MD14G1060000.v1.1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000226
Physical Location & Seq
Reverse (-)
6331822 .. 6332916
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1060000.v1.1.491

Sequence Viewer

Length: 951 bp
ATGCTACCCATCATGAGGGGTGAGTCTTATAGGTCATGCACAGAACAAGCTATAGAAAAGCCATGTAATTTCTCTCTCCACATAAATTGTGCTAAATTACCCCGAATGAGGCTTCTCCCACTTCACGAACACGAGCTCACACTCCTTCCAAAGGCATCTTTTGTTGGTGGCGTGTTTAAGTGTCACATGTGCGAGTCCTTGAGCCAAGGTTTCTCATACAGTTGTGGAGATTGCGACTTCTACCTGGACCTTTATTGCAGCAGTCTTTATGAGCGTAAGACGATCCTTTGTGATGCTCATGTTCACACCCTCCAGTTCAGCAGACAGCTCGTGTCCTGCAGCAGTTGTGGTACTTGTGATAAGAATTTCTGCTTCAGATGTATCAGTAAGAAATGCGACTTCCGTCTGTGTATTCCTTGTGTTAAATTACCTCTTATAGTCAGGTACAAATACGACAATCATCCTCTCAGACTCACTTATGCTAGTGTTAAAAATGACCTCCATGAGTACTATTGTGACATATGCGAAGGAATACGAGATCGAAAACATTGGTTCTACTCCTGCCCGGATTGTGACTTTGAATGTCATCCTGATTGCATTCGAGGGAGGTATCCGCAAGTCAAGTTAGGGGGCTCTTACAAGCATGATGATCACCAGCACCATGTCGCTCTTGTTGATAAGAGAAAAAGCGCGATTCCTAATGATAAGAGAGAGCGCTTACGTCCGTGTCCCGACTGTCTTAACATGTGCGTAGGATTGGTTTGTGAATGTTTGGAGTGTGGTATTAATATACACCTGGAGCACGAGTGGGCGGCGGATAATAGGGGATTTCTCGAGTTGTTGGCTGACTTGCTTAAGATGTTCATTCCTTCTAATGAGCCCGATAATAATAGCAGTAGATGGCGTCAGGGTATTCACGGTACAGAGTTCAGGGTACCAAAACATGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

317

Amino Acids

36.66

Weight (kDa)

7.69

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 40 - 86 2.9e-08 C1 domain
C1_2 PF03107 151 - 200 7.9e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 934
AccB1I GGYRCC 1 cut(s) 934
AccII CGCG 1 cut(s) 692
AciI CCGC 3 cut(s) 614, 812, 815
AclWI GGATC 1 cut(s) 277
AcsI RAATTY 1 cut(s) 364
AcuI CTGAAG 1 cut(s) 358
AcyI GRCGYC 1 cut(s) 904
AfaI GTAC 5 cut(s) 352, 446, 509, 922, 936
AfeI AGCGCT 1 cut(s) 716
AfiI CCNNNNNNNGG 3 cut(s) 15, 108, 151
AflII CTTAAG 1 cut(s) 854
AflIII ACRYGT 3 cut(s) 186, 744, 943
AgsI TTSAA 1 cut(s) 581
AjnI CCWGG 2 cut(s) 243, 795
AluBI AGCT 3 cut(s) 50, 136, 328
AluI AGCT 3 cut(s) 50, 136, 328
Alw21I GWGCWC 2 cut(s) 138, 804
AlwI GGATC 1 cut(s) 277
Ama87I CYCGRG 1 cut(s) 833
Aor51HI AGCGCT 1 cut(s) 716
ApeKI GCWGC 2 cut(s) 258, 339
ApoI RAATTY 1 cut(s) 364
AseI ATTAAT 1 cut(s) 786
Asp718I GGTACC 1 cut(s) 934
AspLEI GCGC 2 cut(s) 692, 717
AspS9I GGNCC 1 cut(s) 247
AsuC2I CCSGG 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 32, 644
AvaI CYCGRG 1 cut(s) 833
AvaII GGWCC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 934
BanII GRGCYC 3 cut(s) 138, 635, 882
BauI CACGAG 3 cut(s) 131, 329, 803
Bbv12I GWGCWC 2 cut(s) 138, 804
BbvI GCAGC 2 cut(s) 270, 351
BccI CCATC 2 cut(s) 17, 894
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciT130I CCWGG 2 cut(s) 245, 797
BciVI GTATCC 1 cut(s) 621
BclI TGATCA 1 cut(s) 649
BcnI CCSGG 1 cut(s) 566
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 2 cut(s) 51, 337
BfoI RGCGCY 1 cut(s) 718
BfrI CTTAAG 1 cut(s) 854
BfuI GTATCC 1 cut(s) 621
BisI GCNGC 3 cut(s) 259, 340, 813
BlsI GCNGC 3 cut(s) 260, 341, 814
BmcAI AGTACT 1 cut(s) 509
Bme1390I CCNGG 3 cut(s) 245, 566, 797
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 833
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 936
BmrFI CCNGG 3 cut(s) 245, 566, 797
BmsI GCATC 2 cut(s) 164, 283
BoxI GACNNNNGTC 1 cut(s) 402
BpmI CTGGAG 2 cut(s) 296, 818
BpuEI CTTGAG 1 cut(s) 220
BpuMI CCSGG 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 904
BsaJI CCNNGG 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 791, 821
Bsc4I CCNNNNNNNGG 3 cut(s) 15, 108, 151
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 2 cut(s) 245, 797
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 2 cut(s) 460, 586
BseLI CCNNNNNNNGG 3 cut(s) 15, 108, 151
BseMII CTCAG 1 cut(s) 481
BseNI ACTGG 1 cut(s) 313
BseXI GCAGC 2 cut(s) 270, 351
Bsh1236I CGCG 1 cut(s) 692
BshNI GGYRCC 1 cut(s) 934
BsiHKAI GWGCWC 2 cut(s) 138, 804
BsiHKCI CYCGRG 1 cut(s) 833
BsiSI CCGG 1 cut(s) 566
BslFI GGGAC 1 cut(s) 714
BslI CCNNNNNNNGG 3 cut(s) 15, 108, 151
BsmFI GGGAC 1 cut(s) 714
BsmI GAATGC 1 cut(s) 597
BsoBI CYCGRG 1 cut(s) 833
Bsp1286I GDGCHC 4 cut(s) 138, 635, 804, 882
Bsp143I GATC 3 cut(s) 282, 538, 649
BspACI CCGC 3 cut(s) 614, 812, 815
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 1 cut(s) 692
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 936
BspMAI CTGCAG 1 cut(s) 341
BspPI GGATC 1 cut(s) 277
BspT107I GGYRCC 1 cut(s) 934
BspTI CTTAAG 1 cut(s) 854
BsrI ACTGG 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 3 cut(s) 282, 538, 649
BssNI GRCGYC 1 cut(s) 904
BssSI CACGAG 3 cut(s) 131, 329, 803
BssT1I CCWWGG 1 cut(s) 205
Bst2BI CACGAG 3 cut(s) 131, 329, 803
Bst2UI CCWGG 2 cut(s) 245, 797
Bst4CI ACNGT 3 cut(s) 221, 737, 920
BstACI GRCGYC 1 cut(s) 904
BstAFI CTTAAG 1 cut(s) 854
BstDEI CTNAG 1 cut(s) 467
BstENI CCTNNNNNAGG 1 cut(s) 149
BstF5I GGATG 2 cut(s) 460, 586
BstFNI CGCG 1 cut(s) 692
BstH2I RGCGCY 1 cut(s) 718
BstHHI GCGC 2 cut(s) 692, 717
BstKTI GATC 3 cut(s) 285, 541, 652
BstMBI GATC 3 cut(s) 282, 538, 649
BstNI CCWGG 2 cut(s) 245, 797
BstNSI RCATGY 3 cut(s) 190, 748, 947
BstPAI GACNNNNGTC 1 cut(s) 402
BstSCI CCNGG 3 cut(s) 243, 564, 795
BstSFI CTRYAG 2 cut(s) 51, 337
BstUI CGCG 1 cut(s) 692
BstV1I GCAGC 2 cut(s) 270, 351
BsuI GTATCC 1 cut(s) 621
BtsCI GGATG 2 cut(s) 460, 586
CciI TCATGA 1 cut(s) 12
CfoI GCGC 2 cut(s) 692, 717
Cfr13I GGNCC 1 cut(s) 247
CseI GACGC 1 cut(s) 893
Csp6I GTAC 5 cut(s) 351, 445, 508, 921, 935
CspCI CAANNNNNGTGG 2 cut(s) 68, 103
CviJI RGCY 9 cut(s) 50, 61, 112, 136, 204, 328, 633, 845, 880
CviKI_1 RGCY 9 cut(s) 50, 61, 112, 136, 204, 328, 633, 845, 880
CviQI GTAC 5 cut(s) 351, 445, 508, 921, 935
DdeI CTNAG 1 cut(s) 467
DpnI GATC 3 cut(s) 284, 540, 651
DpnII GATC 3 cut(s) 282, 538, 649
EciI GGCGGA 1 cut(s) 830
Ecl136II GAGCTC 1 cut(s) 136
Eco130I CCWWGG 1 cut(s) 205
Eco24I GRGCYC 3 cut(s) 138, 635, 882
Eco47I GGWCC 1 cut(s) 247
Eco47III AGCGCT 1 cut(s) 716
Eco53kI GAGCTC 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 358
Eco88I CYCGRG 1 cut(s) 833
EcoICRI GAGCTC 1 cut(s) 136
EcoNI CCTNNNNNAGG 1 cut(s) 149
EcoRII CCWGG 2 cut(s) 243, 795
EcoT14I CCWWGG 1 cut(s) 205
EcoT38I GRGCYC 3 cut(s) 138, 635, 882
ErhI CCWWGG 1 cut(s) 205
FaqI GGGAC 1 cut(s) 714
FauNDI CATATG 1 cut(s) 521
FbaI TGATCA 1 cut(s) 649
Fnu4HI GCNGC 3 cut(s) 259, 340, 813
FokI GGATG 2 cut(s) 447, 573
FriOI GRGCYC 3 cut(s) 138, 635, 882
Fsp4HI GCNGC 3 cut(s) 259, 340, 813
FspBI CTAG 1 cut(s) 483
GlaI GCGC 2 cut(s) 691, 716
GluI GCNGC 3 cut(s) 259, 340, 813
GsuI CTGGAG 2 cut(s) 296, 818
HaeII RGCGCY 1 cut(s) 718
HapII CCGG 1 cut(s) 566
HgaI GACGC 1 cut(s) 893
HhaI GCGC 2 cut(s) 692, 717
Hin1I GRCGYC 1 cut(s) 904
Hin6I GCGC 2 cut(s) 690, 715
HinP1I GCGC 2 cut(s) 690, 715
HinfI GANTC 4 cut(s) 23, 194, 471, 694
HpaII CCGG 1 cut(s) 566
HphI GGTGA 2 cut(s) 32, 644
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 2 cut(s) 377, 470
Hpy188III TCNNGA 5 cut(s) 13, 125, 590, 731, 833
Hpy8I GTNNAC 1 cut(s) 304
HpyAV CCTTC 3 cut(s) 155, 521, 879
HpyCH4III ACNGT 3 cut(s) 221, 737, 920
HpyCH4IV ACGT 1 cut(s) 721
HpyCH4V TGCA 4 cut(s) 39, 258, 339, 597
HpyF3I CTNAG 1 cut(s) 467
HpySE526I ACGT 1 cut(s) 721
Hsp92I GRCGYC 1 cut(s) 904
HspAI GCGC 2 cut(s) 690, 715
KpnI GGTACC 1 cut(s) 938
Ksp22I TGATCA 1 cut(s) 649
Kzo9I GATC 3 cut(s) 282, 538, 649
LmnI GCTCC 1 cut(s) 799
Lsp1109I GCAGC 2 cut(s) 270, 351
LweI GCATC 2 cut(s) 164, 283
MaeI CTAG 1 cut(s) 483
MaeII ACGT 1 cut(s) 721
MaeIII GTNAC 3 cut(s) 182, 515, 572
MalI GATC 3 cut(s) 284, 540, 651
MboI GATC 3 cut(s) 282, 538, 649
MhlI GDGCHC 4 cut(s) 138, 635, 804, 882
MluCI AATT 5 cut(s) 67, 85, 95, 364, 425
MlyI GAGTC 3 cut(s) 32, 203, 465
MnlI CCTC 8 cut(s) 9, 102, 320, 441, 474, 509, 596, 600
MseI TTAA 6 cut(s) 177, 423, 489, 741, 786, 855
MspCI CTTAAG 1 cut(s) 854
MspI CCGG 1 cut(s) 566
MspR9I CCNGG 3 cut(s) 245, 566, 797
Mva1269I GAATGC 1 cut(s) 597
MvaI CCWGG 2 cut(s) 245, 797
MvnI CGCG 1 cut(s) 692
NciI CCSGG 1 cut(s) 566
NdeI CATATG 1 cut(s) 521
NdeII GATC 3 cut(s) 282, 538, 649
NlaIV GGNNCC 1 cut(s) 936
NmuCI GTSAC 3 cut(s) 182, 515, 572
NspI RCATGY 3 cut(s) 190, 748, 947
PaeR7I CTCGAG 1 cut(s) 833
PagI TCATGA 1 cut(s) 12
PciI ACATGT 3 cut(s) 186, 744, 943
PctI GAATGC 1 cut(s) 597
PfeI GAWTC 1 cut(s) 694
PkrI GCNGC 3 cut(s) 260, 341, 814
PleI GAGTC 3 cut(s) 31, 202, 465
PpsI GAGTC 3 cut(s) 31, 202, 465
PscI ACATGT 3 cut(s) 186, 744, 943
PshAI GACNNNNGTC 1 cut(s) 402
PshBI ATTAAT 1 cut(s) 786
Psp124BI GAGCTC 1 cut(s) 138
Psp6I CCWGG 2 cut(s) 243, 795
PspGI CCWGG 2 cut(s) 243, 795
PspN4I GGNNCC 1 cut(s) 936
PspPI GGNCC 1 cut(s) 247
PstI CTGCAG 1 cut(s) 341
RsaI GTAC 5 cut(s) 352, 446, 509, 922, 936
RsaNI GTAC 5 cut(s) 351, 445, 508, 921, 935
SacI GAGCTC 1 cut(s) 138
SaqAI TTAA 6 cut(s) 177, 423, 489, 741, 786, 855
SatI GCNGC 3 cut(s) 259, 340, 813
Sau3AI GATC 3 cut(s) 282, 538, 649
Sau96I GGNCC 1 cut(s) 247
ScaI AGTACT 1 cut(s) 509
SchI GAGTC 3 cut(s) 32, 203, 465
ScrFI CCNGG 3 cut(s) 245, 566, 797
SduI GDGCHC 4 cut(s) 138, 635, 804, 882
SfaNI GCATC 2 cut(s) 164, 283
SfcI CTRYAG 2 cut(s) 51, 337
Sfr274I CTCGAG 1 cut(s) 833
SinI GGWCC 1 cut(s) 247
SlaI CTCGAG 1 cut(s) 833
SmlI CTYRAG 3 cut(s) 199, 833, 854
SmoI CTYRAG 3 cut(s) 199, 833, 854
Sse9I AATT 5 cut(s) 67, 85, 95, 364, 425
SsiI CCGC 3 cut(s) 614, 812, 815
SspMI CTAG 1 cut(s) 483
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 3 cut(s) 243, 564, 795
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 3 cut(s) 221, 737, 920
TaiI ACGT 1 cut(s) 724
TaqI TCGA 3 cut(s) 541, 601, 834
TasI AATT 5 cut(s) 67, 85, 95, 364, 425
TatI WGTACW 1 cut(s) 507
TauI GCSGC 1 cut(s) 815
TfiI GAWTC 1 cut(s) 694
Tru1I TTAA 6 cut(s) 177, 423, 489, 741, 786, 855
Tru9I TTAA 6 cut(s) 177, 423, 489, 741, 786, 855
TseFI GTSAC 3 cut(s) 182, 515, 572
TseI GCWGC 2 cut(s) 258, 339
Tsp45I GTSAC 3 cut(s) 182, 515, 572
TspDTI ATGAA 1 cut(s) 853
TspGWI ACGGA 2 cut(s) 392, 714
Vha464I CTTAAG 1 cut(s) 854
VpaK11BI GGWCC 1 cut(s) 247
VspI ATTAAT 1 cut(s) 786
XagI CCTNNNNNAGG 1 cut(s) 149
XapI RAATTY 1 cut(s) 364
XceI RCATGY 3 cut(s) 190, 748, 947
XhoI CTCGAG 1 cut(s) 833
XspI CTAG 1 cut(s) 483
ZrmI AGTACT 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.