCNNGC 2 cut(s) 396, 744
CciI TCATGA 1 cut(s) 736
Cfr13I GGNCC 2 cut(s) 479, 827
Csp6I GTAC 2 cut(s) 122, 636
CviAII CATG 6 cut(s) 180, 309, 395, 531, 657, 737
CviQI GTAC 2 cut(s) 122, 636
DdeI CTNAG 2 cut(s) 105, 125
DpnI GATC 4 cut(s) 6, 117, 330, 606
DpnII GATC 4 cut(s) 4, 115, 328, 604
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
Eco47I GGWCC 2 cut(s) 479, 827
Eco57I CTGAAG 2 cut(s) 367, 715
FaeI CATG 6 cut(s) 183, 312, 398, 534, 660, 740
FaqI GGGAC 1 cut(s) 227
FatI CATG 6 cut(s) 179, 308, 394, 530, 656, 736
Fnu4HI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
FokI GGATG 2 cut(s) 18, 152
Fsp4HI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
FspBI CTAG 4 cut(s) 132, 443, 791, 862
GluI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
Hin1II CATG 6 cut(s) 183, 312, 398, 534, 660, 740
HinfI GANTC 2 cut(s) 437, 785
Hpy166II GTNNAC 2 cut(s) 89, 746
Hpy188I TCNGA 1 cut(s) 157
Hpy188III TCNNGA 2 cut(s) 332, 737
Hpy8I GTNNAC 2 cut(s) 89, 746
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 2 cut(s) 140, 491
HpyCH4IV ACGT 2 cut(s) 27, 570
HpyCH4V TGCA 9 cut(s) 77, 144, 205, 398, 495, 536, 556, 746, 843
HpyF10VI GCNNNNNNNGC 3 cut(s) 141, 492, 840
HpyF3I CTNAG 2 cut(s) 105, 125
HpySE526I ACGT 2 cut(s) 27, 570
Hsp92II CATG 6 cut(s) 183, 312, 398, 534, 660, 740
Kzo9I GATC 4 cut(s) 4, 115, 328, 604
LmnI GCTCC 2 cut(s) 55, 724
LpnPI CCDG 7 cut(s) 105, 132, 161, 258, 304, 512, 860
Lsp1109I GCAGC 6 cut(s) 89, 92, 177, 507, 528, 855
LweI GCATC 2 cut(s) 192, 543
MaeI CTAG 4 cut(s) 132, 443, 791, 862
MaeII ACGT 2 cut(s) 27, 570
MaeIII GTNAC 7 cut(s) 23, 302, 359, 501, 623, 668, 707
MalI GATC 4 cut(s) 6, 117, 330, 606
MboI GATC 4 cut(s) 4, 115, 328, 604
MboII GAAGA 4 cut(s) 80, 425, 583, 773
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 3 cut(s) 349, 729, 748
MluCI AATT 6 cut(s) 158, 256, 352, 368, 629, 700
MnlI CCTC 3 cut(s) 179, 347, 695
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 3 cut(s) 393, 621, 741
Mva1269I GAATGC 1 cut(s) 286
MwoI GCNNNNNNNGC 3 cut(s) 141, 492, 840
NdeII GATC 4 cut(s) 4, 115, 328, 604
NlaIII CATG 6 cut(s) 183, 312, 398, 534, 660, 740
NlaIV GGNNCC 3 cut(s) 117, 461, 809
NmeAIII GCCGAG 1 cut(s) 488
NmuCI GTSAC 4 cut(s) 23, 623, 668, 707
NspI RCATGY 3 cut(s) 312, 398, 660
PaeI GCATGC 1 cut(s) 398
PagI TCATGA 1 cut(s) 736
PciI ACATGT 2 cut(s) 308, 656
PctI GAATGC 1 cut(s) 286
PfeI GAWTC 2 cut(s) 437, 785
PkrI GCNGC 6 cut(s) 79, 82, 192, 497, 543, 845
PscI ACATGT 2 cut(s) 308, 656
PspN4I GGNNCC 3 cut(s) 117, 461, 809
PspPI GGNCC 2 cut(s) 479, 827
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 2 cut(s) 123, 637
RsaNI GTAC 2 cut(s) 122, 636
RseI CAYNNNNRTG 3 cut(s) 393, 621, 741
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 6 cut(s) 78, 81, 191, 496, 542, 844
Sau3AI GATC 4 cut(s) 4, 115, 328, 604
Sau96I GGNCC 2 cut(s) 479, 827
ScaI AGTACT 1 cut(s) 123
SduI GDGCHC 3 cut(s) 349, 729, 748
SfaNI GCATC 2 cut(s) 192, 543
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 2 cut(s) 479, 827
SmiMI CAYNNNNRTG 3 cut(s) 393, 621, 741
SpeI ACTAGT 2 cut(s) 442, 790
SphI GCATGC 1 cut(s) 398
Sse9I AATT 6 cut(s) 158, 256, 352, 368, 629, 700
SsiI CCGC 1 cut(s) 220
SspMI CTAG 4 cut(s) 132, 443, 791, 862
TaaI ACNGT 2 cut(s) 140, 491
TaiI ACGT 2 cut(s) 30, 573
TaqI TCGA 3 cut(s) 327, 675, 704
TaqII GACCGA 1 cut(s) 11
TasI AATT 6 cut(s) 158, 256, 352, 368, 629, 700
TatI WGTACW 1 cut(s) 121
TfiI GAWTC 2 cut(s) 437, 785
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 3 cut(s) 155, 405, 753
TseFI GTSAC 4 cut(s) 23, 623, 668, 707
TseI GCWGC 6 cut(s) 77, 80, 190, 495, 541, 843
Tsp45I GTSAC 4 cut(s) 23, 623, 668, 707
TspDTI ATGAA 2 cut(s) 154, 842
TspRI CASTG 3 cut(s) 155, 405, 753
VneI GTGCAC 1 cut(s) 744
VpaK11BI GGWCC 2 cut(s) 479, 827
XapI RAATTY 1 cut(s) 368
XceI RCATGY 3 cut(s) 312, 398, 660
XspI CTAG 4 cut(s) 132, 443, 791, 862
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.