BEST Arabidopsis thaliana protein match is Cysteine Histidine-rich C1 domain family protein (TAIR
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C1_2 | PF03107 | 183 - 232 | 1.7e-12 | C1 domain |
| C1_2 | PF03107 | 244 - 286 | 1.2e-13 | C1 domain |
| C1_2 | PF03107 | 296 - 344 | 8.4e-09 | C1 domain |
| C1_2 | PF03107 | 379 - 428 | 2.9e-10 | C1 domain |
| C1_2 | PF03107 | 544 - 590 | 5.9e-10 | C1 domain |
| C1-like_CT | PF22926 | 610 - 652 | 9.9e-14 | C1 domain-like, C-terminal |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 878 |
| AarI | CACCTGC | 1 cut(s) | 513 |
| Acc36I | ACCTGC | 1 cut(s) | 513 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 964 |
| AccII | CGCG | 2 cut(s) | 1344, 1609 |
| AciI | CCGC | 5 cut(s) | 25, 524, 704, 1198, 1607 |
| AclWI | GGATC | 5 cut(s) | 25, 43, 273, 306, 1831 |
| AcsI | RAATTY | 1 cut(s) | 1286 |
| AcuI | CTGAAG | 2 cut(s) | 191, 818 |
| AdeI | CACNNNGTG | 1 cut(s) | 1764 |
| AfaI | GTAC | 2 cut(s) | 317, 1895 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 376, 511, 964, 1408 |
| AflII | CTTAAG | 1 cut(s) | 566 |
| AflIII | ACRYGT | 4 cut(s) | 779, 1306, 1530, 1730 |
| AgsI | TTSAA | 7 cut(s) | 95, 338, 449, 830, 1079, 1562, 1591 |
| AjiI | CACGTC | 1 cut(s) | 295 |
| AjnI | CCWGG | 1 cut(s) | 1795 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 738, 770 |
| AluBI | AGCT | 3 cut(s) | 98, 211, 571 |
| AluI | AGCT | 3 cut(s) | 98, 211, 571 |
| Alw21I | GWGCWC | 1 cut(s) | 1842 |
| Alw26I | GTCTC | 4 cut(s) | 341, 1770, 1811, 1968 |
| AlwI | GGATC | 5 cut(s) | 25, 43, 273, 306, 1831 |
| AoxI | GGCC | 1 cut(s) | 162 |
| ApeKI | GCWGC | 1 cut(s) | 1203 |
| ApoI | RAATTY | 1 cut(s) | 1286 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1721 |
| AspLEI | GCGC | 3 cut(s) | 366, 1208, 1598 |
| AsuC2I | CCSGG | 2 cut(s) | 195, 493 |
| AsuHPI | GGTGA | 6 cut(s) | 86, 667, 734, 890, 1262, 1488 |
| AsuII | TTCGAA | 1 cut(s) | 728 |
| BanII | GRGCYC | 1 cut(s) | 1791 |
| BauI | CACGAG | 1 cut(s) | 35 |
| Bbv12I | GWGCWC | 1 cut(s) | 1842 |
| BbvI | GCAGC | 1 cut(s) | 1215 |
| BccI | CCATC | 8 cut(s) | 101, 193, 496, 599, 715, 1467, 1498, 1559 |
| BceAI | ACGGC | 2 cut(s) | 1084, 1340 |
| BciT130I | CCWGG | 1 cut(s) | 1797 |
| BclI | TGATCA | 2 cut(s) | 739, 895 |
| BcnI | CCSGG | 2 cut(s) | 195, 493 |
| BcoDI | GTCTC | 4 cut(s) | 341, 1770, 1811, 1968 |
| BfaI | CTAG | 3 cut(s) | 527, 1542, 1749 |
| BfrI | CTTAAG | 1 cut(s) | 566 |
| BfuAI | ACCTGC | 1 cut(s) | 513 |
| BisI | GCNGC | 1 cut(s) | 1204 |
| BlsI | GCNGC | 1 cut(s) | 1205 |
| Bme1390I | CCNGG | 3 cut(s) | 195, 493, 1797 |
| BmgBI | CACGTC | 1 cut(s) | 295 |
| BmiI | GGNNCC | 1 cut(s) | 1449 |
| BmrFI | CCNGG | 3 cut(s) | 195, 493, 1797 |
| BmsI | GCATC | 3 cut(s) | 190, 391, 493 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1550 |
| Bpu14I | TTCGAA | 1 cut(s) | 728 |
| BpuEI | CTTGAG | 1 cut(s) | 359 |
| BpuMI | CCSGG | 2 cut(s) | 195, 493 |
| Bsa29I | ATCGAT | 1 cut(s) | 636 |
| BsaJI | CCNNGG | 2 cut(s) | 492, 678 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 376, 511, 964, 1408 |
| Bse3DI | GCAATG | 2 cut(s) | 1525, 1885 |
| BseBI | CCWGG | 1 cut(s) | 1797 |
| BseCI | ATCGAT | 1 cut(s) | 636 |
| BseDI | CCNNGG | 2 cut(s) | 492, 678 |
| BseGI | GGATG | 8 cut(s) | 181, 190, 484, 488, 843, 1459, 1468, 1477 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 376, 511, 964, 1408 |
| BseMI | GCAATG | 2 cut(s) | 1525, 1885 |
| BseMII | CTCAG | 5 cut(s) | 56, 336, 1564, 1806, 1938 |
| BseRI | GAGGAG | 1 cut(s) | 428 |
| BseXI | GCAGC | 1 cut(s) | 1215 |
| BsgI | GTGCAG | 1 cut(s) | 1222 |
| Bsh1236I | CGCG | 2 cut(s) | 1344, 1609 |
| BshFI | GGCC | 1 cut(s) | 164 |
| BshVI | ATCGAT | 1 cut(s) | 636 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1842 |
| BsiSI | CCGG | 2 cut(s) | 195, 492 |
| BslFI | GGGAC | 1 cut(s) | 269 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 376, 511, 964, 1408 |
| BsmAI | GTCTC | 4 cut(s) | 341, 1770, 1811, 1968 |
| BsmBI | CGTCTC | 1 cut(s) | 1811 |
| BsmFI | GGGAC | 1 cut(s) | 269 |
| BsmI | GAATGC | 2 cut(s) | 40, 1551 |
| BsnI | GGCC | 1 cut(s) | 164 |
| Bsp119I | TTCGAA | 1 cut(s) | 728 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1791, 1842 |
| BspACI | CCGC | 5 cut(s) | 25, 524, 704, 1198, 1607 |
| BspANI | GGCC | 1 cut(s) | 164 |
| BspCNI | CTCAG | 5 cut(s) | 57, 337, 1563, 1807, 1937 |
| BspDI | ATCGAT | 1 cut(s) | 636 |
| BspFNI | CGCG | 2 cut(s) | 1344, 1609 |
| BspHI | TCATGA | 1 cut(s) | 736 |
| BspLI | GGNNCC | 1 cut(s) | 1449 |
| BspMI | ACCTGC | 1 cut(s) | 513 |
| BspPI | GGATC | 5 cut(s) | 25, 43, 273, 306, 1831 |
| BspQI | GCTCTTC | 1 cut(s) | 1140 |
| BspT104I | TTCGAA | 1 cut(s) | 728 |
| BspTI | CTTAAG | 1 cut(s) | 566 |
| BsrDI | GCAATG | 2 cut(s) | 1525, 1885 |
| BssECI | CCNNGG | 2 cut(s) | 492, 678 |
| BssSI | CACGAG | 1 cut(s) | 35 |
| BssT1I | CCWWGG | 1 cut(s) | 678 |
| Bst2BI | CACGAG | 1 cut(s) | 35 |
| Bst2UI | CCWGG | 1 cut(s) | 1797 |
| Bst4CI | ACNGT | 3 cut(s) | 476, 902, 1280 |
| Bst6I | CTCTTC | 3 cut(s) | 210, 759, 1140 |
| BstAFI | CTTAAG | 1 cut(s) | 566 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 126, 1209 |
| BstBI | TTCGAA | 1 cut(s) | 728 |
| BstC8I | GCNNGC | 3 cut(s) | 910, 1210, 1871 |
| BstDEI | CTNAG | 7 cut(s) | 9, 65, 215, 345, 1550, 1815, 1924 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 374, 509 |
| BstF5I | GGATG | 8 cut(s) | 181, 190, 484, 488, 843, 1459, 1468, 1477 |
| BstFNI | CGCG | 2 cut(s) | 1344, 1609 |
| BstHHI | GCGC | 3 cut(s) | 366, 1208, 1598 |
| BstMAI | GTCTC | 4 cut(s) | 341, 1770, 1811, 1968 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 117, 126, 363, 1209, 1593, 1866 |
| BstNI | CCWGG | 1 cut(s) | 1797 |
| BstNSI | RCATGY | 7 cut(s) | 129, 783, 1212, 1310, 1534, 1734, 1894 |
| BstSCI | CCNGG | 3 cut(s) | 193, 491, 1795 |
| BstUI | CGCG | 2 cut(s) | 1344, 1609 |
| BstV1I | GCAGC | 1 cut(s) | 1215 |
| BstX2I | RGATCY | 2 cut(s) | 265, 298 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1719 |
| BstYI | RGATCY | 2 cut(s) | 265, 298 |
| Bsu15I | ATCGAT | 1 cut(s) | 636 |
| BsuRI | GGCC | 1 cut(s) | 164 |
| BsuTUI | ATCGAT | 1 cut(s) | 636 |
| BtgZI | GCGATG | 1 cut(s) | 120 |
| BtrI | CACGTC | 1 cut(s) | 295 |
| BtsCI | GGATG | 8 cut(s) | 181, 190, 484, 488, 843, 1459, 1468, 1477 |
| BtsI | GCAGTG | 1 cut(s) | 1880 |
| BtsIMutI | CAGTG | 2 cut(s) | 1446, 1880 |
| BveI | ACCTGC | 1 cut(s) | 513 |
| Cac8I | GCNNGC | 3 cut(s) | 910, 1210, 1871 |
| CciI | TCATGA | 1 cut(s) | 736 |
| CfoI | GCGC | 3 cut(s) | 366, 1208, 1598 |
| ClaI | ATCGAT | 1 cut(s) | 636 |
| CseI | GACGC | 1 cut(s) | 96 |
| Csp6I | GTAC | 2 cut(s) | 316, 1894 |
| CviQI | GTAC | 2 cut(s) | 316, 1894 |
| DdeI | CTNAG | 7 cut(s) | 9, 65, 215, 345, 1550, 1815, 1924 |
| DraI | TTTAAA | 1 cut(s) | 699 |
| DraIII | CACNNNGTG | 1 cut(s) | 1764 |
| Eam1104I | CTCTTC | 3 cut(s) | 210, 759, 1140 |
| EarI | CTCTTC | 3 cut(s) | 210, 759, 1140 |
| Eco130I | CCWWGG | 1 cut(s) | 678 |
| Eco147I | AGGCCT | 1 cut(s) | 164 |
| Eco24I | GRGCYC | 1 cut(s) | 1791 |
| Eco57I | CTGAAG | 2 cut(s) | 191, 818 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 374, 509 |
| EcoRII | CCWGG | 1 cut(s) | 1795 |
| EcoT14I | CCWWGG | 1 cut(s) | 678 |
| EcoT38I | GRGCYC | 1 cut(s) | 1791 |
| ErhI | CCWWGG | 1 cut(s) | 678 |
| Esp3I | CGTCTC | 1 cut(s) | 1811 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 843, 875 |
| FaqI | GGGAC | 1 cut(s) | 269 |
| FauI | CCCGC | 2 cut(s) | 531, 711 |
| FauNDI | CATATG | 3 cut(s) | 821, 1430, 1828 |
| FbaI | TGATCA | 2 cut(s) | 739, 895 |
| Fnu4HI | GCNGC | 1 cut(s) | 1204 |
| FokI | GGATG | 8 cut(s) | 168, 177, 471, 475, 830, 1446, 1455, 1464 |
| FriOI | GRGCYC | 1 cut(s) | 1791 |
| Fsp4HI | GCNGC | 1 cut(s) | 1204 |
| FspBI | CTAG | 3 cut(s) | 527, 1542, 1749 |
| GlaI | GCGC | 3 cut(s) | 365, 1207, 1597 |
| GluI | GCNGC | 1 cut(s) | 1204 |
| HaeIII | GGCC | 1 cut(s) | 164 |
| HapII | CCGG | 2 cut(s) | 195, 492 |
| HgaI | GACGC | 1 cut(s) | 96 |
| HhaI | GCGC | 3 cut(s) | 366, 1208, 1598 |
| Hin6I | GCGC | 3 cut(s) | 364, 1206, 1596 |
| HinP1I | GCGC | 3 cut(s) | 364, 1206, 1596 |
| HincII | GTYRAC | 2 cut(s) | 587, 1630 |
| HindII | GTYRAC | 2 cut(s) | 587, 1630 |
| HindIII | AAGCTT | 1 cut(s) | 569 |
| HinfI | GANTC | 9 cut(s) | 5, 170, 538, 725, 765, 770, 1232, 1380, 1708 |
| HpaII | CCGG | 2 cut(s) | 195, 492 |
| HphI | GGTGA | 6 cut(s) | 86, 667, 734, 890, 1262, 1488 |
| Hpy166II | GTNNAC | 5 cut(s) | 86, 142, 221, 587, 1630 |
| Hpy188I | TCNGA | 7 cut(s) | 10, 66, 169, 346, 604, 1775, 1945 |
| Hpy188III | TCNNGA | 5 cut(s) | 446, 737, 1472, 1536, 1712 |
| Hpy8I | GTNNAC | 5 cut(s) | 86, 142, 221, 587, 1630 |
| Hpy99I | CGWCG | 2 cut(s) | 296, 1169 |
| HpyAV | CCTTC | 6 cut(s) | 246, 380, 793, 875, 1061, 1246 |
| HpyCH4III | ACNGT | 3 cut(s) | 476, 902, 1280 |
| HpyCH4IV | ACGT | 2 cut(s) | 294, 531 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 117, 126, 363, 1209, 1593, 1866 |
| HpyF3I | CTNAG | 7 cut(s) | 9, 65, 215, 345, 1550, 1815, 1924 |
| HpySE526I | ACGT | 2 cut(s) | 294, 531 |
| HspAI | GCGC | 3 cut(s) | 364, 1206, 1596 |
| Ksp22I | TGATCA | 2 cut(s) | 739, 895 |
| LguI | GCTCTTC | 1 cut(s) | 1140 |
| LmnI | GCTCC | 1 cut(s) | 1447 |
| Lsp1109I | GCAGC | 1 cut(s) | 1215 |
| LweI | GCATC | 3 cut(s) | 190, 391, 493 |
| MaeI | CTAG | 3 cut(s) | 527, 1542, 1749 |
| MaeII | ACGT | 2 cut(s) | 294, 531 |
| MaeIII | GTNAC | 7 cut(s) | 197, 284, 668, 1256, 1352, 1397, 1526 |
| MflI | RGATCY | 2 cut(s) | 265, 298 |
| MhlI | GDGCHC | 2 cut(s) | 1791, 1842 |
| MluCI | AATT | 4 cut(s) | 241, 835, 1286, 1418 |
| MlyI | GAGTC | 2 cut(s) | 759, 764 |
| MmeI | TCCRAC | 2 cut(s) | 1425, 1753 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1721 |
| MseI | TTAA | 4 cut(s) | 261, 567, 698, 1616 |
| MslI | CAYNNNNRTG | 1 cut(s) | 399 |
| MspCI | CTTAAG | 1 cut(s) | 566 |
| MspI | CCGG | 2 cut(s) | 195, 492 |
| MspR9I | CCNGG | 3 cut(s) | 195, 493, 1797 |
| Mva1269I | GAATGC | 2 cut(s) | 40, 1551 |
| MvaI | CCWGG | 1 cut(s) | 1797 |
| MvnI | CGCG | 2 cut(s) | 1344, 1609 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 117, 126, 363, 1209, 1593, 1866 |
| NciI | CCSGG | 2 cut(s) | 195, 493 |
| NdeI | CATATG | 3 cut(s) | 821, 1430, 1828 |
| NlaIV | GGNNCC | 1 cut(s) | 1449 |
| NmuCI | GTSAC | 3 cut(s) | 197, 1256, 1352 |
| NspI | RCATGY | 7 cut(s) | 129, 783, 1212, 1310, 1534, 1734, 1894 |
| NspV | TTCGAA | 1 cut(s) | 728 |
| PaeI | GCATGC | 1 cut(s) | 1212 |
| PagI | TCATGA | 1 cut(s) | 736 |
| PaqCI | CACCTGC | 1 cut(s) | 513 |
| PceI | AGGCCT | 1 cut(s) | 164 |
| PciI | ACATGT | 4 cut(s) | 779, 1306, 1530, 1730 |
| PciSI | GCTCTTC | 1 cut(s) | 1140 |
| PctI | GAATGC | 2 cut(s) | 40, 1551 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1721 |
| PfeI | GAWTC | 7 cut(s) | 5, 170, 538, 725, 1232, 1380, 1708 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 964 |
| PkrI | GCNGC | 1 cut(s) | 1205 |
| PleI | GAGTC | 2 cut(s) | 759, 764 |
| PpsI | GAGTC | 2 cut(s) | 759, 764 |
| PscI | ACATGT | 4 cut(s) | 779, 1306, 1530, 1730 |
| PsiI | TTATAA | 1 cut(s) | 878 |
| Psp6I | CCWGG | 1 cut(s) | 1795 |
| PspGI | CCWGG | 1 cut(s) | 1795 |
| PspN4I | GGNNCC | 1 cut(s) | 1449 |
| PsuI | RGATCY | 2 cut(s) | 265, 298 |
| RsaI | GTAC | 2 cut(s) | 317, 1895 |
| RsaNI | GTAC | 2 cut(s) | 316, 1894 |
| RseI | CAYNNNNRTG | 1 cut(s) | 399 |
| SapI | GCTCTTC | 1 cut(s) | 1140 |
| SaqAI | TTAA | 4 cut(s) | 261, 567, 698, 1616 |
| SatI | GCNGC | 1 cut(s) | 1204 |
| SchI | GAGTC | 2 cut(s) | 759, 764 |
| ScrFI | CCNGG | 3 cut(s) | 195, 493, 1797 |
| SduI | GDGCHC | 2 cut(s) | 1791, 1842 |
| SfaNI | GCATC | 3 cut(s) | 190, 391, 493 |
| SfuI | TTCGAA | 1 cut(s) | 728 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 399 |
| SmlI | CTYRAG | 2 cut(s) | 374, 566 |
| SmoI | CTYRAG | 2 cut(s) | 374, 566 |
| SphI | GCATGC | 1 cut(s) | 1212 |
| Sse9I | AATT | 4 cut(s) | 241, 835, 1286, 1418 |
| SseBI | AGGCCT | 1 cut(s) | 164 |
| SsiI | CCGC | 5 cut(s) | 25, 524, 704, 1198, 1607 |
| SspMI | CTAG | 3 cut(s) | 527, 1542, 1749 |
| StuI | AGGCCT | 1 cut(s) | 164 |
| StyD4I | CCNGG | 3 cut(s) | 193, 491, 1795 |
| StyI | CCWWGG | 1 cut(s) | 678 |
| TaaI | ACNGT | 3 cut(s) | 476, 902, 1280 |
| TaiI | ACGT | 2 cut(s) | 297, 534 |
| TasI | AATT | 4 cut(s) | 241, 835, 1286, 1418 |
| TfiI | GAWTC | 7 cut(s) | 5, 170, 538, 725, 1232, 1380, 1708 |
| Tru1I | TTAA | 4 cut(s) | 261, 567, 698, 1616 |
| Tru9I | TTAA | 4 cut(s) | 261, 567, 698, 1616 |
| TscAI | CASTG | 2 cut(s) | 1446, 1880 |
| TseFI | GTSAC | 3 cut(s) | 197, 1256, 1352 |
| TseI | GCWGC | 1 cut(s) | 1203 |
| Tsp45I | GTSAC | 3 cut(s) | 197, 1256, 1352 |
| TspDTI | ATGAA | 9 cut(s) | 383, 455, 829, 1007, 1203, 1252, 1335, 1430, 1721 |
| TspGWI | ACGGA | 1 cut(s) | 1210 |
| TspRI | CASTG | 2 cut(s) | 1446, 1880 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 964 |
| Vha464I | CTTAAG | 1 cut(s) | 566 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 374, 509 |
| XapI | RAATTY | 1 cut(s) | 1286 |
| XceI | RCATGY | 7 cut(s) | 129, 783, 1212, 1310, 1534, 1734, 1894 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1721 |
| XspI | CTAG | 3 cut(s) | 527, 1542, 1749 |