MD14G1060100.v1.1

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000226
Physical Location & Seq
Reverse (-)
6332918 .. 6334351
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1060100.v1.1.491

Sequence Viewer

Length: 594 bp
ATGTGTGACGTCAATATACATCAGTCATGTGCGGAGTTACCCCGTGCGATCCACCACCCGCTCCACCCCAAACACCCTCTTATTCTCAGAAACCTAGATCGGCCAAGGCACCGGGGCTCCAAATGTGGTGTGTGTAGCCAGTTATATCCACAAGAATGGTTACTTGCTTACTGTTGTTCCGAATGCAACTTCTGGATAGACATCAAATGTGCTTTCGAGTGGCAAAACGATGGTCATGAGCACAACTTCACCATTATTAGGAGGCCCATTAAATTCACTTGCGATGTCTGTGGCCAAGGGGATGACAATATTCAATACAACTCCTACATCTGTAAAATCTGCCAGCTCATTGTTCATCGCTCATGCTCTTGGTTACCGCTCCAAGTCAAAATAGCACGCCACCAACACCGCCTCAAGCTTACCTGGTGGTTCCAAGACATGTACCCCAGATACCAAGATTTCTGTGACATTTGCGCAGAAAACATGGAGGAAAACCGTGCTATGTATTGTTGTCATGATCATGAATGTCGTGGTTATGCTGCCCACTGTAAATGCTTAAGAAAAGAGGAAAATCATGAACATCCTCGTCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

198

Amino Acids

23.65

Weight (kDa)

7.82

Isoelectric Point (pI)

52.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C1_2 PF03107 20 - 71 1.9e-09 C1 domain
C1_2 PF03107 79 - 122 2.7e-08 C1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000226)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G58037 AT1G58037 AT1G60787 AT1G60787 AT1G60787 AT1G60787 AT1G65180 AT1G69150 AT2G04500 AT2G04680 AT2G19650 AT2G19660 AT2G19660 AT2G21810 AT2G21830 AT2G21830 AT2G21840 AT2G21850 AT2G43220 AT3G06990 AT3G07000 AT3G25850 AT3G27473 AT3G27473 AT3G27473 AT3G27473 AT3G27480 AT3G27480 AT3G27490 AT3G27490 AT3G27500 AT3G27500 AT3G27500 AT3G27510 AT3G27510 AT3G28650 AT3G43890 AT3G45530 AT3G45840 AT3G46800 AT3G46810 AT3G48400 AT4G01350 AT4G01740 AT4G01760 AT4G01910 AT4G01920 AT4G01925 AT4G01930 AT4G02180 AT4G02190 AT4G09690 AT4G11390 AT4G11390 AT4G11540 AT4G11550 AT4G13992 AT4G14980 AT4G16015 AT4G16015 AT5G22355 AT5G26190 AT5G29624 AT5G37620 AT5G39471 AT5G40320 AT5G42840 AT5G42840 AT5G43030 AT5G43040 AT5G44770 AT5G45730 AT5G54020 AT5G54020 AT5G54030 AT5G54040 AT5G54050 AT5G59920 AT5G59930 AT5G59930 AT5G59940
fragaria_vesca FvH4_4g12791 FvH4_6g40980 FvH4_6g41040 FvH4_6g47450 FvH4_7g18770
malus_domestica MD00G1084300.v1.1 MD12G1059900.v1.1 MD14G1057000.v1.1 MD14G1057200.v1.1 MD14G1060000.v1.1 MD14G1060100.v1.1
prunus_persica Prupe.7G074300_v2.0.a1 Prupe.7G074400_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G074600_v2.0.a1 Prupe.7G078300_v2.0.a1 Prupe.7G078400_v2.0.a1 Prupe.7G078800_v2.0.a1 Prupe.7G081900_v2.0.a1 Prupe.7G092300_v2.0.a1
pyrus_communis pycom14g04870
rosa_chinensis RchiOBHm_Chr1g0362581 RchiOBHm_Chr3g0480191
rosa_laevigata RLG00000023512 RLG00000023513 RLG00000027637
rosa_multiflora Rmu_co8180116.1_g000001 Rmu_co8226133.1_g000001 Rmu_sc0005725.1_g000009 Rmu_sc0006604.1_g000012 Rmu_sc0015624.1_g000001 Rmu_sc0020879.1_g000005 Rmu_sc0020879.1_g000008
rosa_roxburghii Rroxscaffold_4G00293940 Rroxscaffold_6G00401730
rosa_rugosa Rorug01G0299800.1 Rorug03G0180900 Rorug04G0106000 Rorug04G0106100
rosa_samantha Rh1AG308400 Rh1BG271700 Rh1BG271800 Rh1BG272000 Rh1BG272100 Rh1CG289300 Rh1DG302100 Rh1DG302200 Rh1DG302400 Rh1DG302500 Rh3BG264400 Rh3CG262400 Rh3CG262500 Rh3DG258100 Rh3DG258200 Rh3DG258300 Rh3DG273800 Rh4BG170600 Rh7AG404100 Rh7AG404700 Rh7CG422900
rosa_wichuraiana Rw0G000030 Rw1G027380 Rw1G027390 Rw3G020880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc16I TGCGCA 1 cut(s) 475
AccB1I GGYRCC 1 cut(s) 108
AccBSI CCGCTC 2 cut(s) 61, 379
AciI CCGC 4 cut(s) 32, 59, 377, 409
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 2 cut(s) 101, 292
AcsI RAATTY 1 cut(s) 272
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 258
AflII CTTAAG 1 cut(s) 556
AflIII ACRYGT 1 cut(s) 438
AgsI TTSAA 1 cut(s) 314
AjnI CCWGG 1 cut(s) 422
AluBI AGCT 2 cut(s) 346, 418
AluI AGCT 2 cut(s) 346, 418
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 1 cut(s) 43
AoxI GGCC 3 cut(s) 101, 263, 292
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
AspLEI GCGC 1 cut(s) 476
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 241
BalI TGGCCA 1 cut(s) 294
BanI GGYRCC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 243
BbvI GCAGC 1 cut(s) 526
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 1 cut(s) 424
BclI TGATCA 1 cut(s) 517
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 1 cut(s) 95
BfrI CTTAAG 1 cut(s) 556
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 113, 424
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 3 cut(s) 110, 118, 431
BmrFI CCNGG 2 cut(s) 113, 424
BpuEI CTTGAG 1 cut(s) 398
BpuMI CCSGG 1 cut(s) 113
BsaBI GATNNNNATC 1 cut(s) 200
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 3 cut(s) 104, 112, 295
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 1 cut(s) 424
BseDI CCNNGG 3 cut(s) 104, 112, 295
BseGI GGATG 2 cut(s) 307, 580
BseJI GATNNNNATC 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 526
BshFI GGCC 3 cut(s) 103, 265, 294
BshNI GGYRCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 243
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 258
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 3 cut(s) 103, 265, 294
Bsp1286I GDGCHC 2 cut(s) 119, 243
Bsp143I GATC 3 cut(s) 48, 97, 517
BspACI CCGC 4 cut(s) 32, 59, 377, 409
BspANI GGCC 3 cut(s) 103, 265, 294
BspCNI CTCAG 1 cut(s) 99
BspHI TCATGA 4 cut(s) 235, 514, 520, 574
BspLI GGNNCC 3 cut(s) 110, 118, 431
BspPI GGATC 1 cut(s) 43
BspT107I GGYRCC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 556
BsrBI CCGCTC 2 cut(s) 61, 379
BsrI ACTGG 1 cut(s) 139
BssECI CCNNGG 3 cut(s) 104, 112, 295
BssMI GATC 3 cut(s) 48, 97, 517
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 2 cut(s) 104, 295
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 3 cut(s) 173, 497, 548
BstACI GRCGYC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 556
BstC8I GCNNGC 2 cut(s) 344, 397
BstDEI CTNAG 1 cut(s) 86
BstEII GGTNACC 1 cut(s) 372
BstF5I GGATG 2 cut(s) 307, 580
BstHHI GCGC 1 cut(s) 476
BstKTI GATC 3 cut(s) 51, 100, 520
BstMBI GATC 3 cut(s) 48, 97, 517
BstNI CCWGG 1 cut(s) 424
BstNSI RCATGY 1 cut(s) 442
BstPI GGTNACC 1 cut(s) 372
BstSCI CCNGG 2 cut(s) 111, 422
BstV1I GCAGC 1 cut(s) 526
BstXI CCANNNNNNTGG 1 cut(s) 156
BsuRI GGCC 3 cut(s) 103, 265, 294
BtgZI GCGATG 2 cut(s) 297, 341
BtsCI GGATG 2 cut(s) 307, 580
BtsIMutI CAGTG 1 cut(s) 544
Cac8I GCNNGC 2 cut(s) 344, 397
CciI TCATGA 4 cut(s) 235, 514, 520, 574
CfoI GCGC 1 cut(s) 476
Cfr13I GGNCC 1 cut(s) 264
CsiI ACCWGGT 1 cut(s) 422
Csp6I GTAC 1 cut(s) 442
CviAII CATG 8 cut(s) 27, 236, 363, 439, 484, 515, 521, 575
CviJI RGCY 7 cut(s) 103, 117, 138, 265, 294, 346, 418
CviKI_1 RGCY 7 cut(s) 103, 117, 138, 265, 294, 346, 418
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 86
DpnI GATC 3 cut(s) 50, 99, 519
DpnII GATC 3 cut(s) 48, 97, 517
EaeI YGGCCR 2 cut(s) 101, 292
Eco130I CCWWGG 2 cut(s) 104, 295
Eco24I GRGCYC 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 372
EcoO65I GGTNACC 1 cut(s) 372
EcoRII CCWGG 1 cut(s) 422
EcoT14I CCWWGG 2 cut(s) 104, 295
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 2 cut(s) 104, 295
FaeI CATG 8 cut(s) 30, 239, 366, 442, 487, 518, 524, 578
FatI CATG 8 cut(s) 26, 235, 362, 438, 483, 514, 520, 574
FauI CCCGC 1 cut(s) 66
FbaI TGATCA 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 2 cut(s) 314, 567
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 1 cut(s) 95
FspI TGCGCA 1 cut(s) 475
GlaI GCGC 1 cut(s) 475
GluI GCNGC 1 cut(s) 540
HaeIII GGCC 3 cut(s) 103, 265, 294
HapII CCGG 1 cut(s) 112
HhaI GCGC 1 cut(s) 476
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 8 cut(s) 30, 239, 366, 442, 487, 518, 524, 578
Hin6I GCGC 1 cut(s) 474
HinP1I GCGC 1 cut(s) 474
HindIII AAGCTT 1 cut(s) 416
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 89, 181
Hpy188III TCNNGA 5 cut(s) 193, 236, 515, 521, 575
Hpy99I CGWCG 1 cut(s) 591
HpyCH4III ACNGT 3 cut(s) 173, 497, 548
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 1 cut(s) 186
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 8 cut(s) 30, 239, 366, 442, 487, 518, 524, 578
HspAI GCGC 1 cut(s) 474
Ksp22I TGATCA 1 cut(s) 517
Kzo9I GATC 3 cut(s) 48, 97, 517
LmnI GCTCC 3 cut(s) 66, 122, 384
LpnPI CCDG 7 cut(s) 125, 152, 178, 356, 409, 436, 460
Lsp1109I GCAGC 1 cut(s) 526
MabI ACCWGGT 1 cut(s) 422
MaeI CTAG 1 cut(s) 95
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 5 cut(s) 5, 36, 159, 372, 464
MalI GATC 3 cut(s) 50, 99, 519
MbiI CCGCTC 2 cut(s) 61, 379
MboI GATC 3 cut(s) 48, 97, 517
MhlI GDGCHC 2 cut(s) 119, 243
MlsI TGGCCA 1 cut(s) 294
MluCI AATT 1 cut(s) 272
MluNI TGGCCA 1 cut(s) 294
MnlI CCTC 6 cut(s) 87, 255, 422, 481, 559, 594
Mox20I TGGCCA 1 cut(s) 294
MscI TGGCCA 1 cut(s) 294
MseI TTAA 2 cut(s) 270, 557
MslI CAYNNNNRTG 2 cut(s) 154, 519
Msp20I TGGCCA 1 cut(s) 294
MspCI CTTAAG 1 cut(s) 556
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 113, 424
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 1 cut(s) 424
NciI CCSGG 1 cut(s) 113
NdeII GATC 3 cut(s) 48, 97, 517
NlaIII CATG 8 cut(s) 30, 239, 366, 442, 487, 518, 524, 578
NlaIV GGNNCC 3 cut(s) 110, 118, 431
NmuCI GTSAC 2 cut(s) 5, 464
NsbI TGCGCA 1 cut(s) 475
NspI RCATGY 1 cut(s) 442
PagI TCATGA 4 cut(s) 235, 514, 520, 574
PciI ACATGT 1 cut(s) 438
PctI GAATGC 1 cut(s) 188
PkrI GCNGC 1 cut(s) 541
PscI ACATGT 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 422
PspEI GGTNACC 1 cut(s) 372
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 3 cut(s) 110, 118, 431
PspPI GGNCC 1 cut(s) 264
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 2 cut(s) 154, 519
SaqAI TTAA 2 cut(s) 270, 557
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 3 cut(s) 48, 97, 517
Sau96I GGNCC 1 cut(s) 264
ScrFI CCNGG 2 cut(s) 113, 424
SduI GDGCHC 2 cut(s) 119, 243
SetI ASST 5 cut(s) 12, 96, 348, 420, 425
SexAI ACCWGGT 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 154, 519
SmlI CTYRAG 2 cut(s) 413, 556
SmoI CTYRAG 2 cut(s) 413, 556
Sse9I AATT 1 cut(s) 272
SsiI CCGC 4 cut(s) 32, 59, 377, 409
SspI AATATT 1 cut(s) 310
SspMI CTAG 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 111, 422
StyI CCWWGG 2 cut(s) 104, 295
TaaI ACNGT 3 cut(s) 173, 497, 548
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 216, 589
TasI AATT 1 cut(s) 272
Tru1I TTAA 2 cut(s) 270, 557
Tru9I TTAA 2 cut(s) 270, 557
TscAI CASTG 1 cut(s) 551
TseFI GTSAC 2 cut(s) 5, 464
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 2 cut(s) 5, 464
TspDTI ATGAA 3 cut(s) 344, 537, 591
TspRI CASTG 1 cut(s) 551
Vha464I CTTAAG 1 cut(s) 556
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 442
XspI CTAG 1 cut(s) 95
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.