Rw1G027390

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000226
Physical Location & Seq
Forward (+)
54880805 .. 54881691
887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G027390.1

Sequence Viewer

Length: 882 bp
ATGTTCAAGAAGCTGGGAGATAATAAAAAAGAGTTTGCTCCATTAGGTATTTGTGATGGGTGCCGGGACCCAATATTGGGCTCTAGTTATACTTACATCAATACTTACCGAGGTCACAAATGCTGTTTCATTCTCCACAAGTCATGTGCAGACTTACCCGGCGAGATCCAGCACCCTGTGCACCGTCAACACCCACTTTCTCTGCTCAATACAATTCAAGATATCAAAGTTCGTTGCTCATGTAATGCCTGCAATCAACCTTGCAAGTACCGCTACCGCTGCTCCATATGTGATTTCAATCTTCACCTCAATTGTGCCACCAATTGGCGAAACATTGTCGACACTGAATCTCATGAGCACCGGTTTAAGTTGATCTCCCGGAAGGAAATGGCCCAGCTCCACCTCATATGTGACGTTTGTGGGGAGTACTGGAGTGGCGTTGACTACTACCTCTGTAGCATCTGCCAGCTGTGGGTCCATAAGGAATGTGCTTCATTTCCACGCGACACCAAAATACCCGGCCACGAACACCGCCTCAAGCAAACCTGGTTCCTTGAAGACATTTACCCCAAGGACCAGATTTGTAAAATCTGCTGTACGAATATTGATAAGTATCGTACTGTATATTGTTGTCAGGAATGTTGCGGATATGTTGCCCACACTACATGCATGGATGTTGAGTACTTCCAGAAAGAAGAAAACATAGACAGAACCGTTAATATTTATGAGTTTGATGGTGCTGGAGAGATCGAACACTTCAGTCATCAACATCCTTTAGTCGCTAATGATCATCGTCAGGAGGTTAAGGATGACAGAATACTTACTTGTCAGGGTTGCATACTTGCATTCGACCCATCACTGAACACTTCACAGCTGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

293

Amino Acids

34.2

Weight (kDa)

6.48

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 60 - 106 6.7e-09 C1 domain
C1_2 PF03107 117 - 164 8.6e-07 C1 domain
C1_2 PF03107 174 - 224 7.6e-06 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 60
AccB7I CCANNNNNTGG 1 cut(s) 324
AccI GTMKAC 1 cut(s) 339
AccII CGCG 1 cut(s) 504
AciI CCGC 4 cut(s) 271, 277, 532, 645
AclWI GGATC 1 cut(s) 160
AcoI YGGCCR 1 cut(s) 520
AcuI CTGAAG 1 cut(s) 742
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 6 cut(s) 269, 428, 598, 619, 683, 878
AfiI CCNNNNNNNGG 4 cut(s) 76, 77, 324, 472
AgeI ACCGGT 1 cut(s) 360
AgsI TTSAA 4 cut(s) 7, 218, 298, 557
AjnI CCWGG 1 cut(s) 545
AluBI AGCT 4 cut(s) 13, 397, 469, 874
AluI AGCT 4 cut(s) 13, 397, 469, 874
Alw21I GWGCWC 2 cut(s) 183, 360
Alw44I GTGCAC 1 cut(s) 179
AlwI GGATC 1 cut(s) 160
AoxI GGCC 2 cut(s) 390, 520
ApaLI GTGCAC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 279
AsiGI ACCGGT 1 cut(s) 360
AspS9I GGNCC 4 cut(s) 67, 391, 475, 574
AsuC2I CCSGG 4 cut(s) 65, 159, 379, 519
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 3 cut(s) 67, 475, 574
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 60
BanII GRGCYC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 183, 360
BbvI GCAGC 1 cut(s) 266
BccI CCATC 3 cut(s) 50, 728, 862
BciT130I CCWGG 1 cut(s) 547
BclI TGATCA 1 cut(s) 787
BcnI CCSGG 4 cut(s) 65, 159, 379, 519
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 454
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
BmcAI AGTACT 2 cut(s) 428, 683
Bme1390I CCNGG 5 cut(s) 65, 159, 379, 519, 547
Bme18I GGWCC 3 cut(s) 67, 475, 574
BmgT120I GGNCC 4 cut(s) 67, 391, 475, 574
BmiI GGNNCC 5 cut(s) 62, 68, 69, 476, 551
BmrFI CCNGG 5 cut(s) 65, 159, 379, 519, 547
BmsI GCATC 1 cut(s) 468
BpiI GAAGAC 1 cut(s) 564
BpmI CTGGAG 2 cut(s) 451, 762
BpuEI CTTGAG 1 cut(s) 521
BpuMI CCSGG 4 cut(s) 65, 159, 379, 519
BsaBI GATNNNNATC 2 cut(s) 297, 612
BsaJI CCNNGG 2 cut(s) 109, 570
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 2 cut(s) 266, 296
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 77, 324, 472
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 1 cut(s) 434
Bse8I GATNNNNATC 2 cut(s) 297, 612
BseBI CCWGG 1 cut(s) 547
BseDI CCNNGG 2 cut(s) 109, 570
BseGI GGATG 3 cut(s) 679, 769, 814
BseJI GATNNNNATC 2 cut(s) 297, 612
BseLI CCNNNNNNNGG 4 cut(s) 76, 77, 324, 472
BseNI ACTGG 1 cut(s) 434
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 1 cut(s) 266
BseYI CCCAGC 2 cut(s) 13, 393
BsgI GTGCAG 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 504
BshFI GGCC 2 cut(s) 392, 522
BshNI GGYRCC 1 cut(s) 60
BshTI ACCGGT 1 cut(s) 360
BsiHKAI GWGCWC 2 cut(s) 183, 360
BsiSI CCGG 5 cut(s) 64, 159, 361, 379, 519
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 4 cut(s) 76, 77, 324, 472
BsmFI GGGAC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 2 cut(s) 392, 522
Bsp1286I GDGCHC 3 cut(s) 83, 183, 360
Bsp143I GATC 4 cut(s) 165, 372, 747, 787
BspACI CCGC 4 cut(s) 271, 277, 532, 645
BspANI GGCC 2 cut(s) 392, 522
BspFNI CGCG 1 cut(s) 504
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 5 cut(s) 62, 68, 69, 476, 551
BspPI GGATC 1 cut(s) 160
BspT107I GGYRCC 1 cut(s) 60
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 1 cut(s) 434
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 2 cut(s) 109, 570
BssMI GATC 4 cut(s) 165, 372, 747, 787
BssT1I CCWWGG 1 cut(s) 570
Bst2UI CCWGG 1 cut(s) 547
Bst4CI ACNGT 3 cut(s) 185, 622, 715
BstAPI GCANNNNNTGC 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 250, 467
BstF5I GGATG 3 cut(s) 679, 769, 814
BstFNI CGCG 1 cut(s) 504
BstKTI GATC 4 cut(s) 168, 375, 750, 790
BstMBI GATC 4 cut(s) 165, 372, 747, 787
BstMWI GCNNNNNNNGC 3 cut(s) 178, 270, 279
BstNI CCWGG 1 cut(s) 547
BstNSI RCATGY 1 cut(s) 669
BstSCI CCNGG 5 cut(s) 63, 157, 377, 517, 545
BstSFI CTRYAG 1 cut(s) 454
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 266
BstV2I GAAGAC 1 cut(s) 564
BstX2I RGATCY 1 cut(s) 165
BstYI RGATCY 1 cut(s) 165
BsuRI GGCC 2 cut(s) 392, 522
BtsCI GGATG 3 cut(s) 679, 769, 814
BtsIMutI CAGTG 2 cut(s) 342, 857
Cac8I GCNNGC 2 cut(s) 250, 467
CciI TCATGA 1 cut(s) 352
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 4 cut(s) 67, 391, 475, 574
CsiI ACCWGGT 1 cut(s) 545
Csp6I GTAC 6 cut(s) 268, 427, 597, 618, 682, 877
CspAI ACCGGT 1 cut(s) 360
CviAII CATG 5 cut(s) 144, 240, 353, 666, 670
CviJI RGCY 7 cut(s) 13, 81, 392, 397, 469, 522, 874
CviKI_1 RGCY 7 cut(s) 13, 81, 392, 397, 469, 522, 874
CviQI GTAC 6 cut(s) 268, 427, 597, 618, 682, 877
DpnI GATC 4 cut(s) 167, 374, 749, 789
DpnII GATC 4 cut(s) 165, 372, 747, 787
DraIII CACNNNGTG 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 520
Eco130I CCWWGG 1 cut(s) 570
Eco24I GRGCYC 1 cut(s) 83
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 3 cut(s) 67, 475, 574
Eco57I CTGAAG 1 cut(s) 742
EcoO109I RGGNCCY 1 cut(s) 67
EcoRII CCWGG 1 cut(s) 545
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 1 cut(s) 570
EcoT22I ATGCAT 1 cut(s) 671
EcoT38I GRGCYC 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 5 cut(s) 147, 243, 356, 669, 673
FaqI GGGAC 1 cut(s) 80
FatI CATG 5 cut(s) 143, 239, 352, 665, 669
FauNDI CATATG 2 cut(s) 287, 407
FbaI TGATCA 1 cut(s) 787
FblI GTMKAC 1 cut(s) 339
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 3 cut(s) 686, 756, 821
FriOI GRGCYC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 280
GsaI CCCAGC 2 cut(s) 17, 397
GsuI CTGGAG 2 cut(s) 451, 762
HaeIII GGCC 2 cut(s) 392, 522
HapII CCGG 5 cut(s) 64, 159, 361, 379, 519
Hin1II CATG 5 cut(s) 147, 243, 356, 669, 673
HincII GTYRAC 3 cut(s) 188, 340, 442
HindII GTYRAC 3 cut(s) 188, 340, 442
HinfI GANTC 1 cut(s) 347
HpaII CCGG 5 cut(s) 64, 159, 361, 379, 519
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 4 cut(s) 181, 188, 340, 442
Hpy188III TCNNGA 6 cut(s) 7, 218, 353, 635, 688, 797
Hpy8I GTNNAC 4 cut(s) 181, 188, 340, 442
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 3 cut(s) 185, 622, 715
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 7 cut(s) 149, 181, 252, 264, 669, 837, 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 178, 270, 279
HpySE526I ACGT 1 cut(s) 414
Hsp92II CATG 5 cut(s) 147, 243, 356, 669, 673
KflI GGGWCCC 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 787
Kzo9I GATC 4 cut(s) 165, 372, 747, 787
LmnI GCTCC 3 cut(s) 43, 287, 402
Lsp1109I GCAGC 1 cut(s) 266
LweI GCATC 1 cut(s) 468
MabI ACCWGGT 1 cut(s) 545
MaeI CTAG 1 cut(s) 84
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 2 cut(s) 113, 410
MalI GATC 4 cut(s) 167, 374, 749, 789
MboI GATC 4 cut(s) 165, 372, 747, 787
MboII GAAGA 3 cut(s) 293, 569, 707
MfeI CAATTG 2 cut(s) 310, 322
MflI RGATCY 1 cut(s) 165
MhlI GDGCHC 3 cut(s) 83, 183, 360
MluCI AATT 3 cut(s) 213, 310, 322
MnlI CCTC 6 cut(s) 104, 317, 413, 461, 545, 793
Mph1103I ATGCAT 1 cut(s) 671
MseI TTAA 3 cut(s) 366, 717, 804
MspA1I CMGCKG 3 cut(s) 279, 469, 874
MspI CCGG 5 cut(s) 64, 159, 361, 379, 519
MspR9I CCNGG 5 cut(s) 65, 159, 379, 519, 547
MunI CAATTG 2 cut(s) 310, 322
Mva1269I GAATGC 1 cut(s) 845
MvaI CCWGG 1 cut(s) 547
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 3 cut(s) 178, 270, 279
NciI CCSGG 4 cut(s) 65, 159, 379, 519
NdeI CATATG 2 cut(s) 287, 407
NdeII GATC 4 cut(s) 165, 372, 747, 787
NlaIII CATG 5 cut(s) 147, 243, 356, 669, 673
NlaIV GGNNCC 5 cut(s) 62, 68, 69, 476, 551
NmuCI GTSAC 2 cut(s) 113, 410
NsiI ATGCAT 1 cut(s) 671
NspI RCATGY 1 cut(s) 669
PagI TCATGA 1 cut(s) 352
PctI GAATGC 1 cut(s) 845
PfeI GAWTC 1 cut(s) 347
PflMI CCANNNNNTGG 1 cut(s) 324
PfoI TCCNGGA 1 cut(s) 377
PinAI ACCGGT 1 cut(s) 360
PkrI GCNGC 1 cut(s) 281
PpuMI RGGWCCY 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 67
Psp6I CCWGG 1 cut(s) 545
PspFI CCCAGC 2 cut(s) 13, 393
PspGI CCWGG 1 cut(s) 545
PspN4I GGNNCC 5 cut(s) 62, 68, 69, 476, 551
PspPI GGNCC 4 cut(s) 67, 391, 475, 574
PspPPI RGGWCCY 1 cut(s) 67
PsuI RGATCY 1 cut(s) 165
PvuII CAGCTG 2 cut(s) 469, 874
RsaI GTAC 6 cut(s) 269, 428, 598, 619, 683, 878
RsaNI GTAC 6 cut(s) 268, 427, 597, 618, 682, 877
SalI GTCGAC 1 cut(s) 338
SaqAI TTAA 3 cut(s) 366, 717, 804
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 4 cut(s) 165, 372, 747, 787
Sau96I GGNCC 4 cut(s) 67, 391, 475, 574
ScaI AGTACT 2 cut(s) 428, 683
ScrFI CCNGG 5 cut(s) 65, 159, 379, 519, 547
SduI GDGCHC 3 cut(s) 83, 183, 360
SexAI ACCWGGT 1 cut(s) 545
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 454
SinI GGWCC 3 cut(s) 67, 475, 574
SmlI CTYRAG 1 cut(s) 536
SmoI CTYRAG 1 cut(s) 536
Sse9I AATT 3 cut(s) 213, 310, 322
SsiI CCGC 4 cut(s) 271, 277, 532, 645
SspI AATATT 3 cut(s) 75, 604, 721
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 5 cut(s) 63, 157, 377, 517, 545
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 3 cut(s) 185, 622, 715
TaiI ACGT 1 cut(s) 417
TaqI TCGA 3 cut(s) 339, 750, 849
TasI AATT 3 cut(s) 213, 310, 322
TatI WGTACW 3 cut(s) 426, 681, 876
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 3 cut(s) 366, 717, 804
Tru9I TTAA 3 cut(s) 366, 717, 804
TscAI CASTG 2 cut(s) 349, 864
TseFI GTSAC 2 cut(s) 113, 410
TseI GCWGC 1 cut(s) 279
Tsp45I GTSAC 2 cut(s) 113, 410
TspDTI ATGAA 2 cut(s) 118, 483
TspRI CASTG 2 cut(s) 349, 864
Van91I CCANNNNNTGG 1 cut(s) 324
VneI GTGCAC 1 cut(s) 179
VpaK11BI GGWCC 3 cut(s) 67, 475, 574
XceI RCATGY 1 cut(s) 669
XmiI GTMKAC 1 cut(s) 339
XspI CTAG 1 cut(s) 84
ZrmI AGTACT 2 cut(s) 428, 683
Zsp2I ATGCAT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.