Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000048

Physical Location & Seq

Genomic Coordinates Forward (+)

8055687 .. 8058892

Gene Structure 3206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13435.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2985 bp

ATGAATAGGTCTGCTTTATTCAAACCTACCATGCACCTCACTGTTGTTCACTATTTTCTAGTTTTATTTGTGGCCTCTTTGTATGTACACACCGGTTTCTGTCTTGGTGATGGACTTCCAAGCAGTTTGGGATCATCATGCATTGAGGAAGAGAGACGAGCTCTTCTCACCTTCAAGCAGGATCTCATTGATCTCGCTGGTAGGCTTTCTTCTTGGGCAGGCCATGATTGCTGTCAGTGGAAAGGAATTTCATGCGACAACCTTACTGGTCATGTTGTAAGGGTGGACCTCCGGAATGATTATCCATATGTTGACGATTATGAAGATGAATATGTTGTAAGAGAGTCTGCCCAACAATTGGCTTATGATCAGTCTTGCTTGAGAGGTAAGATAAATCCTTCTTTACTTGGCTTGAAGCATTTACATTACCTAGACCTTAGCCGGAATGATTTTGAATGGATTCAAATTCCAACGTTCTTTGGGCAGCTCAGAAGTTTGAGGTATCTCAATGTCTCCTATGCAGCATTTGGGGGAGACATACCTTCTTCTTTTGCTAACTTGTCGAACTTAAACCATCTTGACATCAGTCGAAATTTCTTTGAAGCATCTTCGAAAAACTTGGATTGGATTTCTCATCTCTCTTCCCTGAAGTACATCAATCTAGGAAATCTATACCTTGGCAGCAGAGGAGAAAGTTGGTTTTATGCTATTAATATGCTTCCTTCCTTGTTAGAACTACGTTTGTCTTCGTGCCGAATTCACCAAACCCTTCCCCTCTCACTGCAAACCACTAACCTCACATCACTTTTGGTCCTTGACATATCATATAATGATATTAATTCTTCATTTCCCAGCTGGCTTTTTAATCTTACCAACCTCAAGCAACTTGATCTGAGCAACAACCTTTTCGGCCGTCTCATTCCCAGTGAATTTTCAAACCTCAAAATTCTGGAAGACCTTCGTTTGTCTGGAATAGGACTCGAAGGTCAAATTCCACAACTCAAAGGAAATATCTGCAATCTAAAGTCCTTAGATCTTTCAGGGAACGATTTTGAAACAGGAGTTCACGAGTTCTTTAGAACTTTGTCAGATTGTCCGAATAAGACAATAGTGCATCTTCACCTTGATTCCAATTATATGTGGGGCTCAATTCCAGAATCTGTTGGAAACTTGTCGTGTTTGAAAACACTTGACCTGTCTCATAATTTTATGAACGGGTCCATTCCAGAAAGTCTAGGACAACTGTCTGAGCTAGTTAAGTTATCTCTGTCTGATAATTCCTGGGAAGGGATTATAACTGAAGCTCACTTTAGAAATCTCACCAGCTTGAAAAAATTTGTTTTATGGACATATAAACCCATTCCCCTTATTTTTAAGGTGTCTAATGAGTGGGTTCCTCCTTTCAAGCTCAACTTGATTACCATTGTGAATTGTCAAGTAGGTCCAACCTTTCCGCTCTGGCTTATATCTCAGACTGAATTAGTTAATGTCCAGCTTGACAATACTAGTATCTCGGACTCCATACCAGAGAACTGGTTGTTGAAGATATCCTCCCGAGTCGAAACACTGATTCTATCTAACAACCAAATTGGTGGAAAGCTTCCATTGCAAATGGACTGGCCAAACTCAACGCTGATTGATTTAAGTTATAATCAACTTGAGGGCCCACTTCCACTTTGGTCCAGTAATAATACATTCCACCTTGATCTAGGAAGCAATTTATTCTCCGGGCCCATGCCCTCAAACTTCGGCCAATTAATGCCCAACTTACGATACTTGCTTCTCTCTGAGAATAATCTGAATGGTAGTATTCCAAAATCTCTTGGCAACATGCAAAGCTTATTTATCCTTAACCTAAGAAGCAACCAATTGTCAGGAGAATTTCCTCCCCTGTGGAATTCTTGGCAAGATATAGTTGTTATGGATGTGGGTAACAACAGTCTCTCTGGTCACATACCCAGCTCAATGGGTGTCCCAAGTTCTCTTGAGATATTGAAGTTGAACGACAACAAATTTGAAGGTGAGATTCCTTCTTTCCTTCGAAATTGCCCTTATCTGGAAAGTATTGATCTTGGAGGCAACAAGATTACTGGAATTGTACCATCATGGATAGGCCTAGACATGCCCCGGTTGACTATGCTAAGATTGAGATCCAACTATCTACGTGGACATATTCCCCGTCAATTGTGCAATCTTCAATACCTTCATCTTCTAGACCTTGGTCACAACAACTTTTCGGGTACTATTCCCAAGTGTTTGAATAACCTGCGTACTCTGGCATATCATAATTCCAGTGATGATCTTGTGACAAGATTTGCTTGGTACATTGAAGAAACAACAGTGATTTTAAAAGGACAGGAACTTGTGTACATGGACACTCTGCAGTTTGTAGCCAGCATTGATCTCTCGTCAAACAATTTAGAAGGTGAAATCCCTGAAGAAATAAGCAGTCTTGTTGCATTGGGTACCTTCAACTTGTCGATGAATCAGTTAAGTGGAAACATTCCCTCACAAATTGGAAATTTGCGTTGGTTGGAAACTCTTGATCTCTCACACAACAAGCTTTCAGGACGGATCCCTAAAAGTTTTGCTTCTTTAACCTCATTGTCGCACTTGAACTTGTCTTACAACAACTTGGCGGGAAGAATTCCTTCAGGCTTCCAACTCCAGACACTTGAAGATTCATCCATTTATGAGGGTAATCCGTTACTGTGTGGGGTTCCTCTTTCATTACATTGCCCGGGAGATGATGACAAAAATGATGAGGGTGCAGAAGACGGTGAAGAAGATGGAAATGGGAATGAAAAGCTTGGGTTTAGGGTGAGCATGGTACTCGGCTTTATTGTTGGCTTTTGGGGTGTTTGTGGCACATTAATCATAAAAAAGTCATGGAGGTGTGCCTACTTCCGATTCTTTGATGATATCAAGGACAAGGCAATGCACGCCGTTGTATTGAAGTTGGCACATCTGCGAAGGAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0007275 GO:0007389 GO:0008150 GO:0009505 GO:0009531 GO:0009553 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0010154 GO:0010453 GO:0022414 GO:0022603 GO:0030312 GO:0032501 GO:0032502 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045595 GO:0048226 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051239 GO:0051302 GO:0061458 GO:0065001 GO:0065007 GO:0071944 GO:0090558 GO:0090708 GO:0099402 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

995

Amino Acids

111.65

Weight (kDa)

5.55

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	49 - 86	3.1e-11	Leucine rich repeat N-terminal domain
LRR_14	PF23598	137 - 224	3.6e-06	Leucine-rich repeat region
LRR_8	PF13855	268 - 324	3e-07	Leucine rich repeat
LRR_8	PF13855	371 - 426	1.3e-06	Leucine rich repeat
LRR_14	PF23598	373 - 450	1.1e-07	Leucine-rich repeat region
LRR_8	PF13855	661 - 721	4e-07	Leucine rich repeat
LRR_14	PF23598	800 - 893	6.8e-08	Leucine-rich repeat region
LRR_8	PF13855	839 - 879	7.3e-08	Leucine rich repeat
LRR_4	PF12799	845 - 881	2e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000048)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34930
fragaria_vesca	FvH4_3g12670 FvH4_3g12672 FvH4_3g12740 FvH4_3g12742 FvH4_3g12770 FvH4_3g12770 FvH4_3g12860 FvH4_3g12890 FvH4_3g13431 FvH4_3g13433 FvH4_3g13435 FvH4_3g13470 FvH4_3g13470 FvH4_3g13480 FvH4_3g13562 FvH4_3g13580 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13600 FvH4_3g13610 FvH4_3g13620 FvH4_3g13620 FvH4_3g23240 FvH4_3g32910 FvH4_3g35070 FvH4_3g45520 FvH4_5g08430 FvH4_5g08450 FvH4_6g53230 FvH4_6g53300
malus_domestica	MD05G1217600.v1.1 MD05G1217700.v1.1 MD05G1224700.v1.1 MD05G1225100.v1.1 MD05G1225300.v1.1 MD05G1225400.v1.1 MD05G1235900.v1.1 MD05G1236100.v1.1 MD05G1236300.v1.1 MD05G1237200.v1.1 MD05G1241600.v1.1 MD05G1245700.v1.1 MD05G1245800.v1.1 MD05G1245900.v1.1 MD05G1246000.v1.1 MD05G1246100.v1.1 MD05G1246300.v1.1 MD05G1246400.v1.1 MD05G1246500.v1.1 MD05G1248100.v1.1 MD05G1248200.v1.1 MD05G1264300.v1.1 MD05G1275900.v1.1 MD07G1051400.v1.1 MD09G1012600.v1.1 MD09G1012700.v1.1 MD09G1012800.v1.1 MD10G1221400.v1.1 MD10G1221500.v1.1 MD10G1221600.v1.1 MD10G1221900.v1.1 MD10G1222200.v1.1 MD10G1222400.v1.1 MD10G1222500.v1.1 MD10G1222900.v1.1 MD10G1223000.v1.1 MD10G1223100.v1.1 MD10G1223500.v1.1 MD10G1228000.v1.1 MD12G1019600.v1.1 MD12G1020000.v1.1 MD12G1020100.v1.1 MD17G1013200.v1.1 MD17G1013300.v1.1 MD17G1013400.v1.1
prunus_persica	Prupe.1G060500_v2.0.a1 Prupe.1G100100_v2.0.a1 Prupe.3G124000_v2.0.a1 Prupe.3G304400_v2.0.a1 Prupe.4G116800_v2.0.a1 Prupe.4G116900_v2.0.a1 Prupe.4G117000_v2.0.a1 Prupe.4G121800_v2.0.a1 Prupe.4G121900_v2.0.a1 Prupe.4G122000_v2.0.a1 Prupe.4G122100_v2.0.a1 Prupe.4G122200_v2.0.a1 Prupe.4G122300_v2.0.a1 Prupe.4G122500_v2.0.a1 Prupe.4G122600_v2.0.a1 Prupe.4G122800_v2.0.a1 Prupe.4G122900_v2.0.a1 Prupe.4G123000_v2.0.a1 Prupe.4G123100_v2.0.a1 Prupe.4G123200_v2.0.a1 Prupe.4G131500_v2.0.a1 Prupe.4G131600_v2.0.a1 Prupe.7G032500_v2.0.a1 Prupe.7G032900_v2.0.a1 Prupe.7G033000_v2.0.a1 Prupe.7G033100_v2.0.a1 Prupe.7G033300_v2.0.a1 Prupe.7G033600_v2.0.a1 Prupe.7G034600_v2.0.a1 Prupe.7G040200_v2.0.a1 Prupe.7G059200_v2.0.a1
pyrus_communis	pycom05g20580 pycom05g20590 pycom05g20760 pycom05g20800 pycom05g21280 pycom05g21290 pycom05g21820 pycom05g21830 pycom05g22180 pycom05g22190 pycom05g22210 pycom05g22450 pycom05g22460 pycom05g22470 pycom05g22480 pycom05g22490 pycom05g23770 pycom05g23780 pycom05g24050 pycom05g24060 pycom07g03910 pycom10g18700 pycom10g18720 pycom10g18730 pycom10g18740 pycom10g19150 pycom111g01060 pycom12g01660 pycom12g01690 pycom12g01720 pycom12g01740 pycom12g01750 pycom12g01770 pycom12g01810 pycom12g01820 pycom12g01830 pycom12g01840 pycom12g01870 pycom12g01900 pycom17g01060 pycom17g01070
rosa_chinensis	RchiOBHm_Chr1g0315041 RchiOBHm_Chr1g0315051 RchiOBHm_Chr1g0315071 RchiOBHm_Chr1g0315161 RchiOBHm_Chr1g0315211 RchiOBHm_Chr1g0315251 RchiOBHm_Chr1g0315321 RchiOBHm_Chr1g0315391 RchiOBHm_Chr1g0315451 RchiOBHm_Chr1g0315481 RchiOBHm_Chr1g0315551 RchiOBHm_Chr1g0315601 RchiOBHm_Chr1g0315621 RchiOBHm_Chr1g0359221 RchiOBHm_Chr2g0142981 RchiOBHm_Chr2g0143001 RchiOBHm_Chr2g0143061 RchiOBHm_Chr2g0143091 RchiOBHm_Chr2g0175321 RchiOBHm_Chr2g0175341 RchiOBHm_Chr2g0175361 RchiOBHm_Chr2g0175371 RchiOBHm_Chr3g0470491 RchiOBHm_Chr3g0480881 RchiOBHm_Chr3g0485511 RchiOBHm_Chr5g0020741 RchiOBHm_Chr5g0020901 RchiOBHm_Chr5g0020931 RchiOBHm_Chr5g0020941 RchiOBHm_Chr5g0020961 RchiOBHm_Chr5g0020971 RchiOBHm_Chr5g0021451 RchiOBHm_Chr5g0021531 RchiOBHm_Chr5g0021831 RchiOBHm_Chr5g0021841 RchiOBHm_Chr5g0021931 RchiOBHm_Chr5g0021941 RchiOBHm_Chr5g0021981 RchiOBHm_Chr5g0021991 RchiOBHm_Chr5g0022011 RchiOBHm_Chr5g0022181 RchiOBHm_Chr5g0022191 RchiOBHm_Chr5g0022211 RchiOBHm_Chr5g0022221 RchiOBHm_Chr5g0022231 RchiOBHm_Chr5g0022291 RchiOBHm_Chr5g0022301 RchiOBHm_Chr5g0022331 RchiOBHm_Chr5g0022361 RchiOBHm_Chr5g0022371 RchiOBHm_Chr5g0022381 RchiOBHm_Chr5g0022401 RchiOBHm_Chr5g0022431 RchiOBHm_Chr5g0022451 RchiOBHm_Chr5g0022541 RchiOBHm_Chr5g0022591 RchiOBHm_Chr5g0022601 RchiOBHm_Chr5g0022701 RchiOBHm_Chr5g0022741 RchiOBHm_Chr5g0022791 RchiOBHm_Chr5g0022811 RchiOBHm_Chr5g0022851 RchiOBHm_Chr5g0029441 RchiOBHm_Chr5g0041631 RchiOBHm_Chr5g0069391 RchiOBHm_Chr6g0273811 RchiOBHm_Chr6g0273831 RchiOBHm_Chr6g0275331 RchiOBHm_Chr7g0219061
rosa_laevigata	RLG00000002463 RLG00000020007 RLG00000020008 RLG00000022320 RLG00000022321 RLG00000023446 RLG00000030742 RLG00000030743 RLG00000030747 RLG00000032557 RLG00000032564 RLG00000032571 RLG00000032573 RLG00000032574 RLG00000032612 RLG00000032633 RLG00000032636 RLG00000032638 RLG00000032650 RLG00000032651 RLG00000032652 RLG00000032653 RLG00000032655 RLG00000032673 RLG00000032678 RLG00000032769 RLG00000032857 RLG00000033168 RLG00000033465 RLG00000034086 RLG00000034222 RLG00000035290
rosa_multiflora	Rmu_co8143358.1_g000001 Rmu_co8518791.1_g000001 Rmu_sc0000178.1_g000008 Rmu_sc0000178.1_g000014 Rmu_sc0000401.1_g000005 Rmu_sc0000401.1_g000013 Rmu_sc0000401.1_g000017 Rmu_sc0000401.1_g000018 Rmu_sc0000401.1_g000024 Rmu_sc0000401.1_g000025 Rmu_sc0000576.1_g000020 Rmu_sc0001585.1_g000003 Rmu_sc0001585.1_g000005 Rmu_sc0001585.1_g000008 Rmu_sc0001784.1_g000006 Rmu_sc0001784.1_g000011 Rmu_sc0001784.1_g000022 Rmu_sc0001784.1_g000028 Rmu_sc0002052.1_g000004 Rmu_sc0002052.1_g000011 Rmu_sc0002277.1_g000003 Rmu_sc0002277.1_g000006 Rmu_sc0002277.1_g000024 Rmu_sc0002658.1_g000012 Rmu_sc0003512.1_g000004 Rmu_sc0003512.1_g000007 Rmu_sc0004180.1_g000016 Rmu_sc0004180.1_g000029 Rmu_sc0004180.1_g000034 Rmu_sc0005639.1_g000008 Rmu_sc0005639.1_g000023 Rmu_sc0006070.1_g000016 Rmu_sc0006070.1_g000017 Rmu_sc0006966.1_g000021 Rmu_sc0006966.1_g000023 Rmu_sc0007239.1_g000003 Rmu_sc0008460.1_g000010 Rmu_sc0009984.1_g000008 Rmu_sc0010181.1_g000005 Rmu_sc0010181.1_g000010 Rmu_sc0010503.1_g000006 Rmu_sc0011646.1_g000003 Rmu_sc0012984.1_g000011 Rmu_sc0016972.1_g000005 Rmu_sc0016972.1_g000008 Rmu_sc0023070.1_g000003 Rmu_sc0025660.1_g000001 Rmu_ssc0000322.1_g000019
rosa_roxburghii	Rroxscaffold_1G00038860 Rroxscaffold_1G00053490 Rroxscaffold_1G00053500 Rroxscaffold_1G00054230 Rroxscaffold_1G00056460 Rroxscaffold_1G00056470 Rroxscaffold_1G00056480 Rroxscaffold_1G00056500 Rroxscaffold_1G00056510 Rroxscaffold_1G00056620 Rroxscaffold_1G00056690 Rroxscaffold_1G00056710 Rroxscaffold_1G00056720 Rroxscaffold_1G00056730 Rroxscaffold_1G00056740 Rroxscaffold_1G00056750 Rroxscaffold_1G00056760 Rroxscaffold_1G00056870 Rroxscaffold_1G00056900 Rroxscaffold_1G00057120 Rroxscaffold_1G00057560 Rroxscaffold_2G00077430 Rroxscaffold_2G00102160 Rroxscaffold_3G00231420 Rroxscaffold_3G00231430 Rroxscaffold_4G00297230 Rroxscaffold_4G00331570 Rroxscaffold_6G00396700 Rroxscaffold_6G00400940 Rroxscaffold_7G00192740
rosa_rugosa	Rorug01G0004400 Rorug01G0004500 Rorug02G0377600 Rorug02G0378000 Rorug02G0582800 Rorug02G0583400 Rorug03G0187000 Rorug03G0218800 Rorug04G0081200 Rorug05G0062700 Rorug05G0062700 Rorug05G0063100 Rorug05G0063200 Rorug05G0063200 Rorug05G0063200 Rorug05G0067000 Rorug05G0069700 Rorug05G0069900 Rorug05G0070000 Rorug05G0070100 Rorug05G0070300 Rorug05G0070400 Rorug05G0070600 Rorug05G0070600 Rorug05G0072300 Rorug05G0072400 Rorug05G0072500 Rorug05G0072500 Rorug05G0072600.1 Rorug05G0072700 Rorug05G0072800 Rorug05G0072800 Rorug05G0072900 Rorug05G0073000 Rorug05G0073000 Rorug05G0073400 Rorug05G0073400 Rorug05G0073400 Rorug05G0074800 Rorug05G0075000 Rorug05G0114300 Rorug05G0194200 Rorug06G0097800
rosa_samantha	Rh2AG401400 Rh2CG387600 Rh2CG417000 Rh2CG637400 Rh5CG169600 Rh5CG172100 Rh5CG175200 Rh5CG317100 Rh6DG187900
rosa_wichuraiana	Rw1G000750 Rw1G000790 Rw1G000820 Rw1G000860 Rw1G000880 Rw1G000910 Rw2G035180 Rw2G035200 Rw2G035240 Rw2G054370 Rw2G054380 Rw5G013570 Rw5G013580 Rw5G013590 Rw5G013910 Rw5G013980 Rw5G014110 Rw5G014120 Rw5G014280 Rw5G014310 Rw5G014400 Rw5G014420 Rw5G014440 Rw5G014460 Rw5G014480 Rw5G014500 Rw5G014520 Rw5G014530 Rw5G042390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1295, 1650
AasI	GACNNNNNNGTC	1 cut(s)	984
Acc36I	ACCTGC	1 cut(s)	2274
Acc65I	GGTACC	1 cut(s)	2465
AccB1I	GGYRCC	1 cut(s)	2465
AccB7I	CCANNNNNTGG	1 cut(s)	358
AccBSI	CCGCTC	1 cut(s)	1456
AccIII	TCCGGA	1 cut(s)	291
AciI	CCGC	2 cut(s)	1454, 2639
AclI	AACGTT	1 cut(s)	473
AclWI	GGATC	5 cut(s)	139, 189, 2145, 2569, 2582
AcoI	YGGCCR	3 cut(s)	910, 1619, 1750
AcuI	CTGAAG	4 cut(s)	668, 1320, 2457, 2637
AfaI	GTAC	9 cut(s)	87, 653, 2100, 2242, 2272, 2324, 2369, 2467, 2832
AfiI	CCNNNNNNNGG	3 cut(s)	358, 1287, 2056
AgeI	ACCGGT	1 cut(s)	92
AhlI	ACTAGT	1 cut(s)	1505
AjnI	CCWGG	1 cut(s)	1280
AjuI	GAANNNNNNNTTGG	2 cut(s)	2512, 2544
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	6 cut(s)	148, 517, 528, 920, 1203, 1946
AlwI	GGATC	5 cut(s)	139, 189, 2145, 2569, 2582
AlwNI	CAGNNNCTG	1 cut(s)	1160
Ama87I	CYCGRG	2 cut(s)	1554, 2740
Aor13HI	TCCGGA	1 cut(s)	291
AoxI	GGCC	8 cut(s)	72, 220, 910, 1619, 1663, 1730, 1750, 2113
ApaI	GGGCCC	2 cut(s)	1667, 1734
ApeKI	GCWGC	3 cut(s)	484, 521, 681
ArsI	GACNNNNNNTTYG	2 cut(s)	1997, 2029
AseI	ATTAAT	4 cut(s)	711, 837, 1757, 2873
AsiGI	ACCGGT	1 cut(s)	92
Asp700I	GAANNNNTTC	3 cut(s)	459, 957, 2650
Asp718I	GGTACC	1 cut(s)	2465
AspS9I	GGNCC	9 cut(s)	286, 811, 1218, 1442, 1663, 1664, 1680, 1730, 1731
AsuC2I	CCSGG	4 cut(s)	1729, 2128, 2741, 2742
AsuHPI	GGTGA	9 cut(s)	119, 160, 752, 1112, 1312, 2033, 2438, 2792, 2833
AsuII	TTCGAA	2 cut(s)	611, 2041
AvaI	CYCGRG	2 cut(s)	1554, 2740
AvaII	GGWCC	5 cut(s)	286, 811, 1218, 1442, 1680
BaeGI	GKGCMC	2 cut(s)	1667, 1734
BalI	TGGCCA	1 cut(s)	1621
BamHI	GGATCC	1 cut(s)	2574
BanI	GGYRCC	1 cut(s)	2465
BanII	GRGCYC	4 cut(s)	163, 1148, 1667, 1734
BarI	GAAGNNNNNNTAC	2 cut(s)	193, 225
BauI	CACGAG	1 cut(s)	1067
BbsI	GAAGAC	3 cut(s)	738, 960, 2781
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	496, 533, 693
BccI	CCATC	4 cut(s)	104, 582, 2110, 2783
BceAI	ACGGC	2 cut(s)	897, 2930
BcgI	CGANNNNNNTGC	2 cut(s)	2815, 2849
BciT130I	CCWGG	1 cut(s)	1282
BclI	TGATCA	1 cut(s)	367
BcnI	CCSGG	4 cut(s)	1729, 2128, 2741, 2742
BcoDI	GTCTC	6 cut(s)	148, 517, 528, 920, 1203, 1946
BcuI	ACTAGT	1 cut(s)	1505
BfaI	CTAG	9 cut(s)	59, 431, 662, 1235, 1253, 1506, 1709, 2117, 2213
BfmI	CTRYAG	1 cut(s)	2381
BfuAI	ACCTGC	1 cut(s)	2274
BglII	AGATCT	1 cut(s)	1033
BisI	GCNGC	3 cut(s)	485, 522, 682
BlsI	GCNGC	3 cut(s)	486, 523, 683
Bme1390I	CCNGG	5 cut(s)	1282, 1729, 2128, 2741, 2742
Bme18I	GGWCC	5 cut(s)	286, 811, 1218, 1442, 1680
BmeT110I	CYCGRG	2 cut(s)	1554, 2740
BmgT120I	GGNCC	9 cut(s)	286, 811, 1218, 1442, 1663, 1664, 1680, 1730, 1731
BmiI	GGNNCC	7 cut(s)	1219, 1395, 1665, 1732, 2467, 2576, 2721
BmrFI	CCNGG	5 cut(s)	1282, 1729, 2128, 2741, 2742
BmrI	ACTGGG	1 cut(s)	918
BmsI	GCATC	2 cut(s)	614, 1123
BmuI	ACTGGG	1 cut(s)	918
BoxI	GACNNNNGTC	3 cut(s)	585, 1243, 2220
BpiI	GAAGAC	3 cut(s)	738, 960, 2781
BplI	GAGNNNNNCTC	4 cut(s)	145, 177, 150, 182
BpmI	CTGGAG	1 cut(s)	2651
Bpu10I	CCTNAGC	1 cut(s)	437
Bpu14I	TTCGAA	2 cut(s)	611, 2041
BpuEI	CTTGAG	4 cut(s)	400, 863, 1679, 2006
BpuMI	CCSGG	4 cut(s)	1729, 2128, 2741, 2742
BsaAI	YACGTR	1 cut(s)	2165
BsaBI	GATNNNNATC	1 cut(s)	2149
BsaJI	CCNNGG	5 cut(s)	676, 1281, 2126, 2218, 2740
BsaWI	WCCGGW	2 cut(s)	92, 291
Bsc4I	CCNNNNNNNGG	3 cut(s)	358, 1287, 2056
Bse118I	RCCGGY	1 cut(s)	92
Bse1I	ACTGG	7 cut(s)	271, 924, 1538, 1622, 1683, 2095, 2292
Bse3DI	GCAATG	3 cut(s)	1604, 2734, 2943
Bse8I	GATNNNNATC	1 cut(s)	2149
BseAI	TCCGGA	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	1282
BseDI	CCNNGG	5 cut(s)	676, 1281, 2126, 2218, 2740
BseGI	GGATG	2 cut(s)	1930, 2684
BseJI	GATNNNNATC	1 cut(s)	2149
BseLI	CCNNNNNNNGG	3 cut(s)	358, 1287, 2056
BseMI	GCAATG	3 cut(s)	1604, 2734, 2943
BseMII	CTCAG	5 cut(s)	502, 884, 1239, 1484, 1779
BseNI	ACTGG	7 cut(s)	271, 924, 1538, 1622, 1683, 2095, 2292
BseRI	GAGGAG	1 cut(s)	702
BseSI	GKGCMC	2 cut(s)	1667, 1734
BseX3I	CGGCCG	1 cut(s)	910
BseXI	GCAGC	3 cut(s)	496, 533, 693
BseYI	CCCAGC	2 cut(s)	851, 1958
BsgI	GTGCAG	1 cut(s)	2790
Bsh1285I	CGRYCG	1 cut(s)	913
BshFI	GGCC	8 cut(s)	74, 222, 912, 1621, 1665, 1732, 1752, 2115
BshNI	GGYRCC	1 cut(s)	2465
BshTI	ACCGGT	1 cut(s)	92
BsiEI	CGRYCG	1 cut(s)	913
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	2 cut(s)	1554, 2740
BsiSI	CCGG	6 cut(s)	93, 292, 442, 1728, 2128, 2741
BslFI	GGGAC	1 cut(s)	1958
BslI	CCNNNNNNNGG	3 cut(s)	358, 1287, 2056
BsmAI	GTCTC	6 cut(s)	148, 517, 528, 920, 1203, 1946
BsmBI	CGTCTC	2 cut(s)	148, 920
BsmFI	GGGAC	1 cut(s)	1958
BsnI	GGCC	8 cut(s)	74, 222, 912, 1621, 1665, 1732, 1752, 2115
BsoBI	CYCGRG	2 cut(s)	1554, 2740
Bsp119I	TTCGAA	2 cut(s)	611, 2041
Bsp120I	GGGCCC	2 cut(s)	1663, 1730
Bsp1286I	GDGCHC	4 cut(s)	163, 1148, 1667, 1734
Bsp13I	TCCGGA	1 cut(s)	291
Bsp1407I	TGTACA	2 cut(s)	85, 2367
BspACI	CCGC	2 cut(s)	1454, 2639
BspANI	GGCC	8 cut(s)	74, 222, 912, 1621, 1665, 1732, 1752, 2115
BspCNI	CTCAG	5 cut(s)	501, 885, 1240, 1483, 1780
BspEI	TCCGGA	1 cut(s)	291
BspLI	GGNNCC	7 cut(s)	1219, 1395, 1665, 1732, 2467, 2576, 2721
BspMAI	CTGCAG	1 cut(s)	2385
BspMI	ACCTGC	1 cut(s)	2274
BspPI	GGATC	5 cut(s)	139, 189, 2145, 2569, 2582
BspQI	GCTCTTC	1 cut(s)	168
BspT104I	TTCGAA	2 cut(s)	611, 2041
BspT107I	GGYRCC	1 cut(s)	2465
BsrBI	CCGCTC	1 cut(s)	1456
BsrDI	GCAATG	3 cut(s)	1604, 2734, 2943
BsrFI	RCCGGY	1 cut(s)	92
BsrGI	TGTACA	2 cut(s)	85, 2367
BsrI	ACTGG	7 cut(s)	271, 924, 1538, 1622, 1683, 2095, 2292
BssAI	RCCGGY	1 cut(s)	92
BssECI	CCNNGG	5 cut(s)	676, 1281, 2126, 2218, 2740
BssSI	CACGAG	1 cut(s)	1067
BssT1I	CCWWGG	2 cut(s)	676, 2218
Bst2BI	CACGAG	1 cut(s)	1067
Bst2UI	CCWGG	1 cut(s)	1282
Bst4CI	ACNGT	6 cut(s)	43, 1245, 1940, 2341, 2712, 2780
Bst6I	CTCTTC	3 cut(s)	144, 168, 646
BstAUI	TGTACA	2 cut(s)	85, 2367
BstBAI	YACGTR	1 cut(s)	2165
BstBI	TTCGAA	2 cut(s)	611, 2041
BstC8I	GCNNGC	4 cut(s)	220, 857, 2395, 2943
BstDEI	CTNAG	9 cut(s)	437, 488, 893, 1030, 1248, 1470, 1788, 1856, 2141
BstF5I	GGATG	2 cut(s)	1930, 2684
BstMAI	GTCTC	6 cut(s)	148, 517, 528, 920, 1203, 1946
BstMCI	CGRYCG	1 cut(s)	913
BstMWI	GCNNNNNNNGC	3 cut(s)	228, 1606, 2942
BstNI	CCWGG	1 cut(s)	1282
BstNSI	RCATGY	2 cut(s)	1834, 2125
BstPAI	GACNNNNGTC	3 cut(s)	585, 1243, 2220
BstSCI	CCNGG	5 cut(s)	1280, 1727, 2126, 2739, 2740
BstSFI	CTRYAG	1 cut(s)	2381
BstSLI	GKGCMC	2 cut(s)	1667, 1734
BstV1I	GCAGC	3 cut(s)	496, 533, 693
BstV2I	GAAGAC	3 cut(s)	738, 960, 2781
BstX2I	RGATCY	4 cut(s)	181, 1033, 2150, 2574
BstXI	CCANNNNNNTGG	3 cut(s)	1533, 1592, 1966
BstYI	RGATCY	4 cut(s)	181, 1033, 2150, 2574
BstZI	CGGCCG	1 cut(s)	910
BsuRI	GGCC	8 cut(s)	74, 222, 912, 1621, 1665, 1732, 1752, 2115
BtsCI	GGATG	2 cut(s)	1930, 2684
BtsI	GCAGTG	1 cut(s)	779
BtsIMutI	CAGTG	7 cut(s)	39, 242, 779, 931, 1565, 2299, 2346
BveI	ACCTGC	1 cut(s)	2274
Cac8I	GCNNGC	4 cut(s)	220, 857, 2395, 2943
CaiI	CAGNNNCTG	1 cut(s)	1160
Cfr10I	RCCGGY	1 cut(s)	92
Cfr13I	GGNCC	9 cut(s)	286, 811, 1218, 1442, 1663, 1664, 1680, 1730, 1731
Cfr9I	CCCGGG	1 cut(s)	2740
Csp6I	GTAC	9 cut(s)	86, 652, 2099, 2241, 2271, 2323, 2368, 2466, 2831
CspAI	ACCGGT	1 cut(s)	92
CviQI	GTAC	9 cut(s)	86, 652, 2099, 2241, 2271, 2323, 2368, 2466, 2831
DdeI	CTNAG	9 cut(s)	437, 488, 893, 1030, 1248, 1470, 1788, 1856, 2141
DraI	TTTAAA	1 cut(s)	2349
DrdI	GACNNNNNNGTC	1 cut(s)	984
DseDI	GACNNNNNNGTC	1 cut(s)	984
EaeI	YGGCCR	3 cut(s)	910, 1619, 1750
EagI	CGGCCG	1 cut(s)	910
Eam1104I	CTCTTC	3 cut(s)	144, 168, 646
EarI	CTCTTC	3 cut(s)	144, 168, 646
Ecl136II	GAGCTC	1 cut(s)	161
EclXI	CGGCCG	1 cut(s)	910
Eco130I	CCWWGG	2 cut(s)	676, 2218
Eco147I	AGGCCT	1 cut(s)	2115
Eco24I	GRGCYC	4 cut(s)	163, 1148, 1667, 1734
Eco32I	GATATC	2 cut(s)	1548, 2923
Eco47I	GGWCC	5 cut(s)	286, 811, 1218, 1442, 1680
Eco52I	CGGCCG	1 cut(s)	910
Eco53kI	GAGCTC	1 cut(s)	161
Eco57I	CTGAAG	4 cut(s)	668, 1320, 2457, 2637
Eco88I	CYCGRG	2 cut(s)	1554, 2740
EcoICRI	GAGCTC	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	1663
EcoRI	GAATTC	3 cut(s)	756, 1897, 2646
EcoRII	CCWGG	1 cut(s)	1280
EcoRV	GATATC	2 cut(s)	1548, 2923
EcoT14I	CCWWGG	2 cut(s)	676, 2218
EcoT22I	ATGCAT	1 cut(s)	143
EcoT38I	GRGCYC	4 cut(s)	163, 1148, 1667, 1734
ErhI	CCWWGG	2 cut(s)	676, 2218
Esp3I	CGTCTC	2 cut(s)	148, 920
FalI	AAGNNNNNCTT	9 cut(s)	1397, 1429, 2302, 2334, 2575, 2607, 2635, 2667, 2965
FaqI	GGGAC	1 cut(s)	1958
FauI	CCCGC	1 cut(s)	2632
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	367
Fnu4HI	GCNGC	3 cut(s)	485, 522, 682
FokI	GGATG	2 cut(s)	1937, 2671
FriOI	GRGCYC	4 cut(s)	163, 1148, 1667, 1734
Fsp4HI	GCNGC	3 cut(s)	485, 522, 682
FspBI	CTAG	9 cut(s)	59, 431, 662, 1235, 1253, 1506, 1709, 2117, 2213
GluI	GCNGC	3 cut(s)	485, 522, 682
GsaI	CCCAGC	2 cut(s)	855, 1962
GsuI	CTGGAG	1 cut(s)	2651
HaeIII	GGCC	8 cut(s)	74, 222, 912, 1621, 1665, 1732, 1752, 2115
HapII	CCGG	6 cut(s)	93, 292, 442, 1728, 2128, 2741
HincII	GTYRAC	2 cut(s)	313, 2133
HindII	GTYRAC	2 cut(s)	313, 2133
HindIII	AAGCTT	4 cut(s)	1598, 1837, 2561, 2807
HpaII	CCGG	6 cut(s)	93, 292, 442, 1728, 2128, 2741
HphI	GGTGA	9 cut(s)	119, 160, 752, 1112, 1312, 2033, 2438, 2792, 2833
Hpy166II	GTNNAC	8 cut(s)	49, 88, 286, 313, 1066, 2133, 2168, 2368
Hpy8I	GTNNAC	8 cut(s)	49, 88, 286, 313, 1066, 2133, 2168, 2368
HpyCH4III	ACNGT	6 cut(s)	43, 1245, 1940, 2341, 2712, 2780
HpyCH4IV	ACGT	3 cut(s)	473, 739, 2164
HpyF10VI	GCNNNNNNNGC	3 cut(s)	228, 1606, 2942
HpyF3I	CTNAG	9 cut(s)	437, 488, 893, 1030, 1248, 1470, 1788, 1856, 2141
HpySE526I	ACGT	3 cut(s)	473, 739, 2164
Kpn2I	TCCGGA	1 cut(s)	291
KpnI	GGTACC	1 cut(s)	2469
Ksp22I	TGATCA	1 cut(s)	367
LguI	GCTCTTC	1 cut(s)	168
Lsp1109I	GCAGC	3 cut(s)	496, 533, 693
LweI	GCATC	2 cut(s)	614, 1123
MaeI	CTAG	9 cut(s)	59, 431, 662, 1235, 1253, 1506, 1709, 2117, 2213
MaeII	ACGT	3 cut(s)	473, 739, 2164
MaeIII	GTNAC	5 cut(s)	1931, 1949, 2222, 2305, 2706
MbiI	CCGCTC	1 cut(s)	1456
MfeI	CAATTG	3 cut(s)	356, 1868, 2183
MflI	RGATCY	4 cut(s)	181, 1033, 2150, 2574
MhlI	GDGCHC	4 cut(s)	163, 1148, 1667, 1734
MlsI	TGGCCA	1 cut(s)	1621
MluNI	TGGCCA	1 cut(s)	1621
MlyI	GAGTC	4 cut(s)	353, 972, 1511, 1566
MmeI	TCCRAC	6 cut(s)	494, 1144, 1469, 2178, 2514, 2686
Mox20I	TGGCCA	1 cut(s)	1621
Mph1103I	ATGCAT	1 cut(s)	143
MroI	TCCGGA	1 cut(s)	291
MroXI	GAANNNNTTC	3 cut(s)	459, 957, 2650
MscI	TGGCCA	1 cut(s)	1621
MslI	CAYNNNNRTG	1 cut(s)	2893
Msp20I	TGGCCA	1 cut(s)	1621
MspA1I	CMGCKG	1 cut(s)	855
MspI	CCGG	6 cut(s)	93, 292, 442, 1728, 2128, 2741
MspR9I	CCNGG	5 cut(s)	1282, 1729, 2128, 2741, 2742
MunI	CAATTG	3 cut(s)	356, 1868, 2183
MvaI	CCWGG	1 cut(s)	1282
MwoI	GCNNNNNNNGC	3 cut(s)	228, 1606, 2942
NciI	CCSGG	4 cut(s)	1729, 2128, 2741, 2742
NdeI	CATATG	1 cut(s)	307
NlaIV	GGNNCC	7 cut(s)	1219, 1395, 1665, 1732, 2467, 2576, 2721
NmeAIII	GCCGAG	1 cut(s)	2814
NmuCI	GTSAC	3 cut(s)	1949, 2222, 2305
NsiI	ATGCAT	1 cut(s)	143
NspI	RCATGY	2 cut(s)	1834, 2125
NspV	TTCGAA	2 cut(s)	611, 2041
PceI	AGGCCT	1 cut(s)	2115
PciSI	GCTCTTC	1 cut(s)	168
PdmI	GAANNNNTTC	3 cut(s)	459, 957, 2650
PfeI	GAWTC	8 cut(s)	460, 1127, 1157, 1570, 2026, 2485, 2681, 2910
PflMI	CCANNNNNTGG	1 cut(s)	358
PinAI	ACCGGT	1 cut(s)	92
PkrI	GCNGC	3 cut(s)	486, 523, 683
PleI	GAGTC	4 cut(s)	352, 972, 1511, 1565
PpsI	GAGTC	4 cut(s)	352, 972, 1511, 1565
Ppu21I	YACGTR	1 cut(s)	2165
PshAI	GACNNNNGTC	3 cut(s)	585, 1243, 2220
PshBI	ATTAAT	4 cut(s)	711, 837, 1757, 2873
PsiI	TTATAA	2 cut(s)	1295, 1650
Psp124BI	GAGCTC	1 cut(s)	163
Psp1406I	AACGTT	1 cut(s)	473
Psp6I	CCWGG	1 cut(s)	1280
PspFI	CCCAGC	2 cut(s)	851, 1958
PspGI	CCWGG	1 cut(s)	1280
PspN4I	GGNNCC	7 cut(s)	1219, 1395, 1665, 1732, 2467, 2576, 2721
PspOMI	GGGCCC	2 cut(s)	1663, 1730
PspPI	GGNCC	9 cut(s)	286, 811, 1218, 1442, 1663, 1664, 1680, 1730, 1731
PsrI	GAACNNNNNNTAC	2 cut(s)	2609, 2641
PstI	CTGCAG	1 cut(s)	2385
PstNI	CAGNNNCTG	1 cut(s)	1160
PsuI	RGATCY	4 cut(s)	181, 1033, 2150, 2574
PvuII	CAGCTG	1 cut(s)	855
RsaI	GTAC	9 cut(s)	87, 653, 2100, 2242, 2272, 2324, 2369, 2467, 2832
RsaNI	GTAC	9 cut(s)	86, 652, 2099, 2241, 2271, 2323, 2368, 2466, 2831
RseI	CAYNNNNRTG	1 cut(s)	2893
SacI	GAGCTC	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	168
SatI	GCNGC	3 cut(s)	485, 522, 682
Sau96I	GGNCC	9 cut(s)	286, 811, 1218, 1442, 1663, 1664, 1680, 1730, 1731
SchI	GAGTC	4 cut(s)	353, 972, 1511, 1566
ScrFI	CCNGG	5 cut(s)	1282, 1729, 2128, 2741, 2742
SduI	GDGCHC	4 cut(s)	163, 1148, 1667, 1734
SfaNI	GCATC	2 cut(s)	614, 1123
SfcI	CTRYAG	1 cut(s)	2381
SfuI	TTCGAA	2 cut(s)	611, 2041
SinI	GGWCC	5 cut(s)	286, 811, 1218, 1442, 1680
SmaI	CCCGGG	1 cut(s)	2742
SmiMI	CAYNNNNRTG	1 cut(s)	2893
SmlI	CTYRAG	4 cut(s)	379, 878, 1658, 1985
SmoI	CTYRAG	4 cut(s)	379, 878, 1658, 1985
SpeI	ACTAGT	1 cut(s)	1505
SseBI	AGGCCT	1 cut(s)	2115
SsiI	CCGC	2 cut(s)	1454, 2639
SspMI	CTAG	9 cut(s)	59, 431, 662, 1235, 1253, 1506, 1709, 2117, 2213
SstI	GAGCTC	1 cut(s)	163
StuI	AGGCCT	1 cut(s)	2115
StyD4I	CCNGG	5 cut(s)	1280, 1727, 2126, 2739, 2740
StyI	CCWWGG	2 cut(s)	676, 2218
TaaI	ACNGT	6 cut(s)	43, 1245, 1940, 2341, 2712, 2780
TaiI	ACGT	3 cut(s)	476, 742, 2167
TaqI	TCGA	7 cut(s)	563, 589, 611, 981, 1560, 2041, 2480
TatI	WGTACW	3 cut(s)	85, 651, 2367
TfiI	GAWTC	8 cut(s)	460, 1127, 1157, 1570, 2026, 2485, 2681, 2910
TscAI	CASTG	7 cut(s)	46, 242, 786, 931, 1572, 2299, 2346
TseFI	GTSAC	3 cut(s)	1949, 2222, 2305
TseI	GCWGC	3 cut(s)	484, 521, 681
Tsp45I	GTSAC	3 cut(s)	1949, 2222, 2305
TspGWI	ACGGA	2 cut(s)	2587, 2694
TspMI	CCCGGG	1 cut(s)	2740
TspRI	CASTG	7 cut(s)	46, 242, 786, 931, 1572, 2299, 2346
Van91I	CCANNNNNTGG	1 cut(s)	358
VpaK11BI	GGWCC	5 cut(s)	286, 811, 1218, 1442, 1680
VspI	ATTAAT	4 cut(s)	711, 837, 1757, 2873
XbaI	TCTAGA	1 cut(s)	2212
XceI	RCATGY	2 cut(s)	1834, 2125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1674
XmaI	CCCGGG	1 cut(s)	2740
XmnI	GAANNNNTTC	3 cut(s)	459, 957, 2650
XspI	CTAG	9 cut(s)	59, 431, 662, 1235, 1253, 1506, 1709, 2117, 2213
Zsp2I	ATGCAT	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.