Prupe.7G078300_v2.0.a1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000226
Physical Location & Seq
Reverse (-)
11422076 .. 11427084
5009 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G078300.1

Sequence Viewer

Length: 3432 bp
ATGGAGCTTCAACATTTCAGTCACAAGCATCCCTTGACGTACAAGGAAGAGCAGAAGAAAGAAGATGGTCGACTAGTTTTTTGCAATGCATGCGGGGATCCTGTGCTTGGCCCTAGCTACACTTGCAACAAGTATCCTCCTGGCTTCACTCTCCATAAATCATGTGCCGAGCTACCCCGTGAGATCGAACACCCTTTGCACCGCAAACACCCACTTGTTCTCCTCACACCTACAAAATACACTTGTGCTGCCTGTGACCAACGTTACAAAGCCAGCTTGGCTTATAATTGTTCTTTATGCCATTTCAACCTTGACCTCAAATGTGCTTCCAATTGGCAAAATATTATTGAAAATGATCGTCACGAGCACACATTCACCATCTTTCGGAAGCGAATAAAATTCAATTGTGATGCTTGTGGATCATATGGGAATGGTATCCCTTACTTTTGCAGCATCTGCCAGCTCCTAGTCCACAAGAGATGCACTCCTTCGTTACCACGCGACATCAAAATAACCGGGCACCAACACTCTCTCATGCTCACATGGTCCCTTGAAGAAATTCGCCGAAGCAACCCATTTTGCAAAGTATGCTATACGAGCATGAAAAAGCATCGTGCCGTTTATTCTTGTCAATGCTGCGGTTATGTTGCCCACACTAAATGTGCAACACATGAGAGCTTCCGTGATGTTACAACCACCGACATTGTTGAGGATCAGTCGAAAAATATGATACTTGGAGCGTCCCAGCAGATCAACATGGTGGAGTACCAAAGAGAATTAGCTGAACATCAAATCAAACACTTTAGTCATCAACATCTCTTAGCCCTGAATGATGAGGTTAAAGATGAAGACAATAAATCCCGTACTTGCGATGGTTGCATCGGGCCCATCACTAACGCATATTATAGTTGTACAGAAAATGAACGTTGCCATTTCTTCCTCCACAAAACATGTGCTCAATTACCTACAAAGCTGCTTCACCCACTTCACCCACTTCCTCTTACACTGCTCCCATGGGCTCCTTCTACTGACCGTGTGTTCTGGTGTCACTTGTGCAGGAACCTTTGCCAAGGCTTTGCATACTACTGTAGCAAATTTGACTTATACTTTGACCTTGAGTGCATTTCGCTTTCAGAGTCCCTTACACATGAGTTTTATGAAGATCGCCTCTTTTTCAACAGAAGCTGGGAGAAGTACTACAACTATTGCCATGGTTGTGATACATCTATTGGAGAAACTTTTGCTCGCTTCAGTTCTCTGACAAATGACGGCTATCATGATATCTTCAATTTTTGTATCCAATGTGTTAAGGTACCTTTGACTGCTAAGCACAGATATGACGATCATCCTCTCAAACTCATCTTTAAAAGAGATGGTTATTGTGAAATATGTGAAGGAAAACAATATGAACGAGAATGGTTGTACTCATGCGAGGATTGTGACTTTGATTGCCATACTTATTGCATTCTGGGGAGGTATCCCAAAGTCAAGTTAGGGAGTACTTTCAAGATTAGTGCTCACCCACACCTAGTCACCCTCATCGATAAGAGAAAGAGCGTCATTCCTTTCGATAAGAGAAGTAGCATTCTTCCTTGTCAATTGTGCGGTGGACCTTGCGAAGGATTGGTCTTTGAATGCTCTAAGTGTCATGTAAATATCCACCGATCAGAATTATATTGTATAGGGAGAGAAAATGAGCTTAACAAATTGCAGCGTCCCTGCATATTCACGGAACTGCAACCTAATCAGTATGGTCGACTGGTTTTTTGCAATATGTGCGGTGACCCGGTCGTTGGCCCTGGCTATAATGGAAACAAAGATCCTCCCAACCTCACTCTCCATAAATCATGTGCAAAGCTACCCCGTGAGATTCAACATCCAATGCACCGGAAGCACCCACTTATTCTTCGCAAACCTAGATACTACTCGATGACTAAGTGTGATGTATGTTCCCAACGCTGTAGAGACAACCATACTTACACTTGTTCCCAATGTGACTTCAACCTTGACCTCAAATGTGCTTCCAATTGGCGAAACATTGGAAATTATGACTGCCATGACCACCAATTCACCGTCCTTCGGAAGCGAATGAAATTCACTTGCGATGCATGTAACAAACATGGGAATGGTGTCGCTTATCTCTGCAGCATCTGCCAGCTTTTGGTCCATGAGGAATGCACTTCGTTACCACGCCAGATCAGAATAACTGCGCACCAACACCCTCTCGTGCTCAAGTGGTCCTTTGGGGTGGTTCAGCCCCGGAATCAATTCTGCAGAGTCTGCCACAAACCCATGAAGAAAGAAAGAGCTGTATATTCTTGTCAACATTGCAGTTGCATTGCTCACAATAGATGCGTAATGAAGGAGGACGTTCGAAATGAAATAATTGCGCTGGAGAAAGAAAGGCATGGCCATACAACTACCAAAATCGTTGACGATGAGTCTAAAGCTACGATGCTTGGTGAGGCCCAGCAGGGCGACGACCGGATAGAATTAGCTGCACAAATCAAACACTTTAGTCATCAGCATTTTTTGGTCCTGAGAGATGAAGTGCAAAAAGATGATAGAATTACTTGTGACGGTTGCATCGAACCGATCACAGATGCCTTTTATAGCTGTACAAAACAAGAAGAAGATGATTGTCATTTCTTTCTCCACAAGACATGTGCTCAATTACCAACGGAGAGGCTTCACCCATTTCACCCACACTTGCTCAAACTCCTCCCAAAGGCACCGTCTACGGATGGCATGTTCGAGTGCCATGCATGCAGCAGCTTTAGCCACGGCTTCCTCTACAGCTGTGAAAGATGCCAGTTCTACCTTGACCTCCAATGCAATACTCTTTCCAACTCTCTTACACATCCGGCTCATAGACACCCCCTCACCTTCAACACAAAGGATGACAAGGGGCAGTCCTACATATCGTCAATAAGAGGCATATTAAGAAGGAGCAACCCTTCTTGTCGAGGTTGTGGTGATTATAGTCAACCAGCTGTCCGCTTCAGTTGTGTCAACTGCAATTTTCATCTGTGTATCCAATGCATTCAACTACCTCTTACCGCAAGTCACAGGTATGACAATCATCCTCTCAAGCTCACACATCGTCGGGTTAAACATGAACTGGGAGAATGTTATTGTCAAATATGCGAAGGAGAACGAGACTCAACACATTGGTTTTATTACTGCAAAGATTGTGACTTCGATTGTCATCCTCATTGCGTTGTTGGGAGGTATCGCCATGTCAAGTTAGGGAGCACTTACAAGCATGCTCACCAACACCTTGTCACCCTTGTTGAGAAGAAAAAGAGCGTCATTCCTTTTGATAAGAGAGATAACATTCTACCTTGTGAGGCATGTGGTAAACCTTGTGAAGGATTGGTGTTTGAGTGTTCTCAGTGTAACATCAATATCCACCGAACAGGATACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

1144

Amino Acids

132.59

Weight (kDa)

8.24

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
Acc16I TGCGCA 1 cut(s) 2211
Acc65I GGTACC 1 cut(s) 1312
AccB1I GGYRCC 3 cut(s) 519, 1312, 2731
AccB7I CCANNNNNTGG 1 cut(s) 2161
AccI GTMKAC 3 cut(s) 70, 1756, 2738
AccII CGCG 1 cut(s) 501
AciI CCGC 7 cut(s) 93, 202, 639, 1605, 1779, 2998, 3060
AclI AACGTT 2 cut(s) 262, 925
AclWI GGATC 5 cut(s) 92, 105, 427, 720, 1814
AcoI YGGCCR 1 cut(s) 2410
AcsI RAATTY 4 cut(s) 398, 558, 1094, 2093
AcuI CTGAAG 2 cut(s) 1234, 2986
AfaI GTAC 9 cut(s) 41, 767, 865, 913, 1196, 1314, 1424, 1501, 2620
AfiI CCNNNNNNNGG 8 cut(s) 107, 384, 1619, 1793, 2079, 2161, 2728, 3371
AflIII ACRYGT 2 cut(s) 950, 2663
AhdI GACNNNNNGTC 1 cut(s) 2440
AhlI ACTAGT 1 cut(s) 73
AjnI CCWGG 2 cut(s) 139, 1798
AloI GAACNNNNNNTCC 2 cut(s) 2735, 2767
Alw21I GWGCWC 6 cut(s) 369, 958, 1519, 2232, 2671, 3257
Alw26I GTCTC 2 cut(s) 1959, 3153
AlwI GGATC 5 cut(s) 92, 105, 427, 720, 1814
AlwNI CAGNNNCTG 4 cut(s) 456, 1185, 2151, 2280
AoxI GGCC 5 cut(s) 109, 884, 1795, 2410, 2466
ApaI GGGCCC 1 cut(s) 888
ApeKI GCWGC 9 cut(s) 248, 450, 636, 973, 1711, 2145, 2498, 2769, 2772
ApoI RAATTY 4 cut(s) 398, 558, 1094, 2093
Asp700I GAANNNNTTC 2 cut(s) 558, 2267
Asp718I GGTACC 1 cut(s) 1312
AspLEI GCGC 2 cut(s) 2212, 2392
AsuC2I CCSGG 3 cut(s) 517, 1787, 2260
AsuII TTCGAA 1 cut(s) 2374
AvaII GGWCC 5 cut(s) 546, 1610, 2164, 2238, 2536
BaeGI GKGCMC 2 cut(s) 522, 888
BalI TGGCCA 1 cut(s) 2412
BamHI GGATCC 1 cut(s) 97
BanI GGYRCC 3 cut(s) 519, 1312, 2731
BanII GRGCYC 2 cut(s) 888, 1021
BauI CACGAG 2 cut(s) 362, 2225
BbsI GAAGAC 1 cut(s) 855
Bbv12I GWGCWC 6 cut(s) 369, 958, 1519, 2232, 2671, 3257
BbvI GCAGC 9 cut(s) 235, 462, 623, 960, 1723, 2157, 2485, 2781, 2784
BccI CCATC 6 cut(s) 59, 386, 866, 896, 1367, 2738
BceAI ACGGC 3 cut(s) 602, 1285, 2800
BcgI CGANNNNNNTGC 2 cut(s) 2744, 2778
BciT130I CCWGG 2 cut(s) 141, 1800
BciVI GTATCC 6 cut(s) 144, 446, 1307, 1488, 3044, 3416
BcnI CCSGG 3 cut(s) 517, 1787, 2260
BcoDI GTCTC 2 cut(s) 1959, 3153
BcuI ACTAGT 1 cut(s) 73
BfaI CTAG 5 cut(s) 74, 114, 467, 1529, 1917
BfmI CTRYAG 5 cut(s) 1087, 1960, 2143, 2272, 2794
BfuI GTATCC 6 cut(s) 144, 446, 1307, 1488, 3044, 3416
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 9 cut(s) 249, 451, 637, 974, 1712, 2146, 2499, 2770, 2773
BlpI GCTNAGC 1 cut(s) 1326
BlsI GCNGC 9 cut(s) 250, 452, 638, 975, 1713, 2147, 2500, 2771, 2774
BmcAI AGTACT 2 cut(s) 1196, 1501
Bme1390I CCNGG 5 cut(s) 141, 517, 1787, 1800, 2260
Bme18I GGWCC 5 cut(s) 546, 1610, 2164, 2238, 2536
BmeRI GACNNNNNGTC 1 cut(s) 2440
BmiI GGNNCC 8 cut(s) 99, 521, 548, 886, 1020, 1061, 1314, 2733
BmrFI CCNGG 5 cut(s) 141, 517, 1787, 1800, 2260
BmrI ACTGGG 1 cut(s) 3131
BmuI ACTGGG 1 cut(s) 3131
BpiI GAAGAC 1 cut(s) 855
BplI GAGNNNNNCTC 2 cut(s) 469, 501
BpmI CTGGAG 1 cut(s) 2414
Bpu1102I GCTNAGC 1 cut(s) 1326
Bpu14I TTCGAA 1 cut(s) 2374
BpuEI CTTGAG 3 cut(s) 1136, 2216, 3074
BpuMI CCSGG 3 cut(s) 517, 1787, 2260
Bsa29I ATCGAT 1 cut(s) 1542
BsaBI GATNNNNATC 1 cut(s) 3207
BsaJI CCNNGG 6 cut(s) 1013, 1069, 1210, 1798, 2258, 2782
BsaWI WCCGGW 2 cut(s) 1887, 2484
BsaXI ACNNNNNCTCC 2 cut(s) 204, 234
Bsc4I CCNNNNNNNGG 8 cut(s) 107, 384, 1619, 1793, 2079, 2161, 2728, 3371
Bse1I ACTGG 3 cut(s) 1764, 2812, 3126
Bse3DI GCAATG 4 cut(s) 91, 2326, 2337, 3214
Bse8I GATNNNNATC 1 cut(s) 3207
BseBI CCWGG 2 cut(s) 141, 1800
BseCI ATCGAT 1 cut(s) 1542
BseDI CCNNGG 6 cut(s) 1013, 1069, 1210, 1798, 2258, 2782
BseGI GGATG 8 cut(s) 28, 1345, 1876, 2749, 2860, 2905, 3082, 3208
BseJI GATNNNNATC 1 cut(s) 3207
BseLI CCNNNNNNNGG 8 cut(s) 107, 384, 1619, 1793, 2079, 2161, 2728, 3371
BseMI GCAATG 4 cut(s) 91, 2326, 2337, 3214
BseMII CTCAG 2 cut(s) 2531, 3407
BseNI ACTGG 3 cut(s) 1764, 2812, 3126
BseRI GAGGAG 2 cut(s) 212, 2711
BseSI GKGCMC 2 cut(s) 522, 888
BseXI GCAGC 9 cut(s) 235, 462, 623, 960, 1723, 2157, 2485, 2781, 2784
BseYI CCCAGC 3 cut(s) 744, 1185, 2469
BsgI GTGCAG 2 cut(s) 1075, 2484
Bsh1236I CGCG 1 cut(s) 501
Bsh1285I CGRYCG 2 cut(s) 1791, 2485
BshFI GGCC 5 cut(s) 111, 886, 1797, 2412, 2468
BshNI GGYRCC 3 cut(s) 519, 1312, 2731
BshVI ATCGAT 1 cut(s) 1542
BsiEI CGRYCG 2 cut(s) 1791, 2485
BsiHKAI GWGCWC 6 cut(s) 369, 958, 1519, 2232, 2671, 3257
BsiSI CCGG 6 cut(s) 516, 1787, 1888, 2260, 2485, 2864
BslFI GGGAC 4 cut(s) 532, 727, 1123, 1701
BslI CCNNNNNNNGG 8 cut(s) 107, 384, 1619, 1793, 2079, 2161, 2728, 3371
BsmAI GTCTC 2 cut(s) 1959, 3153
BsmFI GGGAC 4 cut(s) 532, 727, 1123, 1701
BsmI GAATGC 5 cut(s) 1464, 1584, 1640, 2180, 3042
BsnI GGCC 5 cut(s) 111, 886, 1797, 2412, 2468
Bsp119I TTCGAA 1 cut(s) 2374
Bsp120I GGGCCC 1 cut(s) 884
Bsp1286I GDGCHC 9 cut(s) 369, 522, 888, 958, 1021, 1519, 2232, 2671, 3257
Bsp1407I TGTACA 2 cut(s) 911, 2618
Bsp1720I GCTNAGC 1 cut(s) 1326
Bsp19I CCATGG 2 cut(s) 1013, 1210
BspACI CCGC 7 cut(s) 93, 202, 639, 1605, 1779, 2998, 3060
BspANI GGCC 5 cut(s) 111, 886, 1797, 2412, 2468
BspCNI CTCAG 2 cut(s) 2532, 3406
BspDI ATCGAT 1 cut(s) 1542
BspFNI CGCG 1 cut(s) 501
BspHI TCATGA 1 cut(s) 1276
BspLI GGNNCC 8 cut(s) 99, 521, 548, 886, 1020, 1061, 1314, 2733
BspMAI CTGCAG 2 cut(s) 2147, 2276
BspPI GGATC 5 cut(s) 92, 105, 427, 720, 1814
BspQI GCTCTTC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 2374
BspT107I GGYRCC 3 cut(s) 519, 1312, 2731
BsrDI GCAATG 4 cut(s) 91, 2326, 2337, 3214
BsrGI TGTACA 2 cut(s) 911, 2618
BsrI ACTGG 3 cut(s) 1764, 2812, 3126
BssECI CCNNGG 6 cut(s) 1013, 1069, 1210, 1798, 2258, 2782
BssSI CACGAG 2 cut(s) 362, 2225
BssT1I CCWWGG 3 cut(s) 1013, 1069, 1210
Bst2BI CACGAG 2 cut(s) 362, 2225
Bst2UI CCWGG 2 cut(s) 141, 1800
Bst4CI ACNGT 6 cut(s) 1034, 1088, 2074, 2582, 2736, 3428
Bst6I CTCTTC 1 cut(s) 42
BstAPI GCANNNNNTGC 6 cut(s) 90, 456, 588, 1776, 2151, 2280
BstAUI TGTACA 2 cut(s) 911, 2618
BstBI TTCGAA 1 cut(s) 2374
BstC8I GCNNGC 7 cut(s) 91, 274, 461, 1246, 2156, 2767, 3267
BstDEI CTNAG 6 cut(s) 820, 1326, 1641, 1935, 2540, 3393
BstDSI CCRYGG 3 cut(s) 1013, 1210, 2782
BstEII GGTNACC 1 cut(s) 1781
BstENI CCTNNNNNAGG 3 cut(s) 1617, 2726, 3369
BstF5I GGATG 8 cut(s) 28, 1345, 1876, 2749, 2860, 2905, 3082, 3208
BstFNI CGCG 1 cut(s) 501
BstHHI GCGC 2 cut(s) 2212, 2392
BstMAI GTCTC 2 cut(s) 1959, 3153
BstMCI CGRYCG 2 cut(s) 1791, 2485
BstNI CCWGG 2 cut(s) 141, 1800
BstNSI RCATGY 8 cut(s) 93, 954, 2112, 2667, 2752, 2769, 3269, 3357
BstPI GGTNACC 1 cut(s) 1781
BstSCI CCNGG 5 cut(s) 139, 515, 1785, 1798, 2258
BstSFI CTRYAG 5 cut(s) 1087, 1960, 2143, 2272, 2794
BstSLI GKGCMC 2 cut(s) 522, 888
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 9 cut(s) 235, 462, 623, 960, 1723, 2157, 2485, 2781, 2784
BstV2I GAAGAC 1 cut(s) 855
BstX2I RGATCY 2 cut(s) 97, 1819
BstYI RGATCY 2 cut(s) 97, 1819
Bsu15I ATCGAT 1 cut(s) 1542
BsuI GTATCC 6 cut(s) 144, 446, 1307, 1488, 3044, 3416
BsuRI GGCC 5 cut(s) 111, 886, 1797, 2412, 2468
BsuTUI ATCGAT 1 cut(s) 1542
BtgI CCRYGG 3 cut(s) 1013, 1210, 2782
BtgZI GCGATG 2 cut(s) 885, 2118
BtsCI GGATG 8 cut(s) 28, 1345, 1876, 2749, 2860, 2905, 3082, 3208
BtsI GCAGTG 1 cut(s) 1004
BtsIMutI CAGTG 2 cut(s) 1004, 3401
Cac8I GCNNGC 7 cut(s) 91, 274, 461, 1246, 2156, 2767, 3267
CaiI CAGNNNCTG 4 cut(s) 456, 1185, 2151, 2280
CciI TCATGA 1 cut(s) 1276
CfoI GCGC 2 cut(s) 2212, 2392
ClaI ATCGAT 1 cut(s) 1542
CseI GACGC 4 cut(s) 729, 1546, 1703, 3298
Csp6I GTAC 9 cut(s) 40, 766, 864, 912, 1195, 1313, 1423, 1500, 2619
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviQI GTAC 9 cut(s) 40, 766, 864, 912, 1195, 1313, 1423, 1500, 2619
DdeI CTNAG 6 cut(s) 820, 1326, 1641, 1935, 2540, 3393
DraI TTTAAA 1 cut(s) 1366
DriI GACNNNNNGTC 1 cut(s) 2440
EaeI YGGCCR 1 cut(s) 2410
Eam1104I CTCTTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 2440
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 3 cut(s) 1013, 1069, 1210
Eco24I GRGCYC 2 cut(s) 888, 1021
Eco32I GATATC 1 cut(s) 1282
Eco47I GGWCC 5 cut(s) 546, 1610, 2164, 2238, 2536
Eco57I CTGAAG 2 cut(s) 1234, 2986
Eco91I GGTNACC 1 cut(s) 1781
EcoNI CCTNNNNNAGG 3 cut(s) 1617, 2726, 3369
EcoO65I GGTNACC 1 cut(s) 1781
EcoRII CCWGG 2 cut(s) 139, 1798
EcoRV GATATC 1 cut(s) 1282
EcoT14I CCWWGG 3 cut(s) 1013, 1069, 1210
EcoT22I ATGCAT 4 cut(s) 91, 2110, 2767, 3044
EcoT38I GRGCYC 2 cut(s) 888, 1021
ErhI CCWWGG 3 cut(s) 1013, 1069, 1210
FalI AAGNNNNNCTT 4 cut(s) 17, 49, 2225, 2257
FaqI GGGAC 4 cut(s) 532, 727, 1123, 1701
FauI CCCGC 1 cut(s) 86
FauNDI CATATG 1 cut(s) 424
FblI GTMKAC 3 cut(s) 70, 1756, 2738
Fnu4HI GCNGC 9 cut(s) 249, 451, 637, 974, 1712, 2146, 2499, 2770, 2773
FokI GGATG 8 cut(s) 15, 1332, 1863, 2756, 2847, 2912, 3069, 3195
FriOI GRGCYC 2 cut(s) 888, 1021
Fsp4HI GCNGC 9 cut(s) 249, 451, 637, 974, 1712, 2146, 2499, 2770, 2773
FspBI CTAG 5 cut(s) 74, 114, 467, 1529, 1917
FspI TGCGCA 1 cut(s) 2211
GlaI GCGC 2 cut(s) 2211, 2391
GluI GCNGC 9 cut(s) 249, 451, 637, 974, 1712, 2146, 2499, 2770, 2773
GsaI CCCAGC 3 cut(s) 748, 1189, 2473
GsuI CTGGAG 1 cut(s) 2414
HaeIII GGCC 5 cut(s) 111, 886, 1797, 2412, 2468
HapII CCGG 6 cut(s) 516, 1787, 1888, 2260, 2485, 2864
HgaI GACGC 4 cut(s) 729, 1546, 1703, 3298
HhaI GCGC 2 cut(s) 2212, 2392
Hin6I GCGC 2 cut(s) 2210, 2390
HinP1I GCGC 2 cut(s) 2210, 2390
HincII GTYRAC 6 cut(s) 71, 1757, 2324, 2434, 2987, 3013
HindII GTYRAC 6 cut(s) 71, 1757, 2324, 2434, 2987, 3013
HinfI GANTC 6 cut(s) 1136, 1870, 2263, 2277, 2441, 3161
HpaII CCGG 6 cut(s) 516, 1787, 1888, 2260, 2485, 2864
Hpy188I TCNGA 6 cut(s) 387, 1135, 1260, 1669, 2082, 2201
Hpy188III TCNNGA 4 cut(s) 362, 1277, 1507, 2539
Hpy99I CGWCG 2 cut(s) 2483, 3108
HpyCH4III ACNGT 6 cut(s) 1034, 1088, 2074, 2582, 2736, 3428
HpyCH4IV ACGT 4 cut(s) 38, 262, 925, 2370
HpyF3I CTNAG 6 cut(s) 820, 1326, 1641, 1935, 2540, 3393
HpySE526I ACGT 4 cut(s) 38, 262, 925, 2370
HspAI GCGC 2 cut(s) 2210, 2390
KpnI GGTACC 1 cut(s) 1316
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 7 cut(s) 4, 468, 737, 1014, 1024, 2949, 3252
Lsp1109I GCAGC 9 cut(s) 235, 462, 623, 960, 1723, 2157, 2485, 2781, 2784
MaeI CTAG 5 cut(s) 74, 114, 467, 1529, 1917
MaeII ACGT 4 cut(s) 38, 262, 925, 2370
MfeI CAATTG 4 cut(s) 331, 403, 1598, 2026
MflI RGATCY 2 cut(s) 97, 1819
MhlI GDGCHC 9 cut(s) 369, 522, 888, 958, 1021, 1519, 2232, 2671, 3257
MlsI TGGCCA 1 cut(s) 2412
MluNI TGGCCA 1 cut(s) 2412
MlyI GAGTC 4 cut(s) 1145, 2286, 2450, 3155
MmeI TCCRAC 1 cut(s) 2871
Mox20I TGGCCA 1 cut(s) 2412
Mph1103I ATGCAT 4 cut(s) 91, 2110, 2767, 3044
MroXI GAANNNNTTC 2 cut(s) 558, 2267
MscI TGGCCA 1 cut(s) 2412
MseI TTAA 7 cut(s) 840, 1308, 1365, 1701, 2942, 3111, 3430
MslI CAYNNNNRTG 4 cut(s) 1215, 1335, 2124, 3072
Msp20I TGGCCA 1 cut(s) 2412
MspA1I CMGCKG 2 cut(s) 2799, 2993
MspI CCGG 6 cut(s) 516, 1787, 1888, 2260, 2485, 2864
MspR9I CCNGG 5 cut(s) 141, 517, 1787, 1800, 2260
MunI CAATTG 4 cut(s) 331, 403, 1598, 2026
Mva1269I GAATGC 5 cut(s) 1464, 1584, 1640, 2180, 3042
MvaI CCWGG 2 cut(s) 141, 1800
MvnI CGCG 1 cut(s) 501
NciI CCSGG 3 cut(s) 517, 1787, 2260
NcoI CCATGG 2 cut(s) 1013, 1210
NdeI CATATG 1 cut(s) 424
NlaIV GGNNCC 8 cut(s) 99, 521, 548, 886, 1020, 1061, 1314, 2733
NmeAIII GCCGAG 1 cut(s) 193
NsbI TGCGCA 1 cut(s) 2211
NsiI ATGCAT 4 cut(s) 91, 2110, 2767, 3044
NspI RCATGY 8 cut(s) 93, 954, 2112, 2667, 2752, 2769, 3269, 3357
NspV TTCGAA 1 cut(s) 2374
PaeI GCATGC 3 cut(s) 93, 2769, 3269
PagI TCATGA 1 cut(s) 1276
PciI ACATGT 2 cut(s) 950, 2663
PciSI GCTCTTC 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 2586
PctI GAATGC 5 cut(s) 1464, 1584, 1640, 2180, 3042
PdmI GAANNNNTTC 2 cut(s) 558, 2267
PfeI GAWTC 2 cut(s) 1870, 2263
PflFI GACNNNGTC 1 cut(s) 1787
PflMI CCANNNNNTGG 1 cut(s) 2161
PkrI GCNGC 9 cut(s) 250, 452, 638, 975, 1713, 2147, 2500, 2771, 2774
PleI GAGTC 4 cut(s) 1144, 2285, 2449, 3155
PpsI GAGTC 4 cut(s) 1144, 2285, 2449, 3155
PscI ACATGT 2 cut(s) 950, 2663
PsiI TTATAA 1 cut(s) 285
Psp1406I AACGTT 2 cut(s) 262, 925
Psp6I CCWGG 2 cut(s) 139, 1798
PspEI GGTNACC 1 cut(s) 1781
PspFI CCCAGC 3 cut(s) 744, 1185, 2469
PspGI CCWGG 2 cut(s) 139, 1798
PspN4I GGNNCC 8 cut(s) 99, 521, 548, 886, 1020, 1061, 1314, 2733
PspOMI GGGCCC 1 cut(s) 884
PstI CTGCAG 2 cut(s) 2147, 2276
PstNI CAGNNNCTG 4 cut(s) 456, 1185, 2151, 2280
PsuI RGATCY 2 cut(s) 97, 1819
PsyI GACNNNGTC 1 cut(s) 1787
PvuII CAGCTG 2 cut(s) 2799, 2993
RsaI GTAC 9 cut(s) 41, 767, 865, 913, 1196, 1314, 1424, 1501, 2620
RsaNI GTAC 9 cut(s) 40, 766, 864, 912, 1195, 1313, 1423, 1500, 2619
RseI CAYNNNNRTG 4 cut(s) 1215, 1335, 2124, 3072
SalI GTCGAC 2 cut(s) 69, 1755
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 7 cut(s) 840, 1308, 1365, 1701, 2942, 3111, 3430
SatI GCNGC 9 cut(s) 249, 451, 637, 974, 1712, 2146, 2499, 2770, 2773
ScaI AGTACT 2 cut(s) 1196, 1501
SchI GAGTC 4 cut(s) 1145, 2286, 2450, 3155
ScrFI CCNGG 5 cut(s) 141, 517, 1787, 1800, 2260
SduI GDGCHC 9 cut(s) 369, 522, 888, 958, 1021, 1519, 2232, 2671, 3257
SfcI CTRYAG 5 cut(s) 1087, 1960, 2143, 2272, 2794
SfuI TTCGAA 1 cut(s) 2374
SinI GGWCC 5 cut(s) 546, 1610, 2164, 2238, 2536
SmiMI CAYNNNNRTG 4 cut(s) 1215, 1335, 2124, 3072
SmlI CTYRAG 3 cut(s) 1115, 2231, 3089
SmoI CTYRAG 3 cut(s) 1115, 2231, 3089
SpeI ACTAGT 1 cut(s) 73
SphI GCATGC 3 cut(s) 93, 2769, 3269
SsiI CCGC 7 cut(s) 93, 202, 639, 1605, 1779, 2998, 3060
SspI AATATT 1 cut(s) 343
SspMI CTAG 5 cut(s) 74, 114, 467, 1529, 1917
StyD4I CCNGG 5 cut(s) 139, 515, 1785, 1798, 2258
StyI CCWWGG 3 cut(s) 1013, 1069, 1210
TaaI ACNGT 6 cut(s) 1034, 1088, 2074, 2582, 2736, 3428
TaiI ACGT 4 cut(s) 41, 265, 928, 2373
TatI WGTACW 5 cut(s) 911, 1194, 1422, 1499, 2618
TfiI GAWTC 2 cut(s) 1870, 2263
Tru1I TTAA 7 cut(s) 840, 1308, 1365, 1701, 2942, 3111, 3430
Tru9I TTAA 7 cut(s) 840, 1308, 1365, 1701, 2942, 3111, 3430
TscAI CASTG 2 cut(s) 1011, 3401
TseI GCWGC 9 cut(s) 248, 450, 636, 973, 1711, 2145, 2498, 2769, 2772
TspGWI ACGGA 4 cut(s) 671, 1745, 2696, 2756
TspRI CASTG 2 cut(s) 1011, 3401
Tth111I GACNNNGTC 1 cut(s) 1787
Van91I CCANNNNNTGG 1 cut(s) 2161
VpaK11BI GGWCC 5 cut(s) 546, 1610, 2164, 2238, 2536
XagI CCTNNNNNAGG 3 cut(s) 1617, 2726, 3369
XapI RAATTY 4 cut(s) 398, 558, 1094, 2093
XceI RCATGY 8 cut(s) 93, 954, 2112, 2667, 2752, 2769, 3269, 3357
XmiI GTMKAC 3 cut(s) 70, 1756, 2738
XmnI GAANNNNTTC 2 cut(s) 558, 2267
XspI CTAG 5 cut(s) 74, 114, 467, 1529, 1917
ZrmI AGTACT 2 cut(s) 1196, 1501
Zsp2I ATGCAT 4 cut(s) 91, 2110, 2767, 3044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.